RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 AEBP2Q6ZN18 517 aaPredicted RBP29.44■■■□□ 2.3
PRKDC-205ENST00000535375 CHIC1Q5VXU3 224 aa28.36■■■□□ 2.13
PRKDC-205ENST00000535375 SENP3Q9H4L4 574 aaPredicted RBP25.14■■□□□ 1.62
PRKDC-205ENST00000535375 PHF23Q9BUL5 403 aaPredicted RBP24.85■■□□□ 1.57
PRKDC-205ENST00000535375 FOXD1Q16676 465 aa23.34■■□□□ 1.33
PRKDC-205ENST00000535375 PLPPR3Q6T4P5 718 aa22.93■■□□□ 1.26
PRKDC-205ENST00000535375 PPP6R1Q9UPN7 881 aa22.07■■□□□ 1.12
PRKDC-205ENST00000535375 ADRA2BP18089 450 aa22.06■■□□□ 1.12
PRKDC-205ENST00000535375 PIAS4Q8N2W9 510 aaPredicted RBP21.95■■□□□ 1.1
PRKDC-205ENST00000535375 MSH5O43196 834 aa21.75■■□□□ 1.07
PRKDC-205ENST00000535375 POTEDQ86YR6 584 aa20.56■□□□□ 0.88
PRKDC-205ENST00000535375 SCAF1Q9H7N4 1312 aaKnown RBP20.26■□□□□ 0.83
PRKDC-205ENST00000535375 PPP4R3CPQ6ZMV5 832 aa20.17■□□□□ 0.82
PRKDC-205ENST00000535375 MAPK8IP2Q13387 824 aaPredicted RBP20.13■□□□□ 0.81
PRKDC-205ENST00000535375 DMRT2Q9Y5R5 561 aa19.96■□□□□ 0.79
PRKDC-205ENST00000535375 NCBP3Q53F19 620 aaKnown RBP19.7■□□□□ 0.74
PRKDC-205ENST00000535375 CNKSR2Q8WXI2 1034 aa19.64■□□□□ 0.73
PRKDC-205ENST00000535375 KCNA4P22459 653 aa19.58■□□□□ 0.72
PRKDC-205ENST00000535375 HOXD11P31277 338 aaPredicted RBP19.36■□□□□ 0.69
PRKDC-205ENST00000535375 RNF216Q9NWF9 866 aaPredicted RBP19.34■□□□□ 0.69
PRKDC-205ENST00000535375 NPM3O75607 178 aaKnown RBP19.3■□□□□ 0.68
PRKDC-205ENST00000535375 DCAF8L1A6NGE4 600 aa19.19■□□□□ 0.66
PRKDC-205ENST00000535375 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
PRKDC-205ENST00000535375 SLC4A1APQ9BWU0 796 aaKnown RBP18.68■□□□□ 0.58
PRKDC-205ENST00000535375 RNF39Q9H2S5 420 aa18.56■□□□□ 0.56
PRKDC-205ENST00000535375 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.51■□□□□ 0.55
PRKDC-205ENST00000535375 CACNB1Q02641 598 aaPredicted RBP18.45■□□□□ 0.54
PRKDC-205ENST00000535375 C1QBPQ07021 282 aaKnown RBP18.33■□□□□ 0.52
PRKDC-205ENST00000535375 SLC4A2P04920 1241 aa18.21■□□□□ 0.51
PRKDC-205ENST00000535375 U3KPZ7 1027 aaPredicted RBP18.11■□□□□ 0.49
PRKDC-205ENST00000535375 FOXD4L1Q9NU39 408 aa18.07■□□□□ 0.48
PRKDC-205ENST00000535375 EHMT2Q96KQ7 1210 aa18.05■□□□□ 0.48
PRKDC-205ENST00000535375 ZBTB22O15209 634 aa17.95■□□□□ 0.46
PRKDC-205ENST00000535375 MYCNP04198 464 aaPredicted RBP17.89■□□□□ 0.45
PRKDC-205ENST00000535375 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.83■□□□□ 0.44
PRKDC-205ENST00000535375 HNRNPUL2Q1KMD3 747 aaKnown RBP17.83■□□□□ 0.44
PRKDC-205ENST00000535375 CSRNP3Q8WYN3 585 aa17.81■□□□□ 0.44
PRKDC-205ENST00000535375 CAPN15O75808 1086 aa17.74■□□□□ 0.43
PRKDC-205ENST00000535375 APLP2Q06481 763 aa17.74■□□□□ 0.43
PRKDC-205ENST00000535375 SPINK5Q9NQ38 1064 aaPredicted RBP17.74■□□□□ 0.43
PRKDC-205ENST00000535375 SAMD1Q6SPF0 538 aaPredicted RBP17.73■□□□□ 0.43
PRKDC-205ENST00000535375 TRHP20396 242 aaPredicted RBP17.55■□□□□ 0.4
PRKDC-205ENST00000535375 ZNF219Q9P2Y4 722 aaPredicted RBP17.53■□□□□ 0.4
PRKDC-205ENST00000535375 DSG3P32926 999 aa17.5■□□□□ 0.39
PRKDC-205ENST00000535375 ATXN8OSP0DMR3 200 aa17.46■□□□□ 0.39
PRKDC-205ENST00000535375 ABCB7O75027 752 aa17.34■□□□□ 0.37
PRKDC-205ENST00000535375 ATF5Q9Y2D1 282 aaPredicted RBP17.34■□□□□ 0.37
PRKDC-205ENST00000535375 POLA2Q14181 598 aa17.13■□□□□ 0.33
PRKDC-205ENST00000535375 ZBTB12Q9Y330 459 aaPredicted RBP16.87■□□□□ 0.29
PRKDC-205ENST00000535375 FBLN2P98095 1184 aa16.76■□□□□ 0.27
PRKDC-205ENST00000535375 RBM42Q9BTD8 480 aaKnown RBP16.75■□□□□ 0.27
PRKDC-205ENST00000535375 MKRN4PQ13434 485 aaPredicted RBP16.58■□□□□ 0.24
PRKDC-205ENST00000535375 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
PRKDC-205ENST00000535375 AKT1S1Q96B36 256 aa16.42■□□□□ 0.22
PRKDC-205ENST00000535375 SPDYE2BA6NHP3 402 aa16.34■□□□□ 0.21
PRKDC-205ENST00000535375 SPDYE6P0CI01 402 aa16.34■□□□□ 0.21
PRKDC-205ENST00000535375 SPDYE2Q495Y8 402 aa16.34■□□□□ 0.21
PRKDC-205ENST00000535375 ZNF692Q9BU19 519 aaPredicted RBP16.29■□□□□ 0.2
PRKDC-205ENST00000535375 SPDYE4A6NLX3 237 aa16.25■□□□□ 0.19
PRKDC-205ENST00000535375 REM2Q8IYK8 340 aaPredicted RBP16.25■□□□□ 0.19
PRKDC-205ENST00000535375 CHRDL2Q6WN34 429 aa16.21■□□□□ 0.19
PRKDC-205ENST00000535375 POTEHQ6S545 545 aa16.2■□□□□ 0.18
PRKDC-205ENST00000535375 FKBP8Q14318 412 aa16.18■□□□□ 0.18
PRKDC-205ENST00000535375 SSUH2Q9Y2M2 353 aa16.15■□□□□ 0.18
PRKDC-205ENST00000535375 PITPNM1O00562 1244 aa16.07■□□□□ 0.16
PRKDC-205ENST00000535375 PABPN1Q86U42 306 aaKnown RBP eCLIP16.05■□□□□ 0.16
PRKDC-205ENST00000535375 SPDYE1Q8NFV5 336 aaPredicted RBP15.98■□□□□ 0.15
PRKDC-205ENST00000535375 CLEC11AQ9Y240 323 aa15.94■□□□□ 0.14
PRKDC-205ENST00000535375 PIP4P2Q8N4L2 257 aa15.89■□□□□ 0.13
PRKDC-205ENST00000535375 PROM2Q8N271 834 aa15.86■□□□□ 0.13
PRKDC-205ENST00000535375 FXR2P51116 673 aaKnown RBP eCLIP15.84■□□□□ 0.134e-14■■■■■ 59.6
PRKDC-205ENST00000535375 STAG3Q9UJ98 1225 aa15.81■□□□□ 0.12
PRKDC-205ENST00000535375 PRR29P0C7W0 189 aa15.73■□□□□ 0.11
PRKDC-205ENST00000535375 FBXO3Q9UK99 471 aa15.69■□□□□ 0.1
PRKDC-205ENST00000535375 PRKAR2AP13861 404 aaKnown RBP15.68■□□□□ 0.1
PRKDC-205ENST00000535375 CHADLQ6NUI6 762 aa15.56■□□□□ 0.08
PRKDC-205ENST00000535375 HAX1O00165 279 aa15.54■□□□□ 0.08
PRKDC-205ENST00000535375 MIER1Q8N108 512 aa15.48■□□□□ 0.07
PRKDC-205ENST00000535375 PLEKHG5O94827 1062 aa15.46■□□□□ 0.07
PRKDC-205ENST00000535375 PLCD3Q8N3E9 789 aa15.45■□□□□ 0.06
PRKDC-205ENST00000535375 VASPP50552 380 aaPredicted RBP15.41■□□□□ 0.06
PRKDC-205ENST00000535375 CREBZFQ9NS37 354 aa15.39■□□□□ 0.05
PRKDC-205ENST00000535375 FARP1Q9Y4F1 1045 aaPredicted RBP15.38■□□□□ 0.05
PRKDC-205ENST00000535375 SP7Q8TDD2 431 aaPredicted RBP15.37■□□□□ 0.05
PRKDC-205ENST00000535375 C19orf67A6NJJ6 358 aa15.32■□□□□ 0.04
PRKDC-205ENST00000535375 EVX2Q03828 476 aa15.29■□□□□ 0.04
PRKDC-205ENST00000535375 ZBTB47Q9UFB7 747 aaPredicted RBP15.29■□□□□ 0.04
PRKDC-205ENST00000535375 KLHL34Q8N239 644 aa15.26■□□□□ 0.03
PRKDC-205ENST00000535375 NPM1P06748 294 aaKnown RBP eCLIP15.24■□□□□ 0.03
PRKDC-205ENST00000535375 CD44P16070 742 aaKnown RBP15.21■□□□□ 0.03
PRKDC-205ENST00000535375 MNX1P50219 401 aaPredicted RBP15.18■□□□□ 0.02
PRKDC-205ENST00000535375 IFNLR1Q8IU57 520 aaPredicted RBP15.16■□□□□ 0.02
PRKDC-205ENST00000535375 PAK3O75914 559 aaPredicted RBP15.06■□□□□ 0
PRKDC-205ENST00000535375 SPOCK2Q92563 424 aa15.06■□□□□ 0
PRKDC-205ENST00000535375 ZRANB1Q9UGI0 708 aa15.05■□□□□ -0
PRKDC-205ENST00000535375 GABBR2O75899 941 aa15.01□□□□□ -0.01
PRKDC-205ENST00000535375 NUBP1P53384 320 aa14.98□□□□□ -0.01
PRKDC-205ENST00000535375 ZNF579Q8NAF0 562 aaKnown RBP14.97□□□□□ -0.01
PRKDC-205ENST00000535375 RASEFQ8IZ41 740 aa14.96□□□□□ -0.01
PRKDC-205ENST00000535375 TSPYL2Q9H2G4 693 aaPredicted RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms