RNA–Protein interactions for RNA: ENST00000535147.5

DDB1-204, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 2,789 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-204ENST00000535147 NISCHQ9Y2I1 1504 aa20.67■□□□□ 0.9
DDB1-204ENST00000535147 SHROOM4Q9ULL8 1493 aa17.98■□□□□ 0.47
DDB1-204ENST00000535147 SUPT5HO00267 1087 aaKnown RBP17.73■□□□□ 0.43
DDB1-204ENST00000535147 ZCCHC6Q5VYS8 1495 aaKnown RBP17.51■□□□□ 0.39
DDB1-204ENST00000535147 CCDC180Q9P1Z9 1646 aa17.36■□□□□ 0.37
DDB1-204ENST00000535147 DCAF8L2P0C7V8 631 aa17.33■□□□□ 0.36
DDB1-204ENST00000535147 CHIC1Q5VXU3 224 aa17.25■□□□□ 0.35
DDB1-204ENST00000535147 MYO15BQ96JP2 1530 aa17.25■□□□□ 0.35
DDB1-204ENST00000535147 HRCP23327 699 aa17.05■□□□□ 0.32
DDB1-204ENST00000535147 PCGF6Q9BYE7 350 aa16.99■□□□□ 0.31
DDB1-204ENST00000535147 DCAF1Q9Y4B6 1507 aa16.85■□□□□ 0.29
DDB1-204ENST00000535147 LOC105371045A0A1W2PR82 267 aa16.84■□□□□ 0.29
DDB1-204ENST00000535147 PPARGC1BQ86YN6 1023 aaKnown RBP16.78■□□□□ 0.28
DDB1-204ENST00000535147 ABCC9O60706 1549 aa16.54■□□□□ 0.24
DDB1-204ENST00000535147 TRIM26Q12899 539 aaPredicted RBP16.52■□□□□ 0.23
DDB1-204ENST00000535147 RSF1Q96T23 1441 aaPredicted RBP16.48■□□□□ 0.23
DDB1-204ENST00000535147 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
DDB1-204ENST00000535147 TRIM41Q8WV44 630 aa16.43■□□□□ 0.22
DDB1-204ENST00000535147 FAM9AQ8IZU1 332 aaPredicted RBP16.4■□□□□ 0.22
DDB1-204ENST00000535147 RB1CC1Q8TDY2 1594 aa16.35■□□□□ 0.21
DDB1-204ENST00000535147 EHMT2Q96KQ7 1210 aa16.34■□□□□ 0.21
DDB1-204ENST00000535147 CECR2Q9BXF3 1484 aa16.21■□□□□ 0.19
DDB1-204ENST00000535147 ZEB1P37275 1124 aaPredicted RBP16.17■□□□□ 0.18
DDB1-204ENST00000535147 MROH2BQ7Z745 1585 aa16.14■□□□□ 0.17
DDB1-204ENST00000535147 NACADO15069 1562 aa16.05■□□□□ 0.16
DDB1-204ENST00000535147 WIZO95785 1651 aa16.05■□□□□ 0.16
DDB1-204ENST00000535147 SLC24A1O60721 1099 aa16.01■□□□□ 0.15
DDB1-204ENST00000535147 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.92■□□□□ 0.14
DDB1-204ENST00000535147 BAZ1AQ9NRL2 1556 aaPredicted RBP15.89■□□□□ 0.13
DDB1-204ENST00000535147 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
DDB1-204ENST00000535147 TTBK1Q5TCY1 1321 aaPredicted RBP15.85■□□□□ 0.13
DDB1-204ENST00000535147 CCER1Q8TC90 406 aaPredicted RBP15.85■□□□□ 0.13
DDB1-204ENST00000535147 EIF4G1Q04637 1599 aaKnown RBP15.85■□□□□ 0.13
DDB1-204ENST00000535147 ABCC8Q09428 1581 aa15.82■□□□□ 0.12
DDB1-204ENST00000535147 CCDC88BA6NC98 1476 aa15.79■□□□□ 0.12
DDB1-204ENST00000535147 TOP2AP11388 1531 aaKnown RBP15.73■□□□□ 0.11
DDB1-204ENST00000535147 SOGA1O94964 1423 aa15.72■□□□□ 0.11
DDB1-204ENST00000535147 CEP162Q5TB80 1403 aa15.7■□□□□ 0.1
DDB1-204ENST00000535147 SMARCA4P51532 1647 aa15.69■□□□□ 0.1
DDB1-204ENST00000535147 SMARCA2P51531 1590 aa15.68■□□□□ 0.1
DDB1-204ENST00000535147 WRNQ14191 1432 aaPredicted RBP eCLIP15.66■□□□□ 0.1
DDB1-204ENST00000535147 RUSC2Q8N2Y8 1516 aa15.65■□□□□ 0.1
DDB1-204ENST00000535147 UBTFP17480 764 aaKnown RBP15.64■□□□□ 0.09
DDB1-204ENST00000535147 NEUROD1Q13562 356 aa15.63■□□□□ 0.09
DDB1-204ENST00000535147 DIEXFQ68CQ4 756 aaKnown RBP15.63■□□□□ 0.09
DDB1-204ENST00000535147 CSRNP3Q8WYN3 585 aa15.63■□□□□ 0.09
DDB1-204ENST00000535147 TNIKQ9UKE5 1360 aa15.62■□□□□ 0.09
DDB1-204ENST00000535147 PELP1Q8IZL8 1130 aaKnown RBP15.62■□□□□ 0.09
DDB1-204ENST00000535147 ACIN1Q9UKV3 1341 aaKnown RBP15.62■□□□□ 0.09
DDB1-204ENST00000535147 UNC13AQ9UPW8 1703 aa15.56■□□□□ 0.08
DDB1-204ENST00000535147 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
DDB1-204ENST00000535147 EEA1Q15075 1411 aa15.52■□□□□ 0.08
DDB1-204ENST00000535147 GTF3C3Q9Y5Q9 886 aa15.49■□□□□ 0.07
DDB1-204ENST00000535147 GOLGA3Q08378 1498 aa15.49■□□□□ 0.07
DDB1-204ENST00000535147 CENPBP07199 599 aaPredicted RBP15.47■□□□□ 0.07
DDB1-204ENST00000535147 HNRNPUL2Q1KMD3 747 aaKnown RBP15.45■□□□□ 0.06
DDB1-204ENST00000535147 ZNF316A6NFI3 1004 aaPredicted RBP15.43■□□□□ 0.06
DDB1-204ENST00000535147 RANGAP1P46060 587 aaPredicted RBP15.39■□□□□ 0.05
DDB1-204ENST00000535147 SYNJ1O43426 1573 aa15.39■□□□□ 0.05
DDB1-204ENST00000535147 BICRAQ9NZM4 1560 aa15.39■□□□□ 0.05
DDB1-204ENST00000535147 CEP164Q9UPV0 1460 aa15.37■□□□□ 0.05
DDB1-204ENST00000535147 CLIP1P30622 1438 aa15.37■□□□□ 0.05
DDB1-204ENST00000535147 YTHDC1Q96MU7 727 aaKnown RBP15.36■□□□□ 0.05
DDB1-204ENST00000535147 PEG3Q9GZU2 1588 aa15.31■□□□□ 0.04
DDB1-204ENST00000535147 KIF21BO75037 1637 aa15.31■□□□□ 0.04
DDB1-204ENST00000535147 MIER1Q8N108 512 aa15.3■□□□□ 0.04
DDB1-204ENST00000535147 RAPGEF2Q9Y4G8 1499 aa15.3■□□□□ 0.04
DDB1-204ENST00000535147 VPS8Q8N3P4 1428 aa15.29■□□□□ 0.04
DDB1-204ENST00000535147 APLP2Q06481 763 aa15.29■□□□□ 0.04
DDB1-204ENST00000535147 ATAD2BQ9ULI0 1458 aa15.27■□□□□ 0.04
DDB1-204ENST00000535147 BAZ1BQ9UIG0 1483 aaKnown RBP15.25■□□□□ 0.03
DDB1-204ENST00000535147 TOP2BQ02880 1626 aa15.13■□□□□ 0.01
DDB1-204ENST00000535147 KANK4Q5T7N3 995 aaPredicted RBP15.12■□□□□ 0.01
DDB1-204ENST00000535147 DHX57Q6P158 1386 aaKnown RBP15.08■□□□□ 0
DDB1-204ENST00000535147 ARAP1Q96P48 1450 aa15.07■□□□□ 0
DDB1-204ENST00000535147 PRXQ9BXM0 1461 aa15.07■□□□□ 0
DDB1-204ENST00000535147 BIVM-ERCC5R4GMW8 1640 aa15.03■□□□□ -0
DDB1-204ENST00000535147 ERICH3Q5RHP9 1530 aa15.02■□□□□ -0
DDB1-204ENST00000535147 CLSPNQ9HAW4 1339 aa15.01□□□□□ -0.01
DDB1-204ENST00000535147 ITGAEP38570 1179 aa15□□□□□ -0.01
DDB1-204ENST00000535147 CUX1P39880 1505 aa14.99□□□□□ -0.01
DDB1-204ENST00000535147 KIF27Q86VH2 1401 aa14.96□□□□□ -0.01
DDB1-204ENST00000535147 RRBP1Q9P2E9 1410 aaKnown RBP14.95□□□□□ -0.02
DDB1-204ENST00000535147 ARHGAP35Q9NRY4 1499 aa14.92□□□□□ -0.02
DDB1-204ENST00000535147 CCNB3Q8WWL7 1395 aa14.92□□□□□ -0.02
DDB1-204ENST00000535147 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
DDB1-204ENST00000535147 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
DDB1-204ENST00000535147 CFTRP13569 1480 aa14.86□□□□□ -0.03
DDB1-204ENST00000535147 CUX2O14529 1486 aa14.85□□□□□ -0.03
DDB1-204ENST00000535147 SUPT16HQ9Y5B9 1047 aaKnown RBP14.85□□□□□ -0.03
DDB1-204ENST00000535147 RAB3GAP2Q9H2M9 1393 aa14.84□□□□□ -0.03
DDB1-204ENST00000535147 KCNH8Q96L42 1107 aa14.83□□□□□ -0.04
DDB1-204ENST00000535147 IGF1RP08069 1367 aa14.82□□□□□ -0.04
DDB1-204ENST00000535147 MYT1Q01538 1121 aa14.81□□□□□ -0.04
DDB1-204ENST00000535147 MAPKBP1O60336 1514 aa14.78□□□□□ -0.04
DDB1-204ENST00000535147 P3H3Q8IVL6 736 aa14.77□□□□□ -0.04
DDB1-204ENST00000535147 FAM50AQ14320 339 aaKnown RBP14.76□□□□□ -0.05
DDB1-204ENST00000535147 SIN3AQ96ST3 1273 aa14.76□□□□□ -0.05
DDB1-204ENST00000535147 TIAM1Q13009 1591 aa14.76□□□□□ -0.05
DDB1-204ENST00000535147 CARMIL1Q5VZK9 1371 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms