RNA–Protein interactions for RNA: ENST00000532881.5

SSH3-210, Transcript of slingshot protein phosphatase 3, humanhuman

TSL 1 (best)

Gene SSH3, Length 2,587 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH3-210ENST00000532881 NISCHQ9Y2I1 1504 aa30.75■■■□□ 2.51
SSH3-210ENST00000532881 SHROOM4Q9ULL8 1493 aa26.72■■□□□ 1.87
SSH3-210ENST00000532881 SUPT5HO00267 1087 aaKnown RBP26.18■■□□□ 1.78
SSH3-210ENST00000532881 DCAF8L2P0C7V8 631 aa26.03■■□□□ 1.76
SSH3-210ENST00000532881 ZCCHC6Q5VYS8 1495 aaKnown RBP25.97■■□□□ 1.75
SSH3-210ENST00000532881 CCDC180Q9P1Z9 1646 aa25.9■■□□□ 1.74
SSH3-210ENST00000532881 CHIC1Q5VXU3 224 aa25.27■■□□□ 1.64
SSH3-210ENST00000532881 MYO15BQ96JP2 1530 aa25.25■■□□□ 1.63
SSH3-210ENST00000532881 DCAF1Q9Y4B6 1507 aa24.97■■□□□ 1.59
SSH3-210ENST00000532881 LOC105371045A0A1W2PR82 267 aa24.75■■□□□ 1.55
SSH3-210ENST00000532881 SCRIBQ14160 1630 aa24.67■■□□□ 1.54
SSH3-210ENST00000532881 PCGF6Q9BYE7 350 aa24.65■■□□□ 1.54
SSH3-210ENST00000532881 ABCC9O60706 1549 aa24.49■■□□□ 1.51
SSH3-210ENST00000532881 HRCP23327 699 aa24.45■■□□□ 1.5
SSH3-210ENST00000532881 RSF1Q96T23 1441 aaPredicted RBP24.44■■□□□ 1.5
SSH3-210ENST00000532881 PPARGC1BQ86YN6 1023 aaKnown RBP24.29■■□□□ 1.48
SSH3-210ENST00000532881 EHMT2Q96KQ7 1210 aa24.28■■□□□ 1.48
SSH3-210ENST00000532881 FAM9AQ8IZU1 332 aaPredicted RBP24.28■■□□□ 1.48
SSH3-210ENST00000532881 RB1CC1Q8TDY2 1594 aa24.24■■□□□ 1.47
SSH3-210ENST00000532881 CECR2Q9BXF3 1484 aa24.21■■□□□ 1.47
SSH3-210ENST00000532881 TRIM41Q8WV44 630 aa24.2■■□□□ 1.47
SSH3-210ENST00000532881 MROH2BQ7Z745 1585 aa24.05■■□□□ 1.44
SSH3-210ENST00000532881 NACADO15069 1562 aa24.02■■□□□ 1.44
SSH3-210ENST00000532881 TRIM26Q12899 539 aaPredicted RBP23.94■■□□□ 1.42
SSH3-210ENST00000532881 WIZO95785 1651 aa23.93■■□□□ 1.42
SSH3-210ENST00000532881 PABPN1Q86U42 306 aaKnown RBP eCLIP23.57■■□□□ 1.36
SSH3-210ENST00000532881 BAZ1AQ9NRL2 1556 aaPredicted RBP23.57■■□□□ 1.36
SSH3-210ENST00000532881 ABCC8Q09428 1581 aa23.49■■□□□ 1.35
SSH3-210ENST00000532881 UNC13AQ9UPW8 1703 aa23.45■■□□□ 1.34
SSH3-210ENST00000532881 TTBK1Q5TCY1 1321 aaPredicted RBP23.44■■□□□ 1.34
SSH3-210ENST00000532881 CCDC88BA6NC98 1476 aa23.43■■□□□ 1.34
SSH3-210ENST00000532881 EIF4G1Q04637 1599 aaKnown RBP23.42■■□□□ 1.34
SSH3-210ENST00000532881 SMARCA4P51532 1647 aa23.41■■□□□ 1.34
SSH3-210ENST00000532881 TOP2AP11388 1531 aaKnown RBP23.36■■□□□ 1.33
SSH3-210ENST00000532881 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
SSH3-210ENST00000532881 SOGA1O94964 1423 aa23.28■■□□□ 1.32
SSH3-210ENST00000532881 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.25■■□□□ 1.31
SSH3-210ENST00000532881 RUSC2Q8N2Y8 1516 aa23.22■■□□□ 1.31
SSH3-210ENST00000532881 ZEB1P37275 1124 aaPredicted RBP23.22■■□□□ 1.31
SSH3-210ENST00000532881 BICRAQ9NZM4 1560 aa23.17■■□□□ 1.3
SSH3-210ENST00000532881 UBTFP17480 764 aaKnown RBP23.11■■□□□ 1.29
SSH3-210ENST00000532881 CEP162Q5TB80 1403 aa23.06■■□□□ 1.28
SSH3-210ENST00000532881 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
SSH3-210ENST00000532881 CCER1Q8TC90 406 aaPredicted RBP23.05■■□□□ 1.28
SSH3-210ENST00000532881 RANGAP1P46060 587 aaPredicted RBP22.95■■□□□ 1.26
SSH3-210ENST00000532881 WRNQ14191 1432 aaPredicted RBP eCLIP22.94■■□□□ 1.26
SSH3-210ENST00000532881 TNIKQ9UKE5 1360 aa22.92■■□□□ 1.26
SSH3-210ENST00000532881 ATAD2BQ9ULI0 1458 aa22.86■■□□□ 1.25
SSH3-210ENST00000532881 SYNJ1O43426 1573 aa22.86■■□□□ 1.25
SSH3-210ENST00000532881 BAZ1BQ9UIG0 1483 aaKnown RBP22.8■■□□□ 1.24
SSH3-210ENST00000532881 PEG3Q9GZU2 1588 aa22.8■■□□□ 1.24
SSH3-210ENST00000532881 GOLGA3Q08378 1498 aa22.78■■□□□ 1.24
SSH3-210ENST00000532881 EEA1Q15075 1411 aa22.77■■□□□ 1.24
SSH3-210ENST00000532881 HNRNPUL2Q1KMD3 747 aaKnown RBP22.7■■□□□ 1.22
SSH3-210ENST00000532881 SCAF1Q9H7N4 1312 aaKnown RBP22.67■■□□□ 1.22
SSH3-210ENST00000532881 RAPGEF2Q9Y4G8 1499 aa22.65■■□□□ 1.22
SSH3-210ENST00000532881 CEP164Q9UPV0 1460 aa22.63■■□□□ 1.21
SSH3-210ENST00000532881 CLIP1P30622 1438 aa22.62■■□□□ 1.21
SSH3-210ENST00000532881 DIEXFQ68CQ4 756 aaKnown RBP22.56■■□□□ 1.2
SSH3-210ENST00000532881 KIF21BO75037 1637 aa22.53■■□□□ 1.2
SSH3-210ENST00000532881 APLP2Q06481 763 aa22.46■■□□□ 1.19
SSH3-210ENST00000532881 VPS8Q8N3P4 1428 aa22.45■■□□□ 1.18
SSH3-210ENST00000532881 NEUROD1Q13562 356 aa22.45■■□□□ 1.18
SSH3-210ENST00000532881 TOP2BQ02880 1626 aa22.44■■□□□ 1.18
SSH3-210ENST00000532881 KANK4Q5T7N3 995 aaPredicted RBP22.35■■□□□ 1.17
SSH3-210ENST00000532881 CUX1P39880 1505 aa22.34■■□□□ 1.17
SSH3-210ENST00000532881 ACIN1Q9UKV3 1341 aaKnown RBP22.33■■□□□ 1.17
SSH3-210ENST00000532881 ZNF316A6NFI3 1004 aaPredicted RBP22.33■■□□□ 1.16
SSH3-210ENST00000532881 NCAPD3P42695 1498 aa22.32■■□□□ 1.16
SSH3-210ENST00000532881 BIVM-ERCC5R4GMW8 1640 aa22.3■■□□□ 1.16
SSH3-210ENST00000532881 PRXQ9BXM0 1461 aa22.27■■□□□ 1.16
SSH3-210ENST00000532881 YTHDC1Q96MU7 727 aaKnown RBP22.27■■□□□ 1.16
SSH3-210ENST00000532881 ARAP1Q96P48 1450 aa22.24■■□□□ 1.15
SSH3-210ENST00000532881 HMGXB3Q12766 1538 aa22.23■■□□□ 1.15
SSH3-210ENST00000532881 GTF3C3Q9Y5Q9 886 aa22.2■■□□□ 1.14
SSH3-210ENST00000532881 CFTRP13569 1480 aa22.19■■□□□ 1.14
SSH3-210ENST00000532881 ITGAEP38570 1179 aa22.18■■□□□ 1.14
SSH3-210ENST00000532881 KIF27Q86VH2 1401 aa22.17■■□□□ 1.14
SSH3-210ENST00000532881 MIER1Q8N108 512 aa22.17■■□□□ 1.14
SSH3-210ENST00000532881 ERICH3Q5RHP9 1530 aa22.14■■□□□ 1.13
SSH3-210ENST00000532881 CENPBP07199 599 aaPredicted RBP22.09■■□□□ 1.13
SSH3-210ENST00000532881 CUX2O14529 1486 aa22.07■■□□□ 1.12
SSH3-210ENST00000532881 ARHGAP35Q9NRY4 1499 aa22.06■■□□□ 1.12
SSH3-210ENST00000532881 P3H3Q8IVL6 736 aa22.05■■□□□ 1.12
SSH3-210ENST00000532881 IGF1RP08069 1367 aa22.03■■□□□ 1.12
SSH3-210ENST00000532881 DHX57Q6P158 1386 aaKnown RBP22.03■■□□□ 1.12
SSH3-210ENST00000532881 CADPSQ9ULU8 1353 aa21.99■■□□□ 1.11
SSH3-210ENST00000532881 ATP1B4Q9UN42 357 aaPredicted RBP21.97■■□□□ 1.11
SSH3-210ENST00000532881 FGD5Q6ZNL6 1462 aa21.96■■□□□ 1.11
SSH3-210ENST00000532881 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
SSH3-210ENST00000532881 CCNB3Q8WWL7 1395 aa21.9■■□□□ 1.1
SSH3-210ENST00000532881 RRBP1Q9P2E9 1410 aaKnown RBP21.89■■□□□ 1.1
SSH3-210ENST00000532881 CC2D2AQ9P2K1 1620 aa21.88■■□□□ 1.09
SSH3-210ENST00000532881 RAD54L2Q9Y4B4 1467 aa21.86■■□□□ 1.09
SSH3-210ENST00000532881 NESP48681 1621 aa21.84■■□□□ 1.09
SSH3-210ENST00000532881 FAM50AQ14320 339 aaKnown RBP21.82■■□□□ 1.08
SSH3-210ENST00000532881 PRDM2Q13029 1718 aa21.82■■□□□ 1.08
SSH3-210ENST00000532881 FANCD2Q9BXW9 1451 aa21.81■■□□□ 1.08
SSH3-210ENST00000532881 PHLDB1Q86UU1 1377 aa21.77■■□□□ 1.08
SSH3-210ENST00000532881 RAB3GAP2Q9H2M9 1393 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms