RNA–Protein interactions for RNA: ENST00000530566.1

POLB-216, Transcript of DNA polymerase beta, humanhuman

TSL 4

Gene POLB, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLB-216ENST00000530566 AEBP2Q6ZN18 517 aaPredicted RBP30.32■■■□□ 2.44
POLB-216ENST00000530566 CHIC1Q5VXU3 224 aa29.06■■■□□ 2.24
POLB-216ENST00000530566 SENP3Q9H4L4 574 aaPredicted RBP26.01■■□□□ 1.75
POLB-216ENST00000530566 PHF23Q9BUL5 403 aaPredicted RBP25.63■■□□□ 1.69
POLB-216ENST00000530566 FOXD1Q16676 465 aa24.11■■□□□ 1.45
POLB-216ENST00000530566 PLPPR3Q6T4P5 718 aa23.37■■□□□ 1.33
POLB-216ENST00000530566 MSH5O43196 834 aa22.64■■□□□ 1.21
POLB-216ENST00000530566 PIAS4Q8N2W9 510 aaPredicted RBP22.63■■□□□ 1.21
POLB-216ENST00000530566 PPP6R1Q9UPN7 881 aa22.62■■□□□ 1.21
POLB-216ENST00000530566 ADRA2BP18089 450 aa22.58■■□□□ 1.21
POLB-216ENST00000530566 POTEDQ86YR6 584 aa21.69■■□□□ 1.06
POLB-216ENST00000530566 SCAF1Q9H7N4 1312 aaKnown RBP20.86■□□□□ 0.93
POLB-216ENST00000530566 MAPK8IP2Q13387 824 aaPredicted RBP20.67■□□□□ 0.9
POLB-216ENST00000530566 DMRT2Q9Y5R5 561 aa20.61■□□□□ 0.89
POLB-216ENST00000530566 PPP4R3CPQ6ZMV5 832 aa20.44■□□□□ 0.86
POLB-216ENST00000530566 CNKSR2Q8WXI2 1034 aa20.07■□□□□ 0.8
POLB-216ENST00000530566 HOXD11P31277 338 aaPredicted RBP19.91■□□□□ 0.78
POLB-216ENST00000530566 RNF216Q9NWF9 866 aaPredicted RBP19.85■□□□□ 0.77
POLB-216ENST00000530566 NCBP3Q53F19 620 aaKnown RBP19.82■□□□□ 0.76
POLB-216ENST00000530566 DCAF8L1A6NGE4 600 aa19.78■□□□□ 0.76
POLB-216ENST00000530566 NISCHQ9Y2I1 1504 aa19.66■□□□□ 0.74
POLB-216ENST00000530566 NPM3O75607 178 aaKnown RBP19.4■□□□□ 0.7
POLB-216ENST00000530566 CACNB1Q02641 598 aaPredicted RBP19.29■□□□□ 0.68
POLB-216ENST00000530566 DNAJC5BQ9UF47 199 aa19.28■□□□□ 0.68
POLB-216ENST00000530566 RNF39Q9H2S5 420 aa19.25■□□□□ 0.67
POLB-216ENST00000530566 KCNA4P22459 653 aa19.14■□□□□ 0.65
POLB-216ENST00000530566 ABCC9O60706 1549 aa19.14■□□□□ 0.65
POLB-216ENST00000530566 C1QBPQ07021 282 aaKnown RBP19.06■□□□□ 0.64
POLB-216ENST00000530566 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.03■□□□□ 0.64
POLB-216ENST00000530566 U3KPZ7 1027 aaPredicted RBP18.55■□□□□ 0.56
POLB-216ENST00000530566 SLC4A2P04920 1241 aa18.44■□□□□ 0.54
POLB-216ENST00000530566 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.27■□□□□ 0.52
POLB-216ENST00000530566 CAPN15O75808 1086 aa18.27■□□□□ 0.52
POLB-216ENST00000530566 APLP2Q06481 763 aa18.27■□□□□ 0.52
POLB-216ENST00000530566 HNRNPUL2Q1KMD3 747 aaKnown RBP18.27■□□□□ 0.52
POLB-216ENST00000530566 SPINK5Q9NQ38 1064 aaPredicted RBP18.21■□□□□ 0.51
POLB-216ENST00000530566 SLC4A1APQ9BWU0 796 aaKnown RBP18.18■□□□□ 0.5
POLB-216ENST00000530566 SAMD1Q6SPF0 538 aaPredicted RBP18.13■□□□□ 0.49
POLB-216ENST00000530566 DNAJC5Q9H3Z4 198 aa18.1■□□□□ 0.49
POLB-216ENST00000530566 CCDC180Q9P1Z9 1646 aa18.08■□□□□ 0.48
POLB-216ENST00000530566 DSG3P32926 999 aa18.07■□□□□ 0.48
POLB-216ENST00000530566 ZNF219Q9P2Y4 722 aaPredicted RBP18.04■□□□□ 0.48
POLB-216ENST00000530566 MYCNP04198 464 aaPredicted RBP18.01■□□□□ 0.47
POLB-216ENST00000530566 TRHP20396 242 aaPredicted RBP18■□□□□ 0.47
POLB-216ENST00000530566 FOXD4L1Q9NU39 408 aa17.9■□□□□ 0.46
POLB-216ENST00000530566 ABCB7O75027 752 aa17.79■□□□□ 0.44
POLB-216ENST00000530566 RB1CC1Q8TDY2 1594 aa17.74■□□□□ 0.43
POLB-216ENST00000530566 PABPN1Q86U42 306 aaKnown RBP eCLIP17.68■□□□□ 0.42
POLB-216ENST00000530566 POLA2Q14181 598 aa17.55■□□□□ 0.4
POLB-216ENST00000530566 ZBTB22O15209 634 aa17.54■□□□□ 0.4
POLB-216ENST00000530566 ATF5Q9Y2D1 282 aaPredicted RBP17.44■□□□□ 0.38
POLB-216ENST00000530566 ATXN8OSP0DMR3 200 aa17.38■□□□□ 0.37
POLB-216ENST00000530566 RBM42Q9BTD8 480 aaKnown RBP17.37■□□□□ 0.37
POLB-216ENST00000530566 NACADO15069 1562 aa17.36■□□□□ 0.37
POLB-216ENST00000530566 CECR2Q9BXF3 1484 aa17.35■□□□□ 0.37
POLB-216ENST00000530566 ZBTB12Q9Y330 459 aaPredicted RBP17.33■□□□□ 0.36
POLB-216ENST00000530566 UNC13AQ9UPW8 1703 aa17.27■□□□□ 0.35
POLB-216ENST00000530566 BICRAQ9NZM4 1560 aa17.22■□□□□ 0.35
POLB-216ENST00000530566 CC2D2AQ9P2K1 1620 aa17.21■□□□□ 0.35
POLB-216ENST00000530566 DCAF8L2P0C7V8 631 aa17.18■□□□□ 0.34
POLB-216ENST00000530566 POTEHQ6S545 545 aa17.08■□□□□ 0.32
POLB-216ENST00000530566 FBLN2P98095 1184 aa16.95■□□□□ 0.3
POLB-216ENST00000530566 OSCARQ8IYS5 282 aa16.95■□□□□ 0.3
POLB-216ENST00000530566 AKT1S1Q96B36 256 aa16.95■□□□□ 0.3
POLB-216ENST00000530566 TRIM41Q8WV44 630 aa16.93■□□□□ 0.3
POLB-216ENST00000530566 CSRNP3Q8WYN3 585 aa16.93■□□□□ 0.3
POLB-216ENST00000530566 EIF4G1Q04637 1599 aaKnown RBP16.91■□□□□ 0.3
POLB-216ENST00000530566 CUX2O14529 1486 aa16.91■□□□□ 0.3
POLB-216ENST00000530566 SHROOM4Q9ULL8 1493 aa16.91■□□□□ 0.3
POLB-216ENST00000530566 EHMT2Q96KQ7 1210 aa16.84■□□□□ 0.29
POLB-216ENST00000530566 CHRDL2Q6WN34 429 aa16.83■□□□□ 0.28
POLB-216ENST00000530566 MYO15BQ96JP2 1530 aa16.75■□□□□ 0.27
POLB-216ENST00000530566 SPDYE2BA6NHP3 402 aa16.74■□□□□ 0.27
POLB-216ENST00000530566 SPDYE6P0CI01 402 aa16.74■□□□□ 0.27
POLB-216ENST00000530566 SPDYE2Q495Y8 402 aa16.74■□□□□ 0.27
POLB-216ENST00000530566 REM2Q8IYK8 340 aaPredicted RBP16.74■□□□□ 0.27
POLB-216ENST00000530566 MKRN4PQ13434 485 aaPredicted RBP16.67■□□□□ 0.26
POLB-216ENST00000530566 ERCC6Q03468 1493 aa16.63■□□□□ 0.25
POLB-216ENST00000530566 ZNF692Q9BU19 519 aaPredicted RBP16.55■□□□□ 0.24
POLB-216ENST00000530566 PITPNM1O00562 1244 aa16.54■□□□□ 0.24
POLB-216ENST00000530566 SSUH2Q9Y2M2 353 aa16.48■□□□□ 0.23
POLB-216ENST00000530566 SCRIBQ14160 1630 aa16.46■□□□□ 0.23
POLB-216ENST00000530566 PIP4P2Q8N4L2 257 aa16.43■□□□□ 0.22
POLB-216ENST00000530566 SPDYE1Q8NFV5 336 aaPredicted RBP16.43■□□□□ 0.22
POLB-216ENST00000530566 FXR2P51116 673 aaKnown RBP eCLIP16.38■□□□□ 0.21
POLB-216ENST00000530566 CLEC11AQ9Y240 323 aa16.35■□□□□ 0.21
POLB-216ENST00000530566 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
POLB-216ENST00000530566 HAX1O00165 279 aa16.15■□□□□ 0.18
POLB-216ENST00000530566 PRKAR2AP13861 404 aaKnown RBP16.15■□□□□ 0.18
POLB-216ENST00000530566 THOC2Q8NI27 1593 aaKnown RBP16.13■□□□□ 0.17
POLB-216ENST00000530566 PRR29P0C7W0 189 aa16.13■□□□□ 0.17
POLB-216ENST00000530566 NESP48681 1621 aa16.12■□□□□ 0.17
POLB-216ENST00000530566 SP7Q8TDD2 431 aaPredicted RBP16.1■□□□□ 0.17
POLB-216ENST00000530566 SPDYE4A6NLX3 237 aa16.07■□□□□ 0.16
POLB-216ENST00000530566 ZCCHC6Q5VYS8 1495 aaKnown RBP16.05■□□□□ 0.16
POLB-216ENST00000530566 NCAPD3P42695 1498 aa16.04■□□□□ 0.16
POLB-216ENST00000530566 SMARCA2P51531 1590 aa15.99■□□□□ 0.15
POLB-216ENST00000530566 STAG3Q9UJ98 1225 aa15.98■□□□□ 0.15
POLB-216ENST00000530566 BAZ1AQ9NRL2 1556 aaPredicted RBP15.96■□□□□ 0.14
POLB-216ENST00000530566 CHADLQ6NUI6 762 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms