RNA–Protein interactions for RNA: ENST00000530253.5

CCDC90B-217, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 2

Gene CCDC90B, Length 776 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-217ENST00000530253 AEBP2Q6ZN18 517 aaPredicted RBP41.13■■■■■ 4.17
CCDC90B-217ENST00000530253 CHIC1Q5VXU3 224 aa39.26■■■■□ 3.88
CCDC90B-217ENST00000530253 SENP3Q9H4L4 574 aaPredicted RBP35.31■■■■□ 3.24
CCDC90B-217ENST00000530253 PHF23Q9BUL5 403 aaPredicted RBP34.74■■■■□ 3.15
CCDC90B-217ENST00000530253 FOXD1Q16676 465 aa32.74■■■□□ 2.83
CCDC90B-217ENST00000530253 PLPPR3Q6T4P5 718 aa31.5■■■□□ 2.63
CCDC90B-217ENST00000530253 MSH5O43196 834 aa30.81■■■□□ 2.52
CCDC90B-217ENST00000530253 PIAS4Q8N2W9 510 aaPredicted RBP30.7■■■□□ 2.51
CCDC90B-217ENST00000530253 PPP6R1Q9UPN7 881 aa30.57■■■□□ 2.48
CCDC90B-217ENST00000530253 ADRA2BP18089 450 aa30.52■■■□□ 2.48
CCDC90B-217ENST00000530253 POTEDQ86YR6 584 aa29.78■■■□□ 2.36
CCDC90B-217ENST00000530253 SCAF1Q9H7N4 1312 aaKnown RBP28.2■■■□□ 2.11
CCDC90B-217ENST00000530253 MAPK8IP2Q13387 824 aaPredicted RBP27.96■■■□□ 2.07
CCDC90B-217ENST00000530253 DMRT2Q9Y5R5 561 aa27.95■■■□□ 2.06
CCDC90B-217ENST00000530253 PPP4R3CPQ6ZMV5 832 aa27.53■■■□□ 2
CCDC90B-217ENST00000530253 CNKSR2Q8WXI2 1034 aa27.07■■□□□ 1.92
CCDC90B-217ENST00000530253 HOXD11P31277 338 aaPredicted RBP26.95■■□□□ 1.9
CCDC90B-217ENST00000530253 RNF216Q9NWF9 866 aaPredicted RBP26.81■■□□□ 1.88
CCDC90B-217ENST00000530253 DCAF8L1A6NGE4 600 aa26.8■■□□□ 1.88
CCDC90B-217ENST00000530253 NCBP3Q53F19 620 aaKnown RBP26.65■■□□□ 1.86
CCDC90B-217ENST00000530253 CACNB1Q02641 598 aaPredicted RBP26.32■■□□□ 1.8
CCDC90B-217ENST00000530253 RNF39Q9H2S5 420 aa26.19■■□□□ 1.78
CCDC90B-217ENST00000530253 DNAJC5BQ9UF47 199 aa26.14■■□□□ 1.78
CCDC90B-217ENST00000530253 NPM3O75607 178 aaKnown RBP26.08■■□□□ 1.77
CCDC90B-217ENST00000530253 C1QBPQ07021 282 aaKnown RBP25.9■■□□□ 1.74
CCDC90B-217ENST00000530253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.72■■□□□ 1.71
CCDC90B-217ENST00000530253 KCNA4P22459 653 aa25.6■■□□□ 1.69
CCDC90B-217ENST00000530253 U3KPZ7 1027 aaPredicted RBP25.09■■□□□ 1.61
CCDC90B-217ENST00000530253 SLC4A2P04920 1241 aa24.83■■□□□ 1.57
CCDC90B-217ENST00000530253 CAPN15O75808 1086 aa24.73■■□□□ 1.55
CCDC90B-217ENST00000530253 APLP2Q06481 763 aa24.7■■□□□ 1.54
CCDC90B-217ENST00000530253 SPINK5Q9NQ38 1064 aaPredicted RBP24.66■■□□□ 1.54
CCDC90B-217ENST00000530253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.64■■□□□ 1.54
CCDC90B-217ENST00000530253 HNRNPUL2Q1KMD3 747 aaKnown RBP24.64■■□□□ 1.54
CCDC90B-217ENST00000530253 DSG3P32926 999 aa24.52■■□□□ 1.52
CCDC90B-217ENST00000530253 SAMD1Q6SPF0 538 aaPredicted RBP24.45■■□□□ 1.5
CCDC90B-217ENST00000530253 ZNF219Q9P2Y4 722 aaPredicted RBP24.41■■□□□ 1.5
CCDC90B-217ENST00000530253 TRHP20396 242 aaPredicted RBP24.32■■□□□ 1.48
CCDC90B-217ENST00000530253 SLC4A1APQ9BWU0 796 aaKnown RBP24.28■■□□□ 1.48
CCDC90B-217ENST00000530253 MYCNP04198 464 aaPredicted RBP24.24■■□□□ 1.47
CCDC90B-217ENST00000530253 ABCB7O75027 752 aa24.09■■□□□ 1.45
CCDC90B-217ENST00000530253 FOXD4L1Q9NU39 408 aa23.99■■□□□ 1.43
CCDC90B-217ENST00000530253 POLA2Q14181 598 aa23.67■■□□□ 1.38
CCDC90B-217ENST00000530253 RBM42Q9BTD8 480 aaKnown RBP23.58■■□□□ 1.37
CCDC90B-217ENST00000530253 ZBTB22O15209 634 aa23.46■■□□□ 1.35
CCDC90B-217ENST00000530253 ATF5Q9Y2D1 282 aaPredicted RBP23.45■■□□□ 1.34
CCDC90B-217ENST00000530253 ZBTB12Q9Y330 459 aaPredicted RBP23.41■■□□□ 1.34
CCDC90B-217ENST00000530253 POTEHQ6S545 545 aa23.4■■□□□ 1.34
CCDC90B-217ENST00000530253 ATXN8OSP0DMR3 200 aa23.32■■□□□ 1.32
CCDC90B-217ENST00000530253 AKT1S1Q96B36 256 aa22.98■■□□□ 1.27
CCDC90B-217ENST00000530253 CHRDL2Q6WN34 429 aa22.91■■□□□ 1.26
CCDC90B-217ENST00000530253 OSCARQ8IYS5 282 aa22.91■■□□□ 1.26
CCDC90B-217ENST00000530253 FBLN2P98095 1184 aa22.81■■□□□ 1.24
CCDC90B-217ENST00000530253 REM2Q8IYK8 340 aaPredicted RBP22.68■■□□□ 1.22
CCDC90B-217ENST00000530253 SPDYE2BA6NHP3 402 aa22.6■■□□□ 1.21
CCDC90B-217ENST00000530253 SPDYE6P0CI01 402 aa22.6■■□□□ 1.21
CCDC90B-217ENST00000530253 SPDYE2Q495Y8 402 aa22.6■■□□□ 1.21
CCDC90B-217ENST00000530253 CSRNP3Q8WYN3 585 aa22.49■■□□□ 1.19
CCDC90B-217ENST00000530253 PITPNM1O00562 1244 aa22.42■■□□□ 1.18
CCDC90B-217ENST00000530253 MKRN4PQ13434 485 aaPredicted RBP22.41■■□□□ 1.18
CCDC90B-217ENST00000530253 PIP4P2Q8N4L2 257 aa22.33■■□□□ 1.17
CCDC90B-217ENST00000530253 ZNF692Q9BU19 519 aaPredicted RBP22.29■■□□□ 1.16
CCDC90B-217ENST00000530253 EHMT2Q96KQ7 1210 aa22.27■■□□□ 1.16
CCDC90B-217ENST00000530253 FXR2P51116 673 aaKnown RBP eCLIP22.24■■□□□ 1.15
CCDC90B-217ENST00000530253 SSUH2Q9Y2M2 353 aa22.23■■□□□ 1.15
CCDC90B-217ENST00000530253 SPDYE1Q8NFV5 336 aaPredicted RBP22.2■■□□□ 1.14
CCDC90B-217ENST00000530253 CLEC11AQ9Y240 323 aa22.07■■□□□ 1.12
CCDC90B-217ENST00000530253 SP7Q8TDD2 431 aaPredicted RBP22■■□□□ 1.11
CCDC90B-217ENST00000530253 HAX1O00165 279 aa21.96■■□□□ 1.11
CCDC90B-217ENST00000530253 PABPN1Q86U42 306 aaKnown RBP eCLIP21.93■■□□□ 1.1
CCDC90B-217ENST00000530253 PRKAR2AP13861 404 aaKnown RBP21.87■■□□□ 1.09
CCDC90B-217ENST00000530253 PRR29P0C7W0 189 aa21.76■■□□□ 1.07
CCDC90B-217ENST00000530253 CHADLQ6NUI6 762 aa21.55■■□□□ 1.04
CCDC90B-217ENST00000530253 C19orf67A6NJJ6 358 aa21.52■■□□□ 1.04
CCDC90B-217ENST00000530253 SPDYE4A6NLX3 237 aa21.52■■□□□ 1.04
CCDC90B-217ENST00000530253 STAG3Q9UJ98 1225 aa21.5■■□□□ 1.03
CCDC90B-217ENST00000530253 EVX2Q03828 476 aa21.49■■□□□ 1.03
CCDC90B-217ENST00000530253 FARP1Q9Y4F1 1045 aaPredicted RBP21.33■■□□□ 1.01
CCDC90B-217ENST00000530253 CD44P16070 742 aaKnown RBP21.2■□□□□ 0.98
CCDC90B-217ENST00000530253 GABBR2O75899 941 aa21.16■□□□□ 0.98
CCDC90B-217ENST00000530253 CREBZFQ9NS37 354 aa21.15■□□□□ 0.98
CCDC90B-217ENST00000530253 CLCN6P51797 869 aa21.1■□□□□ 0.97
CCDC90B-217ENST00000530253 PROM2Q8N271 834 aa20.98■□□□□ 0.95
CCDC90B-217ENST00000530253 NISCHQ9Y2I1 1504 aa20.96■□□□□ 0.95
CCDC90B-217ENST00000530253 NPM1P06748 294 aaKnown RBP eCLIP20.94■□□□□ 0.94
CCDC90B-217ENST00000530253 PAK3O75914 559 aaPredicted RBP20.9■□□□□ 0.94
CCDC90B-217ENST00000530253 ZNF579Q8NAF0 562 aaKnown RBP20.9■□□□□ 0.94
CCDC90B-217ENST00000530253 ZRANB1Q9UGI0 708 aa20.9■□□□□ 0.94
CCDC90B-217ENST00000530253 MNX1P50219 401 aaPredicted RBP20.76■□□□□ 0.91
CCDC90B-217ENST00000530253 DCBLD2Q96PD2 775 aa20.71■□□□□ 0.91
CCDC90B-217ENST00000530253 PLEKHG5O94827 1062 aa20.7■□□□□ 0.9
CCDC90B-217ENST00000530253 LHX8Q68G74 356 aa20.62■□□□□ 0.89
CCDC90B-217ENST00000530253 POTEIP0CG38 1075 aa20.61■□□□□ 0.89
CCDC90B-217ENST00000530253 PHF12Q96QT6 1004 aa20.55■□□□□ 0.88
CCDC90B-217ENST00000530253 GALR2O43603 387 aaPredicted RBP20.54■□□□□ 0.88
CCDC90B-217ENST00000530253 MIER1Q8N108 512 aa20.53■□□□□ 0.88
CCDC90B-217ENST00000530253 FKBP8Q14318 412 aa20.47■□□□□ 0.87
CCDC90B-217ENST00000530253 PLCD3Q8N3E9 789 aa20.42■□□□□ 0.86
CCDC90B-217ENST00000530253 TSPYL2Q9H2G4 693 aaPredicted RBP20.41■□□□□ 0.86
CCDC90B-217ENST00000530253 ZBTB47Q9UFB7 747 aaPredicted RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms