RNA–Protein interactions for RNA: ENST00000528873.2

GEN1-204, Transcript of GEN1, Holliday junction 5' flap endonuclease, humanhuman

TSL 5

Gene GEN1, Length 871 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GEN1-204ENST00000528873 AEBP2Q6ZN18 517 aaPredicted RBP25.98■■□□□ 1.75
GEN1-204ENST00000528873 CHIC1Q5VXU3 224 aa25.09■■□□□ 1.61
GEN1-204ENST00000528873 SENP3Q9H4L4 574 aaPredicted RBP22.11■■□□□ 1.13
GEN1-204ENST00000528873 PHF23Q9BUL5 403 aaPredicted RBP22.04■■□□□ 1.12
GEN1-204ENST00000528873 FOXD1Q16676 465 aa20.56■□□□□ 0.88
GEN1-204ENST00000528873 PLPPR3Q6T4P5 718 aa20.26■□□□□ 0.83
GEN1-204ENST00000528873 PPP6R1Q9UPN7 881 aa19.55■□□□□ 0.72
GEN1-204ENST00000528873 ADRA2BP18089 450 aa19.54■□□□□ 0.72
GEN1-204ENST00000528873 PIAS4Q8N2W9 510 aaPredicted RBP19.32■□□□□ 0.68
GEN1-204ENST00000528873 MSH5O43196 834 aa19.08■□□□□ 0.64
GEN1-204ENST00000528873 SCAF1Q9H7N4 1312 aaKnown RBP17.9■□□□□ 0.46
GEN1-204ENST00000528873 POTEDQ86YR6 584 aa17.89■□□□□ 0.45
GEN1-204ENST00000528873 PPP4R3CPQ6ZMV5 832 aa17.83■□□□□ 0.44
GEN1-204ENST00000528873 MAPK8IP2Q13387 824 aaPredicted RBP17.82■□□□□ 0.44
GEN1-204ENST00000528873 DMRT2Q9Y5R5 561 aa17.59■□□□□ 0.41
GEN1-204ENST00000528873 CNKSR2Q8WXI2 1034 aa17.39■□□□□ 0.37
GEN1-204ENST00000528873 NCBP3Q53F19 620 aaKnown RBP17.29■□□□□ 0.36
GEN1-204ENST00000528873 HOXD11P31277 338 aaPredicted RBP17.11■□□□□ 0.33
GEN1-204ENST00000528873 RNF216Q9NWF9 866 aaPredicted RBP17.11■□□□□ 0.33
GEN1-204ENST00000528873 KCNA4P22459 653 aa17.06■□□□□ 0.32
GEN1-204ENST00000528873 NPM3O75607 178 aaKnown RBP17■□□□□ 0.31
GEN1-204ENST00000528873 DCAF8L1A6NGE4 600 aa16.92■□□□□ 0.3
GEN1-204ENST00000528873 DNAJC5BQ9UF47 199 aa16.5■□□□□ 0.23
GEN1-204ENST00000528873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.36■□□□□ 0.21
GEN1-204ENST00000528873 RNF39Q9H2S5 420 aa16.3■□□□□ 0.2
GEN1-204ENST00000528873 SLC4A1APQ9BWU0 796 aaKnown RBP16.22■□□□□ 0.19
GEN1-204ENST00000528873 CACNB1Q02641 598 aaPredicted RBP16.15■□□□□ 0.18
GEN1-204ENST00000528873 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
GEN1-204ENST00000528873 C1QBPQ07021 282 aaKnown RBP16.11■□□□□ 0.17
GEN1-204ENST00000528873 U3KPZ7 1027 aaPredicted RBP16.02■□□□□ 0.16
GEN1-204ENST00000528873 FOXD4L1Q9NU39 408 aa15.79■□□□□ 0.12
GEN1-204ENST00000528873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.74■□□□□ 0.11
GEN1-204ENST00000528873 HNRNPUL2Q1KMD3 747 aaKnown RBP15.74■□□□□ 0.11
GEN1-204ENST00000528873 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.11
GEN1-204ENST00000528873 SPINK5Q9NQ38 1064 aaPredicted RBP15.67■□□□□ 0.1
GEN1-204ENST00000528873 ZBTB22O15209 634 aa15.66■□□□□ 0.1
GEN1-204ENST00000528873 CAPN15O75808 1086 aa15.66■□□□□ 0.1
GEN1-204ENST00000528873 SAMD1Q6SPF0 538 aaPredicted RBP15.66■□□□□ 0.1
GEN1-204ENST00000528873 APLP2Q06481 763 aa15.65■□□□□ 0.1
GEN1-204ENST00000528873 TRHP20396 242 aaPredicted RBP15.51■□□□□ 0.07
GEN1-204ENST00000528873 ZNF219Q9P2Y4 722 aaPredicted RBP15.46■□□□□ 0.07
GEN1-204ENST00000528873 DSG3P32926 999 aa15.42■□□□□ 0.06
GEN1-204ENST00000528873 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
GEN1-204ENST00000528873 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
GEN1-204ENST00000528873 ATF5Q9Y2D1 282 aaPredicted RBP15.32■□□□□ 0.04
GEN1-204ENST00000528873 ABCB7O75027 752 aa15.31■□□□□ 0.04
GEN1-204ENST00000528873 ATXN8OSP0DMR3 200 aa15.26■□□□□ 0.03
GEN1-204ENST00000528873 POLA2Q14181 598 aa15.19■□□□□ 0.02
GEN1-204ENST00000528873 ZBTB12Q9Y330 459 aaPredicted RBP14.88□□□□□ -0.03
GEN1-204ENST00000528873 FBLN2P98095 1184 aa14.73□□□□□ -0.05
GEN1-204ENST00000528873 RBM42Q9BTD8 480 aaKnown RBP14.71□□□□□ -0.05
GEN1-204ENST00000528873 OSCARQ8IYS5 282 aa14.64□□□□□ -0.07
GEN1-204ENST00000528873 MKRN4PQ13434 485 aaPredicted RBP14.63□□□□□ -0.07
GEN1-204ENST00000528873 AKT1S1Q96B36 256 aa14.47□□□□□ -0.09
GEN1-204ENST00000528873 SPDYE2BA6NHP3 402 aa14.46□□□□□ -0.09
GEN1-204ENST00000528873 SPDYE6P0CI01 402 aa14.46□□□□□ -0.09
GEN1-204ENST00000528873 SPDYE2Q495Y8 402 aa14.46□□□□□ -0.09
GEN1-204ENST00000528873 ZNF692Q9BU19 519 aaPredicted RBP14.39□□□□□ -0.11
GEN1-204ENST00000528873 REM2Q8IYK8 340 aaPredicted RBP14.34□□□□□ -0.11
GEN1-204ENST00000528873 SSUH2Q9Y2M2 353 aa14.29□□□□□ -0.12
GEN1-204ENST00000528873 CHRDL2Q6WN34 429 aa14.22□□□□□ -0.13
GEN1-204ENST00000528873 SPDYE4A6NLX3 237 aa14.2□□□□□ -0.14
GEN1-204ENST00000528873 PABPN1Q86U42 306 aaKnown RBP eCLIP14.18□□□□□ -0.14
GEN1-204ENST00000528873 PITPNM1O00562 1244 aa14.16□□□□□ -0.14
GEN1-204ENST00000528873 SPDYE1Q8NFV5 336 aaPredicted RBP14.12□□□□□ -0.15
GEN1-204ENST00000528873 POTEHQ6S545 545 aa14.11□□□□□ -0.15
GEN1-204ENST00000528873 CLEC11AQ9Y240 323 aa14.1□□□□□ -0.15
GEN1-204ENST00000528873 PIP4P2Q8N4L2 257 aa13.97□□□□□ -0.17
GEN1-204ENST00000528873 FXR2P51116 673 aaKnown RBP eCLIP13.96□□□□□ -0.17
GEN1-204ENST00000528873 PRR29P0C7W0 189 aa13.93□□□□□ -0.18
GEN1-204ENST00000528873 FKBP8Q14318 412 aa13.93□□□□□ -0.18
GEN1-204ENST00000528873 STAG3Q9UJ98 1225 aa13.89□□□□□ -0.19
GEN1-204ENST00000528873 PROM2Q8N271 834 aa13.85□□□□□ -0.19
GEN1-204ENST00000528873 PRKAR2AP13861 404 aaKnown RBP13.82□□□□□ -0.2
GEN1-204ENST00000528873 CHADLQ6NUI6 762 aa13.76□□□□□ -0.21
GEN1-204ENST00000528873 HAX1O00165 279 aa13.65□□□□□ -0.22
GEN1-204ENST00000528873 CREBZFQ9NS37 354 aa13.65□□□□□ -0.22
GEN1-204ENST00000528873 FARP1Q9Y4F1 1045 aaPredicted RBP13.61□□□□□ -0.23
GEN1-204ENST00000528873 MIER1Q8N108 512 aa13.53□□□□□ -0.24
GEN1-204ENST00000528873 FBXO3Q9UK99 471 aa13.52□□□□□ -0.25
GEN1-204ENST00000528873 C19orf67A6NJJ6 358 aa13.49□□□□□ -0.25
GEN1-204ENST00000528873 PLEKHG5O94827 1062 aa13.48□□□□□ -0.25
GEN1-204ENST00000528873 EVX2Q03828 476 aa13.48□□□□□ -0.25
GEN1-204ENST00000528873 PLCD3Q8N3E9 789 aa13.47□□□□□ -0.25
GEN1-204ENST00000528873 NPM1P06748 294 aaKnown RBP eCLIP13.45□□□□□ -0.26
GEN1-204ENST00000528873 MNX1P50219 401 aaPredicted RBP13.43□□□□□ -0.26
GEN1-204ENST00000528873 SP7Q8TDD2 431 aaPredicted RBP13.43□□□□□ -0.26
GEN1-204ENST00000528873 CD44P16070 742 aaKnown RBP13.41□□□□□ -0.26
GEN1-204ENST00000528873 VASPP50552 380 aaPredicted RBP13.32□□□□□ -0.28
GEN1-204ENST00000528873 ZBTB47Q9UFB7 747 aaPredicted RBP13.32□□□□□ -0.28
GEN1-204ENST00000528873 ZRANB1Q9UGI0 708 aa13.31□□□□□ -0.28
GEN1-204ENST00000528873 PAK3O75914 559 aaPredicted RBP13.3□□□□□ -0.28
GEN1-204ENST00000528873 KLHL34Q8N239 644 aa13.23□□□□□ -0.29
GEN1-204ENST00000528873 TSPYL2Q9H2G4 693 aaPredicted RBP13.22□□□□□ -0.29
GEN1-204ENST00000528873 GABBR2O75899 941 aa13.21□□□□□ -0.29
GEN1-204ENST00000528873 ZNF579Q8NAF0 562 aaKnown RBP13.2□□□□□ -0.3
GEN1-204ENST00000528873 RASEFQ8IZ41 740 aa13.18□□□□□ -0.3
GEN1-204ENST00000528873 NUBP1P53384 320 aa13.16□□□□□ -0.3
GEN1-204ENST00000528873 CLCN6P51797 869 aa13.15□□□□□ -0.3
GEN1-204ENST00000528873 PHF12Q96QT6 1004 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 320 ms