RNA–Protein interactions for RNA: ENST00000528288.5

C11orf54-207, Transcript of chromosome 11 open reading frame 54, humanhuman

TSL 1 (best) BASIC

Gene C11orf54, Length 4,094 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf54-207ENST00000528288 NISCHQ9Y2I1 1504 aa15.19■□□□□ 0.02
C11orf54-207ENST00000528288 SHROOM4Q9ULL8 1493 aa13.35□□□□□ -0.27
C11orf54-207ENST00000528288 SUPT5HO00267 1087 aaKnown RBP13.1□□□□□ -0.31
C11orf54-207ENST00000528288 DCAF8L2P0C7V8 631 aa13.03□□□□□ -0.32
C11orf54-207ENST00000528288 ZCCHC6Q5VYS8 1495 aaKnown RBP12.81□□□□□ -0.36
C11orf54-207ENST00000528288 CCDC180Q9P1Z9 1646 aa12.71□□□□□ -0.37
C11orf54-207ENST00000528288 CHIC1Q5VXU3 224 aa12.6□□□□□ -0.39
C11orf54-207ENST00000528288 MYO15BQ96JP2 1530 aa12.57□□□□□ -0.4
C11orf54-207ENST00000528288 LOC105371045A0A1W2PR82 267 aa12.38□□□□□ -0.43
C11orf54-207ENST00000528288 PCGF6Q9BYE7 350 aa12.37□□□□□ -0.43
C11orf54-207ENST00000528288 DCAF1Q9Y4B6 1507 aa12.27□□□□□ -0.44
C11orf54-207ENST00000528288 HRCP23327 699 aa12.24□□□□□ -0.45
C11orf54-207ENST00000528288 EHMT2Q96KQ7 1210 aa12.22□□□□□ -0.45
C11orf54-207ENST00000528288 SCRIBQ14160 1630 aa12.21□□□□□ -0.45
C11orf54-207ENST00000528288 PPARGC1BQ86YN6 1023 aaKnown RBP12.21□□□□□ -0.46
C11orf54-207ENST00000528288 FAM9AQ8IZU1 332 aaPredicted RBP12.17□□□□□ -0.46
C11orf54-207ENST00000528288 ABCC9O60706 1549 aa12.12□□□□□ -0.47
C11orf54-207ENST00000528288 RSF1Q96T23 1441 aaPredicted RBP12.11□□□□□ -0.47
C11orf54-207ENST00000528288 TRIM41Q8WV44 630 aa12.08□□□□□ -0.48
C11orf54-207ENST00000528288 RB1CC1Q8TDY2 1594 aa12□□□□□ -0.49
C11orf54-207ENST00000528288 CECR2Q9BXF3 1484 aa11.99□□□□□ -0.49
C11orf54-207ENST00000528288 TRIM26Q12899 539 aaPredicted RBP11.96□□□□□ -0.5
C11orf54-207ENST00000528288 MROH2BQ7Z745 1585 aa11.9□□□□□ -0.5
C11orf54-207ENST00000528288 WIZO95785 1651 aa11.83□□□□□ -0.51
C11orf54-207ENST00000528288 NACADO15069 1562 aa11.82□□□□□ -0.52
C11orf54-207ENST00000528288 TTBK1Q5TCY1 1321 aaPredicted RBP11.79□□□□□ -0.52
C11orf54-207ENST00000528288 PABPN1Q86U42 306 aaKnown RBP eCLIP11.73□□□□□ -0.53
C11orf54-207ENST00000528288 ABCC8Q09428 1581 aa11.65□□□□□ -0.54
C11orf54-207ENST00000528288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.65□□□□□ -0.54
C11orf54-207ENST00000528288 BAZ1AQ9NRL2 1556 aaPredicted RBP11.62□□□□□ -0.55
C11orf54-207ENST00000528288 CCDC88BA6NC98 1476 aa11.61□□□□□ -0.55
C11orf54-207ENST00000528288 ZEB1P37275 1124 aaPredicted RBP11.6□□□□□ -0.55
C11orf54-207ENST00000528288 SOGA1O94964 1423 aa11.56□□□□□ -0.56
C11orf54-207ENST00000528288 CCER1Q8TC90 406 aaPredicted RBP11.56□□□□□ -0.56
C11orf54-207ENST00000528288 UBTFP17480 764 aaKnown RBP11.56□□□□□ -0.56
C11orf54-207ENST00000528288 SMARCA4P51532 1647 aa11.55□□□□□ -0.56
C11orf54-207ENST00000528288 RUSC2Q8N2Y8 1516 aa11.53□□□□□ -0.56
C11orf54-207ENST00000528288 EIF4G1Q04637 1599 aaKnown RBP11.53□□□□□ -0.56
C11orf54-207ENST00000528288 TOP2AP11388 1531 aaKnown RBP11.53□□□□□ -0.56
C11orf54-207ENST00000528288 RANGAP1P46060 587 aaPredicted RBP11.52□□□□□ -0.56
C11orf54-207ENST00000528288 SMARCA2P51531 1590 aa11.51□□□□□ -0.57
C11orf54-207ENST00000528288 UNC13AQ9UPW8 1703 aa11.51□□□□□ -0.57
C11orf54-207ENST00000528288 CSRNP3Q8WYN3 585 aa11.48□□□□□ -0.57
C11orf54-207ENST00000528288 CEP162Q5TB80 1403 aa11.46□□□□□ -0.57
C11orf54-207ENST00000528288 BICRAQ9NZM4 1560 aa11.4□□□□□ -0.58
C11orf54-207ENST00000528288 SCAF1Q9H7N4 1312 aaKnown RBP11.38□□□□□ -0.59
C11orf54-207ENST00000528288 HNRNPUL2Q1KMD3 747 aaKnown RBP11.38□□□□□ -0.59
C11orf54-207ENST00000528288 TNIKQ9UKE5 1360 aa11.38□□□□□ -0.59
C11orf54-207ENST00000528288 WRNQ14191 1432 aaPredicted RBP eCLIP11.37□□□□□ -0.59
C11orf54-207ENST00000528288 DIEXFQ68CQ4 756 aaKnown RBP11.31□□□□□ -0.6
C11orf54-207ENST00000528288 SYNJ1O43426 1573 aa11.31□□□□□ -0.6
C11orf54-207ENST00000528288 GOLGA3Q08378 1498 aa11.31□□□□□ -0.6
C11orf54-207ENST00000528288 ATAD2BQ9ULI0 1458 aa11.29□□□□□ -0.6
C11orf54-207ENST00000528288 BAZ1BQ9UIG0 1483 aaKnown RBP11.28□□□□□ -0.6
C11orf54-207ENST00000528288 EEA1Q15075 1411 aa11.27□□□□□ -0.61
C11orf54-207ENST00000528288 NEUROD1Q13562 356 aa11.26□□□□□ -0.61
C11orf54-207ENST00000528288 CLIP1P30622 1438 aa11.25□□□□□ -0.61
C11orf54-207ENST00000528288 APLP2Q06481 763 aa11.24□□□□□ -0.61
C11orf54-207ENST00000528288 RAPGEF2Q9Y4G8 1499 aa11.24□□□□□ -0.61
C11orf54-207ENST00000528288 YTHDC1Q96MU7 727 aaKnown RBP11.22□□□□□ -0.61
C11orf54-207ENST00000528288 CEP164Q9UPV0 1460 aa11.22□□□□□ -0.61
C11orf54-207ENST00000528288 PEG3Q9GZU2 1588 aa11.2□□□□□ -0.62
C11orf54-207ENST00000528288 ACIN1Q9UKV3 1341 aaKnown RBP11.19□□□□□ -0.62
C11orf54-207ENST00000528288 ZNF316A6NFI3 1004 aaPredicted RBP11.17□□□□□ -0.62
C11orf54-207ENST00000528288 GTF3C3Q9Y5Q9 886 aa11.15□□□□□ -0.62
C11orf54-207ENST00000528288 VPS8Q8N3P4 1428 aa11.14□□□□□ -0.63
C11orf54-207ENST00000528288 KANK4Q5T7N3 995 aaPredicted RBP11.13□□□□□ -0.63
C11orf54-207ENST00000528288 KIF21BO75037 1637 aa11.13□□□□□ -0.63
C11orf54-207ENST00000528288 ITGAEP38570 1179 aa11.13□□□□□ -0.63
C11orf54-207ENST00000528288 MIER1Q8N108 512 aa11.11□□□□□ -0.63
C11orf54-207ENST00000528288 CENPBP07199 599 aaPredicted RBP11.09□□□□□ -0.63
C11orf54-207ENST00000528288 TOP2BQ02880 1626 aa11.07□□□□□ -0.64
C11orf54-207ENST00000528288 CUX1P39880 1505 aa11.05□□□□□ -0.64
C11orf54-207ENST00000528288 ARAP1Q96P48 1450 aa11.03□□□□□ -0.64
C11orf54-207ENST00000528288 P3H3Q8IVL6 736 aa11.03□□□□□ -0.64
C11orf54-207ENST00000528288 ATP1B4Q9UN42 357 aaPredicted RBP11.02□□□□□ -0.64
C11orf54-207ENST00000528288 PRXQ9BXM0 1461 aa11.01□□□□□ -0.65
C11orf54-207ENST00000528288 NCAPD3P42695 1498 aa11□□□□□ -0.65
C11orf54-207ENST00000528288 KIF27Q86VH2 1401 aa11□□□□□ -0.65
C11orf54-207ENST00000528288 BIVM-ERCC5R4GMW8 1640 aa10.98□□□□□ -0.65
C11orf54-207ENST00000528288 DHX57Q6P158 1386 aaKnown RBP10.96□□□□□ -0.65
C11orf54-207ENST00000528288 CUX2O14529 1486 aa10.95□□□□□ -0.66
C11orf54-207ENST00000528288 CFTRP13569 1480 aa10.95□□□□□ -0.66
C11orf54-207ENST00000528288 ARHGAP35Q9NRY4 1499 aa10.93□□□□□ -0.66
C11orf54-207ENST00000528288 HMGXB3Q12766 1538 aa10.93□□□□□ -0.66
C11orf54-207ENST00000528288 ERICH3Q5RHP9 1530 aa10.93□□□□□ -0.66
C11orf54-207ENST00000528288 IGF1RP08069 1367 aa10.92□□□□□ -0.66
C11orf54-207ENST00000528288 FAM50AQ14320 339 aaKnown RBP10.91□□□□□ -0.66
C11orf54-207ENST00000528288 PELP1Q8IZL8 1130 aaKnown RBP10.91□□□□□ -0.66
C11orf54-207ENST00000528288 CCNB3Q8WWL7 1395 aa10.89□□□□□ -0.67
C11orf54-207ENST00000528288 CARMIL1Q5VZK9 1371 aa10.89□□□□□ -0.67
C11orf54-207ENST00000528288 CADPSQ9ULU8 1353 aa10.87□□□□□ -0.67
C11orf54-207ENST00000528288 FGD5Q6ZNL6 1462 aa10.87□□□□□ -0.67
C11orf54-207ENST00000528288 SIN3AQ96ST3 1273 aa10.86□□□□□ -0.67
C11orf54-207ENST00000528288 RRBP1Q9P2E9 1410 aaKnown RBP10.85□□□□□ -0.67
C11orf54-207ENST00000528288 HIRIP3Q9BW71 556 aaPredicted RBP10.84□□□□□ -0.67
C11orf54-207ENST00000528288 RAD54L2Q9Y4B4 1467 aa10.84□□□□□ -0.67
C11orf54-207ENST00000528288 RAB3GAP2Q9H2M9 1393 aa10.84□□□□□ -0.67
C11orf54-207ENST00000528288 KCNH8Q96L42 1107 aa10.84□□□□□ -0.67
C11orf54-207ENST00000528288 PHLDB1Q86UU1 1377 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms