RNA–Protein interactions for RNA: ENST00000528235.5

CHKA-204, Transcript of choline kinase alpha, humanhuman

TSL 5

Gene CHKA, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKA-204ENST00000528235 AEBP2Q6ZN18 517 aaPredicted RBP20.86■□□□□ 0.93
CHKA-204ENST00000528235 CHIC1Q5VXU3 224 aa19.94■□□□□ 0.78
CHKA-204ENST00000528235 SENP3Q9H4L4 574 aaPredicted RBP17.9■□□□□ 0.46
CHKA-204ENST00000528235 PHF23Q9BUL5 403 aaPredicted RBP17.63■□□□□ 0.41
CHKA-204ENST00000528235 FOXD1Q16676 465 aa16.6■□□□□ 0.25
CHKA-204ENST00000528235 PLPPR3Q6T4P5 718 aa16.01■□□□□ 0.15
CHKA-204ENST00000528235 MSH5O43196 834 aa15.61■□□□□ 0.09
CHKA-204ENST00000528235 PIAS4Q8N2W9 510 aaPredicted RBP15.58■□□□□ 0.08
CHKA-204ENST00000528235 PPP6R1Q9UPN7 881 aa15.54■□□□□ 0.08
CHKA-204ENST00000528235 ADRA2BP18089 450 aa15.51■□□□□ 0.07
CHKA-204ENST00000528235 POTEDQ86YR6 584 aa15.04■□□□□ -0
CHKA-204ENST00000528235 SCAF1Q9H7N4 1312 aaKnown RBP14.33□□□□□ -0.12
CHKA-204ENST00000528235 MAPK8IP2Q13387 824 aaPredicted RBP14.22□□□□□ -0.13
CHKA-204ENST00000528235 DMRT2Q9Y5R5 561 aa14.17□□□□□ -0.14
CHKA-204ENST00000528235 PPP4R3CPQ6ZMV5 832 aa14□□□□□ -0.17
CHKA-204ENST00000528235 NISCHQ9Y2I1 1504 aa13.88□□□□□ -0.19
CHKA-204ENST00000528235 CNKSR2Q8WXI2 1034 aa13.76□□□□□ -0.21
CHKA-204ENST00000528235 HOXD11P31277 338 aaPredicted RBP13.67□□□□□ -0.22
CHKA-204ENST00000528235 DCAF8L1A6NGE4 600 aa13.62□□□□□ -0.23
CHKA-204ENST00000528235 RNF216Q9NWF9 866 aaPredicted RBP13.62□□□□□ -0.23
CHKA-204ENST00000528235 NCBP3Q53F19 620 aaKnown RBP13.57□□□□□ -0.24
CHKA-204ENST00000528235 CACNB1Q02641 598 aaPredicted RBP13.33□□□□□ -0.28
CHKA-204ENST00000528235 NPM3O75607 178 aaKnown RBP13.28□□□□□ -0.28
CHKA-204ENST00000528235 RNF39Q9H2S5 420 aa13.27□□□□□ -0.29
CHKA-204ENST00000528235 DNAJC5BQ9UF47 199 aa13.25□□□□□ -0.29
CHKA-204ENST00000528235 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
CHKA-204ENST00000528235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.08□□□□□ -0.321e-6■■□□□ 13.4
CHKA-204ENST00000528235 KCNA4P22459 653 aa13.05□□□□□ -0.32
CHKA-204ENST00000528235 ABCC9O60706 1549 aa13□□□□□ -0.33
CHKA-204ENST00000528235 U3KPZ7 1027 aaPredicted RBP12.74□□□□□ -0.37
CHKA-204ENST00000528235 CCDC180Q9P1Z9 1646 aa12.7□□□□□ -0.38
CHKA-204ENST00000528235 SLC4A2P04920 1241 aa12.63□□□□□ -0.39
CHKA-204ENST00000528235 CAPN15O75808 1086 aa12.57□□□□□ -0.4
CHKA-204ENST00000528235 APLP2Q06481 763 aa12.54□□□□□ -0.4
CHKA-204ENST00000528235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.53□□□□□ -0.4
CHKA-204ENST00000528235 HNRNPUL2Q1KMD3 747 aaKnown RBP12.53□□□□□ -0.4
CHKA-204ENST00000528235 SPINK5Q9NQ38 1064 aaPredicted RBP12.52□□□□□ -0.41
CHKA-204ENST00000528235 DSG3P32926 999 aa12.44□□□□□ -0.42
CHKA-204ENST00000528235 SAMD1Q6SPF0 538 aaPredicted RBP12.43□□□□□ -0.42
CHKA-204ENST00000528235 SLC4A1APQ9BWU0 796 aaKnown RBP12.39□□□□□ -0.43
CHKA-204ENST00000528235 ZNF219Q9P2Y4 722 aaPredicted RBP12.39□□□□□ -0.43
CHKA-204ENST00000528235 TRHP20396 242 aaPredicted RBP12.37□□□□□ -0.43
CHKA-204ENST00000528235 MYCNP04198 464 aaPredicted RBP12.33□□□□□ -0.44
CHKA-204ENST00000528235 RB1CC1Q8TDY2 1594 aa12.25□□□□□ -0.45
CHKA-204ENST00000528235 ABCB7O75027 752 aa12.23□□□□□ -0.45
CHKA-204ENST00000528235 FOXD4L1Q9NU39 408 aa12.22□□□□□ -0.45
CHKA-204ENST00000528235 UNC13AQ9UPW8 1703 aa12.08□□□□□ -0.48
CHKA-204ENST00000528235 POLA2Q14181 598 aa12.05□□□□□ -0.48
CHKA-204ENST00000528235 NACADO15069 1562 aa12.05□□□□□ -0.48
CHKA-204ENST00000528235 PABPN1Q86U42 306 aaKnown RBP eCLIP12.02□□□□□ -0.49
CHKA-204ENST00000528235 ZBTB22O15209 634 aa11.96□□□□□ -0.49
CHKA-204ENST00000528235 DCAF8L2P0C7V8 631 aa11.96□□□□□ -0.49
CHKA-204ENST00000528235 RBM42Q9BTD8 480 aaKnown RBP11.95□□□□□ -0.5
CHKA-204ENST00000528235 ATF5Q9Y2D1 282 aaPredicted RBP11.94□□□□□ -0.5
CHKA-204ENST00000528235 ZBTB12Q9Y330 459 aaPredicted RBP11.89□□□□□ -0.51
CHKA-204ENST00000528235 ATXN8OSP0DMR3 200 aa11.87□□□□□ -0.51
CHKA-204ENST00000528235 BICRAQ9NZM4 1560 aa11.85□□□□□ -0.51
CHKA-204ENST00000528235 POTEHQ6S545 545 aa11.84□□□□□ -0.51
CHKA-204ENST00000528235 CC2D2AQ9P2K1 1620 aa11.75□□□□□ -0.53
CHKA-204ENST00000528235 DNAJC5Q9H3Z4 198 aa11.74□□□□□ -0.53
CHKA-204ENST00000528235 CECR2Q9BXF3 1484 aa11.74□□□□□ -0.53
CHKA-204ENST00000528235 MYO15BQ96JP2 1530 aa11.7□□□□□ -0.54
CHKA-204ENST00000528235 AKT1S1Q96B36 256 aa11.66□□□□□ -0.54
CHKA-204ENST00000528235 SHROOM4Q9ULL8 1493 aa11.64□□□□□ -0.55
CHKA-204ENST00000528235 OSCARQ8IYS5 282 aa11.63□□□□□ -0.55
CHKA-204ENST00000528235 EIF4G1Q04637 1599 aaKnown RBP11.62□□□□□ -0.55
CHKA-204ENST00000528235 CHRDL2Q6WN34 429 aa11.61□□□□□ -0.55
CHKA-204ENST00000528235 FBLN2P98095 1184 aa11.6□□□□□ -0.55
CHKA-204ENST00000528235 SCRIBQ14160 1630 aa11.53□□□□□ -0.56
CHKA-204ENST00000528235 REM2Q8IYK8 340 aaPredicted RBP11.51□□□□□ -0.57
CHKA-204ENST00000528235 CSRNP3Q8WYN3 585 aa11.5□□□□□ -0.57
CHKA-204ENST00000528235 SPDYE2BA6NHP3 402 aa11.48□□□□□ -0.57
CHKA-204ENST00000528235 SPDYE6P0CI01 402 aa11.48□□□□□ -0.57
CHKA-204ENST00000528235 SPDYE2Q495Y8 402 aa11.48□□□□□ -0.57
CHKA-204ENST00000528235 DCAF1Q9Y4B6 1507 aa11.43□□□□□ -0.58
CHKA-204ENST00000528235 EHMT2Q96KQ7 1210 aa11.41□□□□□ -0.58
CHKA-204ENST00000528235 ZCCHC6Q5VYS8 1495 aaKnown RBP11.4□□□□□ -0.58
CHKA-204ENST00000528235 MKRN4PQ13434 485 aaPredicted RBP11.4□□□□□ -0.58
CHKA-204ENST00000528235 PITPNM1O00562 1244 aa11.37□□□□□ -0.59
CHKA-204ENST00000528235 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
CHKA-204ENST00000528235 CUX2O14529 1486 aa11.35□□□□□ -0.59
CHKA-204ENST00000528235 PIP4P2Q8N4L2 257 aa11.33□□□□□ -0.6
CHKA-204ENST00000528235 SSUH2Q9Y2M2 353 aa11.29□□□□□ -0.6
CHKA-204ENST00000528235 ERCC6Q03468 1493 aa11.28□□□□□ -0.6
CHKA-204ENST00000528235 FXR2P51116 673 aaKnown RBP eCLIP11.28□□□□□ -0.6
CHKA-204ENST00000528235 SPDYE1Q8NFV5 336 aaPredicted RBP11.27□□□□□ -0.61
CHKA-204ENST00000528235 CLEC11AQ9Y240 323 aa11.24□□□□□ -0.61
CHKA-204ENST00000528235 HAX1O00165 279 aa11.14□□□□□ -0.63
CHKA-204ENST00000528235 TRIM41Q8WV44 630 aa11.14□□□□□ -0.63
CHKA-204ENST00000528235 SP7Q8TDD2 431 aaPredicted RBP11.13□□□□□ -0.63
CHKA-204ENST00000528235 PRKAR2AP13861 404 aaKnown RBP11.11□□□□□ -0.63
CHKA-204ENST00000528235 PRR29P0C7W0 189 aa11.08□□□□□ -0.64
CHKA-204ENST00000528235 NCAPD3P42695 1498 aa11.07□□□□□ -0.64
CHKA-204ENST00000528235 NESP48681 1621 aa11.05□□□□□ -0.64
CHKA-204ENST00000528235 THOC2Q8NI27 1593 aaKnown RBP11.03□□□□□ -0.64
CHKA-204ENST00000528235 KIF21AQ7Z4S6 1674 aa11□□□□□ -0.65
CHKA-204ENST00000528235 ATAD2BQ9ULI0 1458 aa11□□□□□ -0.65
CHKA-204ENST00000528235 HMGXB3Q12766 1538 aa10.99□□□□□ -0.65
CHKA-204ENST00000528235 SMARCA2P51531 1590 aa10.99□□□□□ -0.65
CHKA-204ENST00000528235 SPDYE4A6NLX3 237 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms