RNA–Protein interactions for RNA: ENST00000526821.5

ATPAF1-208, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 3

Gene ATPAF1, Length 1,222 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-208ENST00000526821 AEBP2Q6ZN18 517 aaPredicted RBP25.07■■□□□ 1.6
ATPAF1-208ENST00000526821 CHIC1Q5VXU3 224 aa24.35■■□□□ 1.49
ATPAF1-208ENST00000526821 SENP3Q9H4L4 574 aaPredicted RBP21.51■■□□□ 1.03
ATPAF1-208ENST00000526821 PHF23Q9BUL5 403 aaPredicted RBP21.27■■□□□ 1
ATPAF1-208ENST00000526821 FOXD1Q16676 465 aa19.88■□□□□ 0.77
ATPAF1-208ENST00000526821 PLPPR3Q6T4P5 718 aa19.74■□□□□ 0.75
ATPAF1-208ENST00000526821 ADRA2BP18089 450 aa18.87■□□□□ 0.61
ATPAF1-208ENST00000526821 PPP6R1Q9UPN7 881 aa18.84■□□□□ 0.61
ATPAF1-208ENST00000526821 PIAS4Q8N2W9 510 aaPredicted RBP18.77■□□□□ 0.6
ATPAF1-208ENST00000526821 MSH5O43196 834 aa18.59■□□□□ 0.57
ATPAF1-208ENST00000526821 SCAF1Q9H7N4 1312 aaKnown RBP17.48■□□□□ 0.39
ATPAF1-208ENST00000526821 PPP4R3CPQ6ZMV5 832 aa17.3■□□□□ 0.36
ATPAF1-208ENST00000526821 POTEDQ86YR6 584 aa17.27■□□□□ 0.36
ATPAF1-208ENST00000526821 MAPK8IP2Q13387 824 aaPredicted RBP17.16■□□□□ 0.34
ATPAF1-208ENST00000526821 DMRT2Q9Y5R5 561 aa17.07■□□□□ 0.32
ATPAF1-208ENST00000526821 CNKSR2Q8WXI2 1034 aa16.92■□□□□ 0.3
ATPAF1-208ENST00000526821 NCBP3Q53F19 620 aaKnown RBP16.91■□□□□ 0.3
ATPAF1-208ENST00000526821 RNF216Q9NWF9 866 aaPredicted RBP16.65■□□□□ 0.26
ATPAF1-208ENST00000526821 HOXD11P31277 338 aaPredicted RBP16.6■□□□□ 0.25
ATPAF1-208ENST00000526821 KCNA4P22459 653 aa16.53■□□□□ 0.24
ATPAF1-208ENST00000526821 NPM3O75607 178 aaKnown RBP16.48■□□□□ 0.23
ATPAF1-208ENST00000526821 DCAF8L1A6NGE4 600 aa16.44■□□□□ 0.22
ATPAF1-208ENST00000526821 DNAJC5BQ9UF47 199 aa16.07■□□□□ 0.16
ATPAF1-208ENST00000526821 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.92■□□□□ 0.14
ATPAF1-208ENST00000526821 RNF39Q9H2S5 420 aa15.8■□□□□ 0.12
ATPAF1-208ENST00000526821 SLC4A1APQ9BWU0 796 aaKnown RBP15.79■□□□□ 0.12
ATPAF1-208ENST00000526821 C1QBPQ07021 282 aaKnown RBP15.68■□□□□ 0.1
ATPAF1-208ENST00000526821 CACNB1Q02641 598 aaPredicted RBP15.67■□□□□ 0.1
ATPAF1-208ENST00000526821 SLC4A2P04920 1241 aa15.57■□□□□ 0.08
ATPAF1-208ENST00000526821 U3KPZ7 1027 aaPredicted RBP15.51■□□□□ 0.07
ATPAF1-208ENST00000526821 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.43■□□□□ 0.06
ATPAF1-208ENST00000526821 HNRNPUL2Q1KMD3 747 aaKnown RBP15.43■□□□□ 0.06
ATPAF1-208ENST00000526821 APLP2Q06481 763 aa15.39■□□□□ 0.05
ATPAF1-208ENST00000526821 FOXD4L1Q9NU39 408 aa15.39■□□□□ 0.05
ATPAF1-208ENST00000526821 MYCNP04198 464 aaPredicted RBP15.34■□□□□ 0.05
ATPAF1-208ENST00000526821 SAMD1Q6SPF0 538 aaPredicted RBP15.31■□□□□ 0.04
ATPAF1-208ENST00000526821 CAPN15O75808 1086 aa15.22■□□□□ 0.03
ATPAF1-208ENST00000526821 SPINK5Q9NQ38 1064 aaPredicted RBP15.14■□□□□ 0.01
ATPAF1-208ENST00000526821 ZBTB22O15209 634 aa15.12■□□□□ 0.01
ATPAF1-208ENST00000526821 ZNF219Q9P2Y4 722 aaPredicted RBP15.11■□□□□ 0.01
ATPAF1-208ENST00000526821 TRHP20396 242 aaPredicted RBP15.06■□□□□ 0
ATPAF1-208ENST00000526821 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
ATPAF1-208ENST00000526821 DSG3P32926 999 aa14.94□□□□□ -0.02
ATPAF1-208ENST00000526821 ATXN8OSP0DMR3 200 aa14.91□□□□□ -0.02
ATPAF1-208ENST00000526821 CSRNP3Q8WYN3 585 aa14.88□□□□□ -0.03
ATPAF1-208ENST00000526821 ABCB7O75027 752 aa14.84□□□□□ -0.03
ATPAF1-208ENST00000526821 ATF5Q9Y2D1 282 aaPredicted RBP14.77□□□□□ -0.05
ATPAF1-208ENST00000526821 POLA2Q14181 598 aa14.72□□□□□ -0.05
ATPAF1-208ENST00000526821 ZBTB12Q9Y330 459 aaPredicted RBP14.6□□□□□ -0.07
ATPAF1-208ENST00000526821 FBLN2P98095 1184 aa14.41□□□□□ -0.1
ATPAF1-208ENST00000526821 RBM42Q9BTD8 480 aaKnown RBP14.4□□□□□ -0.1
ATPAF1-208ENST00000526821 OSCARQ8IYS5 282 aa14.21□□□□□ -0.13
ATPAF1-208ENST00000526821 MKRN4PQ13434 485 aaPredicted RBP14.13□□□□□ -0.15
ATPAF1-208ENST00000526821 SPDYE2BA6NHP3 402 aa14.11□□□□□ -0.15
ATPAF1-208ENST00000526821 SPDYE6P0CI01 402 aa14.11□□□□□ -0.15
ATPAF1-208ENST00000526821 SPDYE2Q495Y8 402 aa14.11□□□□□ -0.15
ATPAF1-208ENST00000526821 AKT1S1Q96B36 256 aa14.1□□□□□ -0.15
ATPAF1-208ENST00000526821 NISCHQ9Y2I1 1504 aa14.03□□□□□ -0.16
ATPAF1-208ENST00000526821 ZNF692Q9BU19 519 aaPredicted RBP14.01□□□□□ -0.17
ATPAF1-208ENST00000526821 REM2Q8IYK8 340 aaPredicted RBP13.9□□□□□ -0.18
ATPAF1-208ENST00000526821 SSUH2Q9Y2M2 353 aa13.89□□□□□ -0.19
ATPAF1-208ENST00000526821 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
ATPAF1-208ENST00000526821 CHRDL2Q6WN34 429 aa13.81□□□□□ -0.2
ATPAF1-208ENST00000526821 PABPN1Q86U42 306 aaKnown RBP eCLIP13.78□□□□□ -0.2
ATPAF1-208ENST00000526821 SPDYE1Q8NFV5 336 aaPredicted RBP13.78□□□□□ -0.2
ATPAF1-208ENST00000526821 PITPNM1O00562 1244 aa13.73□□□□□ -0.21
ATPAF1-208ENST00000526821 CLEC11AQ9Y240 323 aa13.72□□□□□ -0.21
ATPAF1-208ENST00000526821 POTEHQ6S545 545 aa13.67□□□□□ -0.22
ATPAF1-208ENST00000526821 STAG3Q9UJ98 1225 aa13.61□□□□□ -0.23
ATPAF1-208ENST00000526821 PRR29P0C7W0 189 aa13.57□□□□□ -0.24
ATPAF1-208ENST00000526821 FKBP8Q14318 412 aa13.56□□□□□ -0.24
ATPAF1-208ENST00000526821 PIP4P2Q8N4L2 257 aa13.54□□□□□ -0.24
ATPAF1-208ENST00000526821 FXR2P51116 673 aaKnown RBP eCLIP13.53□□□□□ -0.24
ATPAF1-208ENST00000526821 PROM2Q8N271 834 aa13.46□□□□□ -0.25
ATPAF1-208ENST00000526821 PRKAR2AP13861 404 aaKnown RBP13.43□□□□□ -0.26
ATPAF1-208ENST00000526821 CHADLQ6NUI6 762 aa13.31□□□□□ -0.28
ATPAF1-208ENST00000526821 PLEKHG5O94827 1062 aa13.28□□□□□ -0.28
ATPAF1-208ENST00000526821 FBXO3Q9UK99 471 aa13.27□□□□□ -0.29
ATPAF1-208ENST00000526821 HAX1O00165 279 aa13.25□□□□□ -0.29
ATPAF1-208ENST00000526821 CREBZFQ9NS37 354 aa13.22□□□□□ -0.29
ATPAF1-208ENST00000526821 FARP1Q9Y4F1 1045 aaPredicted RBP13.21□□□□□ -0.29
ATPAF1-208ENST00000526821 MIER1Q8N108 512 aa13.17□□□□□ -0.3
ATPAF1-208ENST00000526821 NPM1P06748 294 aaKnown RBP eCLIP13.16□□□□□ -0.3
ATPAF1-208ENST00000526821 PLCD3Q8N3E9 789 aa13.16□□□□□ -0.3
ATPAF1-208ENST00000526821 ZBTB47Q9UFB7 747 aaPredicted RBP13.1□□□□□ -0.31
ATPAF1-208ENST00000526821 C19orf67A6NJJ6 358 aa13.08□□□□□ -0.32
ATPAF1-208ENST00000526821 PAK3O75914 559 aaPredicted RBP13.05□□□□□ -0.32
ATPAF1-208ENST00000526821 CD44P16070 742 aaKnown RBP13.05□□□□□ -0.32
ATPAF1-208ENST00000526821 SP7Q8TDD2 431 aaPredicted RBP13.03□□□□□ -0.32
ATPAF1-208ENST00000526821 MNX1P50219 401 aaPredicted RBP12.99□□□□□ -0.33
ATPAF1-208ENST00000526821 VASPP50552 380 aaPredicted RBP12.99□□□□□ -0.33
ATPAF1-208ENST00000526821 ZRANB1Q9UGI0 708 aa12.94□□□□□ -0.34
ATPAF1-208ENST00000526821 EVX2Q03828 476 aa12.93□□□□□ -0.34
ATPAF1-208ENST00000526821 KLHL34Q8N239 644 aa12.92□□□□□ -0.34
ATPAF1-208ENST00000526821 CLCN6P51797 869 aa12.9□□□□□ -0.34
ATPAF1-208ENST00000526821 ZNF579Q8NAF0 562 aaKnown RBP12.84□□□□□ -0.35
ATPAF1-208ENST00000526821 TSPYL2Q9H2G4 693 aaPredicted RBP12.84□□□□□ -0.35
ATPAF1-208ENST00000526821 FAM212AQ96EL1 285 aa12.8□□□□□ -0.36
ATPAF1-208ENST00000526821 GABBR2O75899 941 aa12.78□□□□□ -0.36
ATPAF1-208ENST00000526821 RASEFQ8IZ41 740 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms