RNA–Protein interactions for RNA: ENST00000525970.5

CSDE1-211, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 503 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-211ENST00000525970 AEBP2Q6ZN18 517 aaPredicted RBP26.28■■□□□ 1.8
CSDE1-211ENST00000525970 CHIC1Q5VXU3 224 aa25.1■■□□□ 1.61
CSDE1-211ENST00000525970 SENP3Q9H4L4 574 aaPredicted RBP22.51■■□□□ 1.19
CSDE1-211ENST00000525970 PHF23Q9BUL5 403 aaPredicted RBP22.17■■□□□ 1.14
CSDE1-211ENST00000525970 FOXD1Q16676 465 aa20.9■□□□□ 0.94
CSDE1-211ENST00000525970 PLPPR3Q6T4P5 718 aa20.11■□□□□ 0.81
CSDE1-211ENST00000525970 MSH5O43196 834 aa19.62■□□□□ 0.73
CSDE1-211ENST00000525970 PIAS4Q8N2W9 510 aaPredicted RBP19.56■□□□□ 0.72
CSDE1-211ENST00000525970 PPP6R1Q9UPN7 881 aa19.56■□□□□ 0.72
CSDE1-211ENST00000525970 ADRA2BP18089 450 aa19.5■□□□□ 0.71
CSDE1-211ENST00000525970 POTEDQ86YR6 584 aa18.94■□□□□ 0.62
CSDE1-211ENST00000525970 SCAF1Q9H7N4 1312 aaKnown RBP17.97■□□□□ 0.47
CSDE1-211ENST00000525970 MAPK8IP2Q13387 824 aaPredicted RBP17.87■□□□□ 0.45
CSDE1-211ENST00000525970 DMRT2Q9Y5R5 561 aa17.85■□□□□ 0.45
CSDE1-211ENST00000525970 PPP4R3CPQ6ZMV5 832 aa17.6■□□□□ 0.41
CSDE1-211ENST00000525970 CNKSR2Q8WXI2 1034 aa17.29■□□□□ 0.36
CSDE1-211ENST00000525970 HOXD11P31277 338 aaPredicted RBP17.23■□□□□ 0.35
CSDE1-211ENST00000525970 RNF216Q9NWF9 866 aaPredicted RBP17.12■□□□□ 0.33
CSDE1-211ENST00000525970 DCAF8L1A6NGE4 600 aa17.04■□□□□ 0.32
CSDE1-211ENST00000525970 NCBP3Q53F19 620 aaKnown RBP17.01■□□□□ 0.31
CSDE1-211ENST00000525970 CACNB1Q02641 598 aaPredicted RBP16.73■□□□□ 0.27
CSDE1-211ENST00000525970 RNF39Q9H2S5 420 aa16.7■□□□□ 0.26
CSDE1-211ENST00000525970 DNAJC5BQ9UF47 199 aa16.7■□□□□ 0.26
CSDE1-211ENST00000525970 NPM3O75607 178 aaKnown RBP16.69■□□□□ 0.26
CSDE1-211ENST00000525970 C1QBPQ07021 282 aaKnown RBP16.51■□□□□ 0.23
CSDE1-211ENST00000525970 KCNA4P22459 653 aa16.4■□□□□ 0.22
CSDE1-211ENST00000525970 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.39■□□□□ 0.213e-14■□□□□ 10.8
CSDE1-211ENST00000525970 U3KPZ7 1027 aaPredicted RBP16.04■□□□□ 0.16
CSDE1-211ENST00000525970 SLC4A2P04920 1241 aa15.91■□□□□ 0.14
CSDE1-211ENST00000525970 CAPN15O75808 1086 aa15.74■□□□□ 0.11
CSDE1-211ENST00000525970 SPINK5Q9NQ38 1064 aaPredicted RBP15.74■□□□□ 0.11
CSDE1-211ENST00000525970 APLP2Q06481 763 aa15.72■□□□□ 0.11
CSDE1-211ENST00000525970 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.7■□□□□ 0.1
CSDE1-211ENST00000525970 HNRNPUL2Q1KMD3 747 aaKnown RBP15.7■□□□□ 0.1
CSDE1-211ENST00000525970 DSG3P32926 999 aa15.65■□□□□ 0.1
CSDE1-211ENST00000525970 SAMD1Q6SPF0 538 aaPredicted RBP15.59■□□□□ 0.09
CSDE1-211ENST00000525970 ZNF219Q9P2Y4 722 aaPredicted RBP15.55■□□□□ 0.08
CSDE1-211ENST00000525970 SLC4A1APQ9BWU0 796 aaKnown RBP15.54■□□□□ 0.08
CSDE1-211ENST00000525970 TRHP20396 242 aaPredicted RBP15.49■□□□□ 0.07
CSDE1-211ENST00000525970 MYCNP04198 464 aaPredicted RBP15.48■□□□□ 0.07
CSDE1-211ENST00000525970 FOXD4L1Q9NU39 408 aa15.35■□□□□ 0.05
CSDE1-211ENST00000525970 ABCB7O75027 752 aa15.34■□□□□ 0.05
CSDE1-211ENST00000525970 POLA2Q14181 598 aa15.11■□□□□ 0.01
CSDE1-211ENST00000525970 ZBTB22O15209 634 aa15.06■□□□□ 0
CSDE1-211ENST00000525970 RBM42Q9BTD8 480 aaKnown RBP15.01□□□□□ -0.01
CSDE1-211ENST00000525970 ATF5Q9Y2D1 282 aaPredicted RBP15.01□□□□□ -0.01
CSDE1-211ENST00000525970 ATXN8OSP0DMR3 200 aa14.92□□□□□ -0.02
CSDE1-211ENST00000525970 ZBTB12Q9Y330 459 aaPredicted RBP14.91□□□□□ -0.02
CSDE1-211ENST00000525970 POTEHQ6S545 545 aa14.87□□□□□ -0.03
CSDE1-211ENST00000525970 AKT1S1Q96B36 256 aa14.65□□□□□ -0.06
CSDE1-211ENST00000525970 OSCARQ8IYS5 282 aa14.62□□□□□ -0.07
CSDE1-211ENST00000525970 CHRDL2Q6WN34 429 aa14.59□□□□□ -0.07
CSDE1-211ENST00000525970 FBLN2P98095 1184 aa14.54□□□□□ -0.08
CSDE1-211ENST00000525970 REM2Q8IYK8 340 aaPredicted RBP14.47□□□□□ -0.09
CSDE1-211ENST00000525970 CSRNP3Q8WYN3 585 aa14.46□□□□□ -0.09
CSDE1-211ENST00000525970 SPDYE2BA6NHP3 402 aa14.43□□□□□ -0.1
CSDE1-211ENST00000525970 SPDYE6P0CI01 402 aa14.43□□□□□ -0.1
CSDE1-211ENST00000525970 SPDYE2Q495Y8 402 aa14.43□□□□□ -0.1
CSDE1-211ENST00000525970 MKRN4PQ13434 485 aaPredicted RBP14.36□□□□□ -0.11
CSDE1-211ENST00000525970 PITPNM1O00562 1244 aa14.3□□□□□ -0.12
CSDE1-211ENST00000525970 EHMT2Q96KQ7 1210 aa14.27□□□□□ -0.13
CSDE1-211ENST00000525970 PIP4P2Q8N4L2 257 aa14.24□□□□□ -0.13
CSDE1-211ENST00000525970 SSUH2Q9Y2M2 353 aa14.22□□□□□ -0.13
CSDE1-211ENST00000525970 ZNF692Q9BU19 519 aaPredicted RBP14.21□□□□□ -0.13
CSDE1-211ENST00000525970 FXR2P51116 673 aaKnown RBP eCLIP14.2□□□□□ -0.14
CSDE1-211ENST00000525970 SPDYE1Q8NFV5 336 aaPredicted RBP14.15□□□□□ -0.14
CSDE1-211ENST00000525970 CLEC11AQ9Y240 323 aa14.04□□□□□ -0.16
CSDE1-211ENST00000525970 PABPN1Q86U42 306 aaKnown RBP eCLIP14□□□□□ -0.17
CSDE1-211ENST00000525970 SP7Q8TDD2 431 aaPredicted RBP13.99□□□□□ -0.17
CSDE1-211ENST00000525970 HAX1O00165 279 aa13.96□□□□□ -0.17
CSDE1-211ENST00000525970 PRKAR2AP13861 404 aaKnown RBP13.94□□□□□ -0.18
CSDE1-211ENST00000525970 PRR29P0C7W0 189 aa13.86□□□□□ -0.19
CSDE1-211ENST00000525970 SPDYE4A6NLX3 237 aa13.75□□□□□ -0.21
CSDE1-211ENST00000525970 CHADLQ6NUI6 762 aa13.75□□□□□ -0.21
CSDE1-211ENST00000525970 C19orf67A6NJJ6 358 aa13.74□□□□□ -0.21
CSDE1-211ENST00000525970 EVX2Q03828 476 aa13.73□□□□□ -0.21
CSDE1-211ENST00000525970 STAG3Q9UJ98 1225 aa13.71□□□□□ -0.21
CSDE1-211ENST00000525970 FARP1Q9Y4F1 1045 aaPredicted RBP13.62□□□□□ -0.23
CSDE1-211ENST00000525970 CREBZFQ9NS37 354 aa13.52□□□□□ -0.25
CSDE1-211ENST00000525970 CD44P16070 742 aaKnown RBP13.51□□□□□ -0.25
CSDE1-211ENST00000525970 GABBR2O75899 941 aa13.49□□□□□ -0.25
CSDE1-211ENST00000525970 PROM2Q8N271 834 aa13.47□□□□□ -0.25
CSDE1-211ENST00000525970 CLCN6P51797 869 aa13.43□□□□□ -0.26
CSDE1-211ENST00000525970 NPM1P06748 294 aaKnown RBP eCLIP13.34□□□□□ -0.27
CSDE1-211ENST00000525970 ZNF579Q8NAF0 562 aaKnown RBP13.34□□□□□ -0.27
CSDE1-211ENST00000525970 ZRANB1Q9UGI0 708 aa13.32□□□□□ -0.28
CSDE1-211ENST00000525970 MNX1P50219 401 aaPredicted RBP13.29□□□□□ -0.28
CSDE1-211ENST00000525970 PAK3O75914 559 aaPredicted RBP13.28□□□□□ -0.28
CSDE1-211ENST00000525970 POTEIP0CG38 1075 aa13.17□□□□□ -0.3
CSDE1-211ENST00000525970 PLEKHG5O94827 1062 aa13.16□□□□□ -0.3
CSDE1-211ENST00000525970 DCBLD2Q96PD2 775 aa13.16□□□□□ -0.3
CSDE1-211ENST00000525970 FKBP8Q14318 412 aa13.11□□□□□ -0.31
CSDE1-211ENST00000525970 LHX8Q68G74 356 aa13.11□□□□□ -0.31
CSDE1-211ENST00000525970 MIER1Q8N108 512 aa13.11□□□□□ -0.31
CSDE1-211ENST00000525970 PHF12Q96QT6 1004 aa13.11□□□□□ -0.31
CSDE1-211ENST00000525970 GALR2O43603 387 aaPredicted RBP13.1□□□□□ -0.31
CSDE1-211ENST00000525970 PLCD3Q8N3E9 789 aa13.02□□□□□ -0.33
CSDE1-211ENST00000525970 TSPYL2Q9H2G4 693 aaPredicted RBP13.02□□□□□ -0.33
CSDE1-211ENST00000525970 ZBTB47Q9UFB7 747 aaPredicted RBP13□□□□□ -0.33
CSDE1-211ENST00000525970 CCDC61Q9Y6R9 512 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms