RNA–Protein interactions for RNA: ENST00000520878.5

CLK4-206, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-206ENST00000520878 NISCHQ9Y2I1 1504 aa23.26■■□□□ 1.31
CLK4-206ENST00000520878 DCAF8L2P0C7V8 631 aa20.63■□□□□ 0.89
CLK4-206ENST00000520878 SHROOM4Q9ULL8 1493 aa20.44■□□□□ 0.86
CLK4-206ENST00000520878 SUPT5HO00267 1087 aaKnown RBP20.06■□□□□ 0.8
CLK4-206ENST00000520878 CCDC180Q9P1Z9 1646 aa19.55■□□□□ 0.72
CLK4-206ENST00000520878 ZCCHC6Q5VYS8 1495 aaKnown RBP19.5■□□□□ 0.71
CLK4-206ENST00000520878 ABCC9O60706 1549 aa19.18■□□□□ 0.66
CLK4-206ENST00000520878 CHIC1Q5VXU3 224 aa18.91■□□□□ 0.62
CLK4-206ENST00000520878 SCRIBQ14160 1630 aa18.8■□□□□ 0.6
CLK4-206ENST00000520878 DCAF1Q9Y4B6 1507 aa18.77■□□□□ 0.6
CLK4-206ENST00000520878 EHMT2Q96KQ7 1210 aa18.76■□□□□ 0.59
CLK4-206ENST00000520878 FAM9AQ8IZU1 332 aaPredicted RBP18.68■□□□□ 0.58
CLK4-206ENST00000520878 LOC105371045A0A1W2PR82 267 aa18.59■□□□□ 0.57
CLK4-206ENST00000520878 TRIM41Q8WV44 630 aa18.58■□□□□ 0.56
CLK4-206ENST00000520878 PABPN1Q86U42 306 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLK4-206ENST00000520878 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
CLK4-206ENST00000520878 MYO15BQ96JP2 1530 aa18.42■□□□□ 0.54
CLK4-206ENST00000520878 NACADO15069 1562 aa18.42■□□□□ 0.54
CLK4-206ENST00000520878 PCGF6Q9BYE7 350 aa18.4■□□□□ 0.54
CLK4-206ENST00000520878 CECR2Q9BXF3 1484 aa18.35■□□□□ 0.53
CLK4-206ENST00000520878 RB1CC1Q8TDY2 1594 aa18.29■□□□□ 0.52
CLK4-206ENST00000520878 MROH2BQ7Z745 1585 aa18.15■□□□□ 0.5
CLK4-206ENST00000520878 PPARGC1BQ86YN6 1023 aaKnown RBP18.07■□□□□ 0.48
CLK4-206ENST00000520878 TTBK1Q5TCY1 1321 aaPredicted RBP18.03■□□□□ 0.48
CLK4-206ENST00000520878 WIZO95785 1651 aa17.97■□□□□ 0.47
CLK4-206ENST00000520878 BAZ1AQ9NRL2 1556 aaPredicted RBP17.92■□□□□ 0.46
CLK4-206ENST00000520878 RANGAP1P46060 587 aaPredicted RBP17.91■□□□□ 0.46
CLK4-206ENST00000520878 UBTFP17480 764 aaKnown RBP17.91■□□□□ 0.46
CLK4-206ENST00000520878 TRIM26Q12899 539 aaPredicted RBP17.87■□□□□ 0.45
CLK4-206ENST00000520878 HRCP23327 699 aa17.84■□□□□ 0.45
CLK4-206ENST00000520878 CCDC88BA6NC98 1476 aa17.74■□□□□ 0.43
CLK4-206ENST00000520878 SMARCA4P51532 1647 aa17.7■□□□□ 0.42
CLK4-206ENST00000520878 ABCC8Q09428 1581 aa17.64■□□□□ 0.42
CLK4-206ENST00000520878 CSRNP3Q8WYN3 585 aa17.64■□□□□ 0.41
CLK4-206ENST00000520878 TOP2AP11388 1531 aaKnown RBP17.62■□□□□ 0.41
CLK4-206ENST00000520878 BAZ1BQ9UIG0 1483 aaKnown RBP17.59■□□□□ 0.41
CLK4-206ENST00000520878 UNC13AQ9UPW8 1703 aa17.56■□□□□ 0.4
CLK4-206ENST00000520878 APLP2Q06481 763 aa17.56■□□□□ 0.4
CLK4-206ENST00000520878 BICRAQ9NZM4 1560 aa17.55■□□□□ 0.4
CLK4-206ENST00000520878 SOGA1O94964 1423 aa17.53■□□□□ 0.4
CLK4-206ENST00000520878 SMARCA2P51531 1590 aa17.5■□□□□ 0.39
CLK4-206ENST00000520878 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
CLK4-206ENST00000520878 WRNQ14191 1432 aaPredicted RBP eCLIP17.49■□□□□ 0.39
CLK4-206ENST00000520878 CCER1Q8TC90 406 aaPredicted RBP17.48■□□□□ 0.39
CLK4-206ENST00000520878 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.43■□□□□ 0.38
CLK4-206ENST00000520878 RUSC2Q8N2Y8 1516 aa17.39■□□□□ 0.37
CLK4-206ENST00000520878 ZEB1P37275 1124 aaPredicted RBP17.37■□□□□ 0.37
CLK4-206ENST00000520878 HNRNPUL2Q1KMD3 747 aaKnown RBP17.33■□□□□ 0.36
CLK4-206ENST00000520878 ATP1B4Q9UN42 357 aaPredicted RBP17.32■□□□□ 0.36
CLK4-206ENST00000520878 CEP162Q5TB80 1403 aa17.32■□□□□ 0.36
CLK4-206ENST00000520878 EEA1Q15075 1411 aa17.24■□□□□ 0.35
CLK4-206ENST00000520878 TNIKQ9UKE5 1360 aa17.24■□□□□ 0.35
CLK4-206ENST00000520878 GOLGA3Q08378 1498 aa17.21■□□□□ 0.35
CLK4-206ENST00000520878 EIF4G1Q04637 1599 aaKnown RBP17.2■□□□□ 0.34
CLK4-206ENST00000520878 CLIP1P30622 1438 aa17.16■□□□□ 0.34
CLK4-206ENST00000520878 ITGAEP38570 1179 aa17.16■□□□□ 0.34
CLK4-206ENST00000520878 P3H3Q8IVL6 736 aa17.13■□□□□ 0.33
CLK4-206ENST00000520878 NCAPD3P42695 1498 aa17.13■□□□□ 0.33
CLK4-206ENST00000520878 CEP164Q9UPV0 1460 aa17.13■□□□□ 0.33
CLK4-206ENST00000520878 SYNJ1O43426 1573 aa17.11■□□□□ 0.33
CLK4-206ENST00000520878 PEG3Q9GZU2 1588 aa17.11■□□□□ 0.33
CLK4-206ENST00000520878 RAPGEF2Q9Y4G8 1499 aa17.05■□□□□ 0.32
CLK4-206ENST00000520878 KIF27Q86VH2 1401 aa17.03■□□□□ 0.32
CLK4-206ENST00000520878 CADPSQ9ULU8 1353 aa17.02■□□□□ 0.31
CLK4-206ENST00000520878 CUX2O14529 1486 aa16.97■□□□□ 0.31
CLK4-206ENST00000520878 DNAJC5BQ9UF47 199 aa16.94■□□□□ 0.3
CLK4-206ENST00000520878 HMGXB3Q12766 1538 aa16.93■□□□□ 0.3
CLK4-206ENST00000520878 CFTRP13569 1480 aa16.92■□□□□ 0.3
CLK4-206ENST00000520878 CC2D2AQ9P2K1 1620 aa16.88■□□□□ 0.29
CLK4-206ENST00000520878 CUX1P39880 1505 aa16.87■□□□□ 0.29
CLK4-206ENST00000520878 VPS8Q8N3P4 1428 aa16.87■□□□□ 0.29
CLK4-206ENST00000520878 FAM50AQ14320 339 aaKnown RBP16.87■□□□□ 0.29
CLK4-206ENST00000520878 KANK4Q5T7N3 995 aaPredicted RBP16.87■□□□□ 0.29
CLK4-206ENST00000520878 CARMIL1Q5VZK9 1371 aa16.86■□□□□ 0.29
CLK4-206ENST00000520878 TOP2BQ02880 1626 aa16.85■□□□□ 0.29
CLK4-206ENST00000520878 NESP48681 1621 aa16.83■□□□□ 0.28
CLK4-206ENST00000520878 FANCD2Q9BXW9 1451 aa16.83■□□□□ 0.28
CLK4-206ENST00000520878 ARID3CA6NKF2 412 aa16.82■□□□□ 0.28
CLK4-206ENST00000520878 IGF1RP08069 1367 aa16.79■□□□□ 0.28
CLK4-206ENST00000520878 DIEXFQ68CQ4 756 aaKnown RBP16.79■□□□□ 0.28
CLK4-206ENST00000520878 TDRD9Q8NDG6 1382 aaKnown RBP16.78■□□□□ 0.28
CLK4-206ENST00000520878 FGD5Q6ZNL6 1462 aa16.78■□□□□ 0.28
CLK4-206ENST00000520878 RAD54L2Q9Y4B4 1467 aa16.76■□□□□ 0.27
CLK4-206ENST00000520878 KIF21BO75037 1637 aa16.76■□□□□ 0.27
CLK4-206ENST00000520878 FBLN2P98095 1184 aa16.75■□□□□ 0.27
CLK4-206ENST00000520878 PRXQ9BXM0 1461 aa16.73■□□□□ 0.27
CLK4-206ENST00000520878 YTHDC1Q96MU7 727 aaKnown RBP16.71■□□□□ 0.27
CLK4-206ENST00000520878 PDS5BQ9NTI5 1447 aa16.65■□□□□ 0.26
CLK4-206ENST00000520878 ZNF316A6NFI3 1004 aaPredicted RBP16.65■□□□□ 0.26
CLK4-206ENST00000520878 ARAP1Q96P48 1450 aa16.65■□□□□ 0.26
CLK4-206ENST00000520878 NEUROD1Q13562 356 aa16.64■□□□□ 0.25
CLK4-206ENST00000520878 BIVM-ERCC5R4GMW8 1640 aa16.63■□□□□ 0.25
CLK4-206ENST00000520878 ERICH3Q5RHP9 1530 aa16.59■□□□□ 0.25
CLK4-206ENST00000520878 FHOD3Q2V2M9 1422 aa16.58■□□□□ 0.24
CLK4-206ENST00000520878 ARHGAP35Q9NRY4 1499 aa16.57■□□□□ 0.24
CLK4-206ENST00000520878 TOPBP1Q92547 1522 aa16.57■□□□□ 0.24
CLK4-206ENST00000520878 POLA1P09884 1462 aaPredicted RBP16.57■□□□□ 0.24
CLK4-206ENST00000520878 CCNB3Q8WWL7 1395 aa16.56■□□□□ 0.24
CLK4-206ENST00000520878 MTUS2Q5JR59 1369 aa16.53■□□□□ 0.24
CLK4-206ENST00000520878 CENPBP07199 599 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms