RNA–Protein interactions for RNA: ENST00000517138.1

SCARNA1-201, small Cajal body-specific RNA 1, humanhuman

BASIC

Gene SCARNA1, Length 166 nt, Biotype scaRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA1-201ENST00000517138 AEBP2Q6ZN18 517 aaPredicted RBP31.28■■■□□ 2.6
SCARNA1-201ENST00000517138 CHIC1Q5VXU3 224 aa30.27■■■□□ 2.44
SCARNA1-201ENST00000517138 PHF23Q9BUL5 403 aaPredicted RBP26.72■■□□□ 1.87
SCARNA1-201ENST00000517138 SENP3Q9H4L4 574 aaPredicted RBP26.38■■□□□ 1.81
SCARNA1-201ENST00000517138 FOXD1Q16676 465 aa24.63■■□□□ 1.53
SCARNA1-201ENST00000517138 PLPPR3Q6T4P5 718 aa24.44■■□□□ 1.5
SCARNA1-201ENST00000517138 PPP6R1Q9UPN7 881 aa23.65■■□□□ 1.38
SCARNA1-201ENST00000517138 ADRA2BP18089 450 aa23.59■■□□□ 1.37
SCARNA1-201ENST00000517138 PIAS4Q8N2W9 510 aaPredicted RBP23.14■■□□□ 1.29
SCARNA1-201ENST00000517138 MSH5O43196 834 aa22.62■■□□□ 1.21
SCARNA1-201ENST00000517138 PPP4R3CPQ6ZMV5 832 aa21.59■■□□□ 1.05
SCARNA1-201ENST00000517138 MAPK8IP2Q13387 824 aaPredicted RBP21.5■■□□□ 1.03
SCARNA1-201ENST00000517138 SCAF1Q9H7N4 1312 aaKnown RBP21.34■■□□□ 1.01
SCARNA1-201ENST00000517138 DMRT2Q9Y5R5 561 aa21.07■□□□□ 0.96
SCARNA1-201ENST00000517138 POTEDQ86YR6 584 aa21.03■□□□□ 0.96
SCARNA1-201ENST00000517138 KCNA4P22459 653 aa20.97■□□□□ 0.95
SCARNA1-201ENST00000517138 CNKSR2Q8WXI2 1034 aa20.95■□□□□ 0.94
SCARNA1-201ENST00000517138 NCBP3Q53F19 620 aaKnown RBP20.84■□□□□ 0.93
SCARNA1-201ENST00000517138 NPM3O75607 178 aaKnown RBP20.69■□□□□ 0.9
SCARNA1-201ENST00000517138 RNF216Q9NWF9 866 aaPredicted RBP20.58■□□□□ 0.89
SCARNA1-201ENST00000517138 HOXD11P31277 338 aaPredicted RBP20.57■□□□□ 0.88
SCARNA1-201ENST00000517138 DCAF8L1A6NGE4 600 aa20.21■□□□□ 0.83
SCARNA1-201ENST00000517138 DNAJC5BQ9UF47 199 aa19.97■□□□□ 0.79
SCARNA1-201ENST00000517138 SLC4A1APQ9BWU0 796 aaKnown RBP19.86■□□□□ 0.77
SCARNA1-201ENST00000517138 SLC4A2P04920 1241 aa19.62■□□□□ 0.73
SCARNA1-201ENST00000517138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.59■□□□□ 0.73
SCARNA1-201ENST00000517138 RNF39Q9H2S5 420 aa19.46■□□□□ 0.71
SCARNA1-201ENST00000517138 ZBTB22O15209 634 aa19.35■□□□□ 0.69
SCARNA1-201ENST00000517138 U3KPZ7 1027 aaPredicted RBP19.34■□□□□ 0.69
SCARNA1-201ENST00000517138 FOXD4L1Q9NU39 408 aa19.24■□□□□ 0.67
SCARNA1-201ENST00000517138 EHMT2Q96KQ7 1210 aa19.19■□□□□ 0.66
SCARNA1-201ENST00000517138 C1QBPQ07021 282 aaKnown RBP19.13■□□□□ 0.65
SCARNA1-201ENST00000517138 CACNB1Q02641 598 aaPredicted RBP19.05■□□□□ 0.64
SCARNA1-201ENST00000517138 CSRNP3Q8WYN3 585 aa19.05■□□□□ 0.64
SCARNA1-201ENST00000517138 MYCNP04198 464 aaPredicted RBP19.03■□□□□ 0.64
SCARNA1-201ENST00000517138 SPINK5Q9NQ38 1064 aaPredicted RBP18.89■□□□□ 0.61
SCARNA1-201ENST00000517138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.83■□□□□ 0.6
SCARNA1-201ENST00000517138 HNRNPUL2Q1KMD3 747 aaKnown RBP18.83■□□□□ 0.6
SCARNA1-201ENST00000517138 SAMD1Q6SPF0 538 aaPredicted RBP18.8■□□□□ 0.6
SCARNA1-201ENST00000517138 CAPN15O75808 1086 aa18.73■□□□□ 0.59
SCARNA1-201ENST00000517138 ATF5Q9Y2D1 282 aaPredicted RBP18.72■□□□□ 0.59
SCARNA1-201ENST00000517138 TRHP20396 242 aaPredicted RBP18.63■□□□□ 0.57
SCARNA1-201ENST00000517138 APLP2Q06481 763 aa18.62■□□□□ 0.57
SCARNA1-201ENST00000517138 ZNF219Q9P2Y4 722 aaPredicted RBP18.51■□□□□ 0.55
SCARNA1-201ENST00000517138 ATXN8OSP0DMR3 200 aa18.5■□□□□ 0.55
SCARNA1-201ENST00000517138 DSG3P32926 999 aa18.48■□□□□ 0.55
SCARNA1-201ENST00000517138 ABCB7O75027 752 aa18.43■□□□□ 0.54
SCARNA1-201ENST00000517138 POLA2Q14181 598 aa18.28■□□□□ 0.52
SCARNA1-201ENST00000517138 MKRN4PQ13434 485 aaPredicted RBP17.86■□□□□ 0.45
SCARNA1-201ENST00000517138 ZBTB12Q9Y330 459 aaPredicted RBP17.79■□□□□ 0.44
SCARNA1-201ENST00000517138 FBLN2P98095 1184 aa17.72■□□□□ 0.43
SCARNA1-201ENST00000517138 OSCARQ8IYS5 282 aa17.7■□□□□ 0.42
SCARNA1-201ENST00000517138 RBM42Q9BTD8 480 aaKnown RBP17.47■□□□□ 0.39
SCARNA1-201ENST00000517138 SPDYE2BA6NHP3 402 aa17.38■□□□□ 0.37
SCARNA1-201ENST00000517138 SPDYE6P0CI01 402 aa17.38■□□□□ 0.37
SCARNA1-201ENST00000517138 SPDYE2Q495Y8 402 aa17.38■□□□□ 0.37
SCARNA1-201ENST00000517138 ZNF692Q9BU19 519 aaPredicted RBP17.34■□□□□ 0.37
SCARNA1-201ENST00000517138 SSUH2Q9Y2M2 353 aa17.29■□□□□ 0.36
SCARNA1-201ENST00000517138 SPDYE4A6NLX3 237 aa17.28■□□□□ 0.36
SCARNA1-201ENST00000517138 AKT1S1Q96B36 256 aa17.28■□□□□ 0.36
SCARNA1-201ENST00000517138 FKBP8Q14318 412 aa17.19■□□□□ 0.34
SCARNA1-201ENST00000517138 REM2Q8IYK8 340 aaPredicted RBP17.18■□□□□ 0.34
SCARNA1-201ENST00000517138 PABPN1Q86U42 306 aaKnown RBP eCLIP17.14■□□□□ 0.33
SCARNA1-201ENST00000517138 PITPNM1O00562 1244 aa17.01■□□□□ 0.31
SCARNA1-201ENST00000517138 PROM2Q8N271 834 aa16.98■□□□□ 0.31
SCARNA1-201ENST00000517138 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
SCARNA1-201ENST00000517138 CHRDL2Q6WN34 429 aa16.91■□□□□ 0.3
SCARNA1-201ENST00000517138 SPDYE1Q8NFV5 336 aaPredicted RBP16.9■□□□□ 0.3
SCARNA1-201ENST00000517138 PRR29P0C7W0 189 aa16.7■□□□□ 0.26
SCARNA1-201ENST00000517138 PIP4P2Q8N4L2 257 aa16.7■□□□□ 0.26
SCARNA1-201ENST00000517138 FXR2P51116 673 aaKnown RBP eCLIP16.69■□□□□ 0.26
SCARNA1-201ENST00000517138 STAG3Q9UJ98 1225 aa16.68■□□□□ 0.26
SCARNA1-201ENST00000517138 CHADLQ6NUI6 762 aa16.61■□□□□ 0.25
SCARNA1-201ENST00000517138 POTEHQ6S545 545 aa16.58■□□□□ 0.24
SCARNA1-201ENST00000517138 PRKAR2AP13861 404 aaKnown RBP16.56■□□□□ 0.24
SCARNA1-201ENST00000517138 CREBZFQ9NS37 354 aa16.53■□□□□ 0.24
SCARNA1-201ENST00000517138 FBXO3Q9UK99 471 aa16.46■□□□□ 0.23
SCARNA1-201ENST00000517138 MIER1Q8N108 512 aa16.39■□□□□ 0.21
SCARNA1-201ENST00000517138 VASPP50552 380 aaPredicted RBP16.36■□□□□ 0.21
SCARNA1-201ENST00000517138 MNX1P50219 401 aaPredicted RBP16.35■□□□□ 0.21
SCARNA1-201ENST00000517138 FARP1Q9Y4F1 1045 aaPredicted RBP16.34■□□□□ 0.21
SCARNA1-201ENST00000517138 PLCD3Q8N3E9 789 aa16.33■□□□□ 0.2
SCARNA1-201ENST00000517138 IFNLR1Q8IU57 520 aaPredicted RBP16.2■□□□□ 0.18
SCARNA1-201ENST00000517138 PLEKHG5O94827 1062 aa16.18■□□□□ 0.18
SCARNA1-201ENST00000517138 HAX1O00165 279 aa16.17■□□□□ 0.18
SCARNA1-201ENST00000517138 EVX2Q03828 476 aa16.17■□□□□ 0.18
SCARNA1-201ENST00000517138 C19orf67A6NJJ6 358 aa16.13■□□□□ 0.17
SCARNA1-201ENST00000517138 NPM1P06748 294 aaKnown RBP eCLIP16.1■□□□□ 0.17
SCARNA1-201ENST00000517138 KLHL34Q8N239 644 aa16.09■□□□□ 0.17
SCARNA1-201ENST00000517138 CD44P16070 742 aaKnown RBP16.06■□□□□ 0.16
SCARNA1-201ENST00000517138 NUBP1P53384 320 aa16.05■□□□□ 0.16
SCARNA1-201ENST00000517138 RASEFQ8IZ41 740 aa16.04■□□□□ 0.16
SCARNA1-201ENST00000517138 ZBTB47Q9UFB7 747 aaPredicted RBP16.04■□□□□ 0.16
SCARNA1-201ENST00000517138 TSPYL2Q9H2G4 693 aaPredicted RBP15.97■□□□□ 0.15
SCARNA1-201ENST00000517138 ZRANB1Q9UGI0 708 aa15.95■□□□□ 0.14
SCARNA1-201ENST00000517138 SPOCK2Q92563 424 aa15.93■□□□□ 0.14
SCARNA1-201ENST00000517138 SP7Q8TDD2 431 aaPredicted RBP15.86■□□□□ 0.13
SCARNA1-201ENST00000517138 PHF12Q96QT6 1004 aa15.86■□□□□ 0.13
SCARNA1-201ENST00000517138 PAK3O75914 559 aaPredicted RBP15.85■□□□□ 0.13
SCARNA1-201ENST00000517138 CCDC61Q9Y6R9 512 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms