RNA–Protein interactions for RNA: ENST00000516850.1

RNU6-1088P-201, Transcript of RNA, U6 small nuclear 1088, pseudogene, humanhuman

BASIC

Gene RNU6-1088P, Length 104 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-1088P-201ENST00000516850 AEBP2Q6ZN18 517 aaPredicted RBP18.68■□□□□ 0.58
RNU6-1088P-201ENST00000516850 CHIC1Q5VXU3 224 aa18.03■□□□□ 0.48
RNU6-1088P-201ENST00000516850 SENP3Q9H4L4 574 aaPredicted RBP16.01■□□□□ 0.15
RNU6-1088P-201ENST00000516850 PHF23Q9BUL5 403 aaPredicted RBP15.81■□□□□ 0.12
RNU6-1088P-201ENST00000516850 FOXD1Q16676 465 aa14.83□□□□□ -0.04
RNU6-1088P-201ENST00000516850 PLPPR3Q6T4P5 718 aa14.57□□□□□ -0.08
RNU6-1088P-201ENST00000516850 ADRA2BP18089 450 aa14.02□□□□□ -0.17
RNU6-1088P-201ENST00000516850 PPP6R1Q9UPN7 881 aa14.01□□□□□ -0.17
RNU6-1088P-201ENST00000516850 PIAS4Q8N2W9 510 aaPredicted RBP13.97□□□□□ -0.17
RNU6-1088P-201ENST00000516850 MSH5O43196 834 aa13.88□□□□□ -0.19
RNU6-1088P-201ENST00000516850 POTEDQ86YR6 584 aa13.08□□□□□ -0.32
RNU6-1088P-201ENST00000516850 SCAF1Q9H7N4 1312 aaKnown RBP12.96□□□□□ -0.33
RNU6-1088P-201ENST00000516850 MAPK8IP2Q13387 824 aaPredicted RBP12.8□□□□□ -0.36
RNU6-1088P-201ENST00000516850 PPP4R3CPQ6ZMV5 832 aa12.77□□□□□ -0.37
RNU6-1088P-201ENST00000516850 DMRT2Q9Y5R5 561 aa12.69□□□□□ -0.38
RNU6-1088P-201ENST00000516850 CNKSR2Q8WXI2 1034 aa12.5□□□□□ -0.41
RNU6-1088P-201ENST00000516850 NCBP3Q53F19 620 aaKnown RBP12.44□□□□□ -0.42
RNU6-1088P-201ENST00000516850 RNF216Q9NWF9 866 aaPredicted RBP12.32□□□□□ -0.44
RNU6-1088P-201ENST00000516850 HOXD11P31277 338 aaPredicted RBP12.31□□□□□ -0.44
RNU6-1088P-201ENST00000516850 DCAF8L1A6NGE4 600 aa12.26□□□□□ -0.45
RNU6-1088P-201ENST00000516850 NPM3O75607 178 aaKnown RBP12.15□□□□□ -0.46
RNU6-1088P-201ENST00000516850 KCNA4P22459 653 aa12.11□□□□□ -0.47
RNU6-1088P-201ENST00000516850 DNAJC5BQ9UF47 199 aa11.86□□□□□ -0.51
RNU6-1088P-201ENST00000516850 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.82□□□□□ -0.52
RNU6-1088P-201ENST00000516850 RNF39Q9H2S5 420 aa11.79□□□□□ -0.52
RNU6-1088P-201ENST00000516850 CACNB1Q02641 598 aaPredicted RBP11.78□□□□□ -0.52
RNU6-1088P-201ENST00000516850 C1QBPQ07021 282 aaKnown RBP11.69□□□□□ -0.54
RNU6-1088P-201ENST00000516850 SLC4A1APQ9BWU0 796 aaKnown RBP11.53□□□□□ -0.56
RNU6-1088P-201ENST00000516850 SLC4A2P04920 1241 aa11.5□□□□□ -0.57
RNU6-1088P-201ENST00000516850 U3KPZ7 1027 aaPredicted RBP11.5□□□□□ -0.57
RNU6-1088P-201ENST00000516850 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.38□□□□□ -0.59
RNU6-1088P-201ENST00000516850 HNRNPUL2Q1KMD3 747 aaKnown RBP11.38□□□□□ -0.59
RNU6-1088P-201ENST00000516850 APLP2Q06481 763 aa11.36□□□□□ -0.59
RNU6-1088P-201ENST00000516850 CAPN15O75808 1086 aa11.33□□□□□ -0.6
RNU6-1088P-201ENST00000516850 SAMD1Q6SPF0 538 aaPredicted RBP11.29□□□□□ -0.6
RNU6-1088P-201ENST00000516850 MYCNP04198 464 aaPredicted RBP11.28□□□□□ -0.6
RNU6-1088P-201ENST00000516850 FOXD4L1Q9NU39 408 aa11.28□□□□□ -0.6
RNU6-1088P-201ENST00000516850 SPINK5Q9NQ38 1064 aaPredicted RBP11.27□□□□□ -0.61
RNU6-1088P-201ENST00000516850 TRHP20396 242 aaPredicted RBP11.2□□□□□ -0.62
RNU6-1088P-201ENST00000516850 ZNF219Q9P2Y4 722 aaPredicted RBP11.2□□□□□ -0.62
RNU6-1088P-201ENST00000516850 DSG3P32926 999 aa11.13□□□□□ -0.63
RNU6-1088P-201ENST00000516850 ZBTB22O15209 634 aa11.07□□□□□ -0.64
RNU6-1088P-201ENST00000516850 ABCB7O75027 752 aa11.04□□□□□ -0.64
RNU6-1088P-201ENST00000516850 ATXN8OSP0DMR3 200 aa10.92□□□□□ -0.66
RNU6-1088P-201ENST00000516850 POLA2Q14181 598 aa10.92□□□□□ -0.66
RNU6-1088P-201ENST00000516850 ATF5Q9Y2D1 282 aaPredicted RBP10.91□□□□□ -0.66
RNU6-1088P-201ENST00000516850 EHMT2Q96KQ7 1210 aa10.86□□□□□ -0.67
RNU6-1088P-201ENST00000516850 CSRNP3Q8WYN3 585 aa10.83□□□□□ -0.68
RNU6-1088P-201ENST00000516850 ZBTB12Q9Y330 459 aaPredicted RBP10.77□□□□□ -0.69
RNU6-1088P-201ENST00000516850 RBM42Q9BTD8 480 aaKnown RBP10.7□□□□□ -0.7
RNU6-1088P-201ENST00000516850 FBLN2P98095 1184 aa10.62□□□□□ -0.71
RNU6-1088P-201ENST00000516850 OSCARQ8IYS5 282 aa10.53□□□□□ -0.72
RNU6-1088P-201ENST00000516850 AKT1S1Q96B36 256 aa10.47□□□□□ -0.73
RNU6-1088P-201ENST00000516850 SPDYE2BA6NHP3 402 aa10.42□□□□□ -0.74
RNU6-1088P-201ENST00000516850 SPDYE6P0CI01 402 aa10.42□□□□□ -0.74
RNU6-1088P-201ENST00000516850 MKRN4PQ13434 485 aaPredicted RBP10.42□□□□□ -0.74
RNU6-1088P-201ENST00000516850 SPDYE2Q495Y8 402 aa10.42□□□□□ -0.74
RNU6-1088P-201ENST00000516850 ZNF692Q9BU19 519 aaPredicted RBP10.36□□□□□ -0.75
RNU6-1088P-201ENST00000516850 REM2Q8IYK8 340 aaPredicted RBP10.34□□□□□ -0.75
RNU6-1088P-201ENST00000516850 POTEHQ6S545 545 aa10.33□□□□□ -0.76
RNU6-1088P-201ENST00000516850 CHRDL2Q6WN34 429 aa10.32□□□□□ -0.76
RNU6-1088P-201ENST00000516850 SSUH2Q9Y2M2 353 aa10.24□□□□□ -0.77
RNU6-1088P-201ENST00000516850 PITPNM1O00562 1244 aa10.21□□□□□ -0.77
RNU6-1088P-201ENST00000516850 SPDYE1Q8NFV5 336 aaPredicted RBP10.2□□□□□ -0.78
RNU6-1088P-201ENST00000516850 CLEC11AQ9Y240 323 aa10.2□□□□□ -0.78
RNU6-1088P-201ENST00000516850 PABPN1Q86U42 306 aaKnown RBP eCLIP10.18□□□□□ -0.78
RNU6-1088P-201ENST00000516850 SPDYE4A6NLX3 237 aa10.14□□□□□ -0.79
RNU6-1088P-201ENST00000516850 PIP4P2Q8N4L2 257 aa10.1□□□□□ -0.79
RNU6-1088P-201ENST00000516850 FXR2P51116 673 aaKnown RBP eCLIP10.08□□□□□ -0.8
RNU6-1088P-201ENST00000516850 PRR29P0C7W0 189 aa10.05□□□□□ -0.8
RNU6-1088P-201ENST00000516850 STAG3Q9UJ98 1225 aa10.01□□□□□ -0.81
RNU6-1088P-201ENST00000516850 PRKAR2AP13861 404 aaKnown RBP9.99□□□□□ -0.81
RNU6-1088P-201ENST00000516850 HAX1O00165 279 aa9.93□□□□□ -0.82
RNU6-1088P-201ENST00000516850 CHADLQ6NUI6 762 aa9.91□□□□□ -0.82
RNU6-1088P-201ENST00000516850 FKBP8Q14318 412 aa9.87□□□□□ -0.83
RNU6-1088P-201ENST00000516850 PROM2Q8N271 834 aa9.83□□□□□ -0.84
RNU6-1088P-201ENST00000516850 SP7Q8TDD2 431 aaPredicted RBP9.79□□□□□ -0.84
RNU6-1088P-201ENST00000516850 FARP1Q9Y4F1 1045 aaPredicted RBP9.79□□□□□ -0.84
RNU6-1088P-201ENST00000516850 CREBZFQ9NS37 354 aa9.77□□□□□ -0.85
RNU6-1088P-201ENST00000516850 C19orf67A6NJJ6 358 aa9.75□□□□□ -0.85
RNU6-1088P-201ENST00000516850 PLEKHG5O94827 1062 aa9.75□□□□□ -0.85
RNU6-1088P-201ENST00000516850 NPM1P06748 294 aaKnown RBP eCLIP9.72□□□□□ -0.85
RNU6-1088P-201ENST00000516850 CD44P16070 742 aaKnown RBP9.7□□□□□ -0.86
RNU6-1088P-201ENST00000516850 EVX2Q03828 476 aa9.7□□□□□ -0.86
RNU6-1088P-201ENST00000516850 MIER1Q8N108 512 aa9.69□□□□□ -0.86
RNU6-1088P-201ENST00000516850 PLCD3Q8N3E9 789 aa9.66□□□□□ -0.86
RNU6-1088P-201ENST00000516850 FBXO3Q9UK99 471 aa9.66□□□□□ -0.86
RNU6-1088P-201ENST00000516850 PAK3O75914 559 aaPredicted RBP9.65□□□□□ -0.86
RNU6-1088P-201ENST00000516850 ZRANB1Q9UGI0 708 aa9.61□□□□□ -0.87
RNU6-1088P-201ENST00000516850 MNX1P50219 401 aaPredicted RBP9.6□□□□□ -0.87
RNU6-1088P-201ENST00000516850 ZBTB47Q9UFB7 747 aaPredicted RBP9.59□□□□□ -0.87
RNU6-1088P-201ENST00000516850 CLCN6P51797 869 aa9.58□□□□□ -0.88
RNU6-1088P-201ENST00000516850 GABBR2O75899 941 aa9.56□□□□□ -0.88
RNU6-1088P-201ENST00000516850 ZNF579Q8NAF0 562 aaKnown RBP9.52□□□□□ -0.89
RNU6-1088P-201ENST00000516850 TSPYL2Q9H2G4 693 aaPredicted RBP9.5□□□□□ -0.89
RNU6-1088P-201ENST00000516850 VASPP50552 380 aaPredicted RBP9.46□□□□□ -0.9
RNU6-1088P-201ENST00000516850 KLHL34Q8N239 644 aa9.46□□□□□ -0.9
RNU6-1088P-201ENST00000516850 PHF12Q96QT6 1004 aa9.44□□□□□ -0.9
RNU6-1088P-201ENST00000516850 DCBLD2Q96PD2 775 aa9.43□□□□□ -0.9
RNU6-1088P-201ENST00000516850 RASEFQ8IZ41 740 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms