RNA–Protein interactions for RNA: ENST00000515943.1

RNU4-29P-201, Transcript of RNA, U4 small nuclear 29, pseudogene, humanhuman

BASIC

Gene RNU4-29P, Length 174 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-29P-201ENST00000515943 AEBP2Q6ZN18 517 aaPredicted RBP18.68■□□□□ 0.58
RNU4-29P-201ENST00000515943 CHIC1Q5VXU3 224 aa18.13■□□□□ 0.49
RNU4-29P-201ENST00000515943 PHF23Q9BUL5 403 aaPredicted RBP15.94■□□□□ 0.14
RNU4-29P-201ENST00000515943 SENP3Q9H4L4 574 aaPredicted RBP15.87■□□□□ 0.13
RNU4-29P-201ENST00000515943 FOXD1Q16676 465 aa14.74□□□□□ -0.05
RNU4-29P-201ENST00000515943 PLPPR3Q6T4P5 718 aa14.66□□□□□ -0.06
RNU4-29P-201ENST00000515943 POTEDQ86YR6 584 aa14.27□□□□□ -0.13
RNU4-29P-201ENST00000515943 PPP6R1Q9UPN7 881 aa14.08□□□□□ -0.16
RNU4-29P-201ENST00000515943 ADRA2BP18089 450 aa14.06□□□□□ -0.16
RNU4-29P-201ENST00000515943 PIAS4Q8N2W9 510 aaPredicted RBP13.87□□□□□ -0.19
RNU4-29P-201ENST00000515943 MSH5O43196 834 aa13.64□□□□□ -0.23
RNU4-29P-201ENST00000515943 PPP4R3CPQ6ZMV5 832 aa12.9□□□□□ -0.34
RNU4-29P-201ENST00000515943 SCAF1Q9H7N4 1312 aaKnown RBP12.84□□□□□ -0.35
RNU4-29P-201ENST00000515943 MAPK8IP2Q13387 824 aaPredicted RBP12.78□□□□□ -0.36
RNU4-29P-201ENST00000515943 DMRT2Q9Y5R5 561 aa12.65□□□□□ -0.38
RNU4-29P-201ENST00000515943 CNKSR2Q8WXI2 1034 aa12.56□□□□□ -0.4
RNU4-29P-201ENST00000515943 NCBP3Q53F19 620 aaKnown RBP12.52□□□□□ -0.41
RNU4-29P-201ENST00000515943 KCNA4P22459 653 aa12.47□□□□□ -0.41
RNU4-29P-201ENST00000515943 NPM3O75607 178 aaKnown RBP12.36□□□□□ -0.43
RNU4-29P-201ENST00000515943 RNF216Q9NWF9 866 aaPredicted RBP12.36□□□□□ -0.43
RNU4-29P-201ENST00000515943 HOXD11P31277 338 aaPredicted RBP12.35□□□□□ -0.43
RNU4-29P-201ENST00000515943 DCAF8L1A6NGE4 600 aa12.06□□□□□ -0.48
RNU4-29P-201ENST00000515943 DNAJC5BQ9UF47 199 aa12.05□□□□□ -0.48
RNU4-29P-201ENST00000515943 CACNB1Q02641 598 aaPredicted RBP11.96□□□□□ -0.49
RNU4-29P-201ENST00000515943 SLC4A1APQ9BWU0 796 aaKnown RBP11.85□□□□□ -0.51
RNU4-29P-201ENST00000515943 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.73□□□□□ -0.53
RNU4-29P-201ENST00000515943 SLC4A2P04920 1241 aa11.71□□□□□ -0.53
RNU4-29P-201ENST00000515943 RNF39Q9H2S5 420 aa11.68□□□□□ -0.54
RNU4-29P-201ENST00000515943 U3KPZ7 1027 aaPredicted RBP11.57□□□□□ -0.56
RNU4-29P-201ENST00000515943 C1QBPQ07021 282 aaKnown RBP11.52□□□□□ -0.57
RNU4-29P-201ENST00000515943 FOXD4L1Q9NU39 408 aa11.52□□□□□ -0.57
RNU4-29P-201ENST00000515943 ZBTB22O15209 634 aa11.5□□□□□ -0.57
RNU4-29P-201ENST00000515943 MYCNP04198 464 aaPredicted RBP11.42□□□□□ -0.58
RNU4-29P-201ENST00000515943 EHMT2Q96KQ7 1210 aa11.37□□□□□ -0.59
RNU4-29P-201ENST00000515943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.35□□□□□ -0.59
RNU4-29P-201ENST00000515943 HNRNPUL2Q1KMD3 747 aaKnown RBP11.35□□□□□ -0.59
RNU4-29P-201ENST00000515943 SAMD1Q6SPF0 538 aaPredicted RBP11.31□□□□□ -0.6
RNU4-29P-201ENST00000515943 CSRNP3Q8WYN3 585 aa11.31□□□□□ -0.6
RNU4-29P-201ENST00000515943 APLP2Q06481 763 aa11.26□□□□□ -0.61
RNU4-29P-201ENST00000515943 SPINK5Q9NQ38 1064 aaPredicted RBP11.26□□□□□ -0.61
RNU4-29P-201ENST00000515943 CAPN15O75808 1086 aa11.2□□□□□ -0.62
RNU4-29P-201ENST00000515943 ZNF219Q9P2Y4 722 aaPredicted RBP11.14□□□□□ -0.63
RNU4-29P-201ENST00000515943 ATXN8OSP0DMR3 200 aa11.13□□□□□ -0.63
RNU4-29P-201ENST00000515943 TRHP20396 242 aaPredicted RBP11.12□□□□□ -0.63
RNU4-29P-201ENST00000515943 ATF5Q9Y2D1 282 aaPredicted RBP11.12□□□□□ -0.63
RNU4-29P-201ENST00000515943 DSG3P32926 999 aa11.06□□□□□ -0.64
RNU4-29P-201ENST00000515943 POTEHQ6S545 545 aa11.01□□□□□ -0.65
RNU4-29P-201ENST00000515943 ABCB7O75027 752 aa10.99□□□□□ -0.65
RNU4-29P-201ENST00000515943 POLA2Q14181 598 aa10.91□□□□□ -0.66
RNU4-29P-201ENST00000515943 ZBTB12Q9Y330 459 aaPredicted RBP10.75□□□□□ -0.69
RNU4-29P-201ENST00000515943 MKRN4PQ13434 485 aaPredicted RBP10.65□□□□□ -0.7
RNU4-29P-201ENST00000515943 FBLN2P98095 1184 aa10.64□□□□□ -0.71
RNU4-29P-201ENST00000515943 OSCARQ8IYS5 282 aa10.58□□□□□ -0.72
RNU4-29P-201ENST00000515943 RBM42Q9BTD8 480 aaKnown RBP10.55□□□□□ -0.72
RNU4-29P-201ENST00000515943 SPDYE2BA6NHP3 402 aa10.45□□□□□ -0.74
RNU4-29P-201ENST00000515943 SPDYE6P0CI01 402 aa10.45□□□□□ -0.74
RNU4-29P-201ENST00000515943 SPDYE2Q495Y8 402 aa10.45□□□□□ -0.74
RNU4-29P-201ENST00000515943 AKT1S1Q96B36 256 aa10.39□□□□□ -0.75
RNU4-29P-201ENST00000515943 SSUH2Q9Y2M2 353 aa10.38□□□□□ -0.75
RNU4-29P-201ENST00000515943 ZNF692Q9BU19 519 aaPredicted RBP10.36□□□□□ -0.75
RNU4-29P-201ENST00000515943 SPDYE4A6NLX3 237 aa10.32□□□□□ -0.76
RNU4-29P-201ENST00000515943 REM2Q8IYK8 340 aaPredicted RBP10.28□□□□□ -0.76
RNU4-29P-201ENST00000515943 PABPN1Q86U42 306 aaKnown RBP eCLIP10.24□□□□□ -0.77
RNU4-29P-201ENST00000515943 FKBP8Q14318 412 aa10.22□□□□□ -0.77
RNU4-29P-201ENST00000515943 PITPNM1O00562 1244 aa10.19□□□□□ -0.78
RNU4-29P-201ENST00000515943 PROM2Q8N271 834 aa10.19□□□□□ -0.78
RNU4-29P-201ENST00000515943 SPDYE1Q8NFV5 336 aaPredicted RBP10.16□□□□□ -0.78
RNU4-29P-201ENST00000515943 CHRDL2Q6WN34 429 aa10.15□□□□□ -0.78
RNU4-29P-201ENST00000515943 CLEC11AQ9Y240 323 aa10.1□□□□□ -0.79
RNU4-29P-201ENST00000515943 STAG3Q9UJ98 1225 aa10.04□□□□□ -0.8
RNU4-29P-201ENST00000515943 SP7Q8TDD2 431 aaPredicted RBP10.02□□□□□ -0.81
RNU4-29P-201ENST00000515943 FXR2P51116 673 aaKnown RBP eCLIP10.01□□□□□ -0.81
RNU4-29P-201ENST00000515943 PIP4P2Q8N4L2 257 aa10□□□□□ -0.81
RNU4-29P-201ENST00000515943 PRR29P0C7W0 189 aa9.99□□□□□ -0.81
RNU4-29P-201ENST00000515943 PRKAR2AP13861 404 aaKnown RBP9.91□□□□□ -0.82
RNU4-29P-201ENST00000515943 CHADLQ6NUI6 762 aa9.88□□□□□ -0.83
RNU4-29P-201ENST00000515943 FBXO3Q9UK99 471 aa9.88□□□□□ -0.83
RNU4-29P-201ENST00000515943 CREBZFQ9NS37 354 aa9.87□□□□□ -0.83
RNU4-29P-201ENST00000515943 FARP1Q9Y4F1 1045 aaPredicted RBP9.79□□□□□ -0.84
RNU4-29P-201ENST00000515943 VASPP50552 380 aaPredicted RBP9.78□□□□□ -0.84
RNU4-29P-201ENST00000515943 MNX1P50219 401 aaPredicted RBP9.77□□□□□ -0.85
RNU4-29P-201ENST00000515943 MIER1Q8N108 512 aa9.77□□□□□ -0.85
RNU4-29P-201ENST00000515943 PLCD3Q8N3E9 789 aa9.76□□□□□ -0.85
RNU4-29P-201ENST00000515943 PLEKHG5O94827 1062 aa9.73□□□□□ -0.85
RNU4-29P-201ENST00000515943 HAX1O00165 279 aa9.7□□□□□ -0.86
RNU4-29P-201ENST00000515943 C19orf67A6NJJ6 358 aa9.69□□□□□ -0.86
RNU4-29P-201ENST00000515943 NPM1P06748 294 aaKnown RBP eCLIP9.68□□□□□ -0.86
RNU4-29P-201ENST00000515943 ZBTB47Q9UFB7 747 aaPredicted RBP9.67□□□□□ -0.86
RNU4-29P-201ENST00000515943 CD44P16070 742 aaKnown RBP9.62□□□□□ -0.87
RNU4-29P-201ENST00000515943 IFNLR1Q8IU57 520 aaPredicted RBP9.62□□□□□ -0.87
RNU4-29P-201ENST00000515943 EVX2Q03828 476 aa9.61□□□□□ -0.87
RNU4-29P-201ENST00000515943 NUBP1P53384 320 aa9.59□□□□□ -0.87
RNU4-29P-201ENST00000515943 KLHL34Q8N239 644 aa9.59□□□□□ -0.87
RNU4-29P-201ENST00000515943 RASEFQ8IZ41 740 aa9.57□□□□□ -0.88
RNU4-29P-201ENST00000515943 PAK3O75914 559 aaPredicted RBP9.54□□□□□ -0.88
RNU4-29P-201ENST00000515943 ZRANB1Q9UGI0 708 aa9.53□□□□□ -0.88
RNU4-29P-201ENST00000515943 ZNF579Q8NAF0 562 aaKnown RBP9.52□□□□□ -0.89
RNU4-29P-201ENST00000515943 SPOCK2Q92563 424 aa9.52□□□□□ -0.89
RNU4-29P-201ENST00000515943 TSPYL2Q9H2G4 693 aaPredicted RBP9.51□□□□□ -0.89
RNU4-29P-201ENST00000515943 FAM212AQ96EL1 285 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms