RNA–Protein interactions for RNA: ENST00000515063.1

CAST-242, Transcript of calpastatin, humanhuman

TSL 1 (best)

Gene CAST, Length 654 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAST-242ENST00000515063 AEBP2Q6ZN18 517 aaPredicted RBP20.02■□□□□ 0.8
CAST-242ENST00000515063 CHIC1Q5VXU3 224 aa19.49■□□□□ 0.71
CAST-242ENST00000515063 SENP3Q9H4L4 574 aaPredicted RBP17.18■□□□□ 0.34
CAST-242ENST00000515063 PHF23Q9BUL5 403 aaPredicted RBP17.02■□□□□ 0.32
CAST-242ENST00000515063 FOXD1Q16676 465 aa15.86■□□□□ 0.13
CAST-242ENST00000515063 PLPPR3Q6T4P5 718 aa15.82■□□□□ 0.12
CAST-242ENST00000515063 ADRA2BP18089 450 aa15.07■□□□□ 0
CAST-242ENST00000515063 PPP6R1Q9UPN7 881 aa15.07■□□□□ 0
CAST-242ENST00000515063 PIAS4Q8N2W9 510 aaPredicted RBP14.98□□□□□ -0.01
CAST-242ENST00000515063 MSH5O43196 834 aa14.82□□□□□ -0.04
CAST-242ENST00000515063 SCAF1Q9H7N4 1312 aaKnown RBP13.98□□□□□ -0.17
CAST-242ENST00000515063 PPP4R3CPQ6ZMV5 832 aa13.86□□□□□ -0.19
CAST-242ENST00000515063 MAPK8IP2Q13387 824 aaPredicted RBP13.69□□□□□ -0.22
CAST-242ENST00000515063 POTEDQ86YR6 584 aa13.68□□□□□ -0.22
CAST-242ENST00000515063 DMRT2Q9Y5R5 561 aa13.64□□□□□ -0.23
CAST-242ENST00000515063 NCBP3Q53F19 620 aaKnown RBP13.56□□□□□ -0.24
CAST-242ENST00000515063 CNKSR2Q8WXI2 1034 aa13.55□□□□□ -0.24
CAST-242ENST00000515063 RNF216Q9NWF9 866 aaPredicted RBP13.33□□□□□ -0.28
CAST-242ENST00000515063 KCNA4P22459 653 aa13.3□□□□□ -0.28
CAST-242ENST00000515063 HOXD11P31277 338 aaPredicted RBP13.29□□□□□ -0.28
CAST-242ENST00000515063 NPM3O75607 178 aaKnown RBP13.23□□□□□ -0.29
CAST-242ENST00000515063 DCAF8L1A6NGE4 600 aa13.08□□□□□ -0.32
CAST-242ENST00000515063 DNAJC5BQ9UF47 199 aa12.95□□□□□ -0.34
CAST-242ENST00000515063 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.7□□□□□ -0.389e-7■■■■□ 19.7
CAST-242ENST00000515063 SLC4A1APQ9BWU0 796 aaKnown RBP12.7□□□□□ -0.38
CAST-242ENST00000515063 RNF39Q9H2S5 420 aa12.61□□□□□ -0.39
CAST-242ENST00000515063 C1QBPQ07021 282 aaKnown RBP12.51□□□□□ -0.41
CAST-242ENST00000515063 SLC4A2P04920 1241 aa12.49□□□□□ -0.41
CAST-242ENST00000515063 CACNB1Q02641 598 aaPredicted RBP12.43□□□□□ -0.42
CAST-242ENST00000515063 U3KPZ7 1027 aaPredicted RBP12.41□□□□□ -0.42
CAST-242ENST00000515063 FOXD4L1Q9NU39 408 aa12.37□□□□□ -0.43
CAST-242ENST00000515063 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.36□□□□□ -0.43
CAST-242ENST00000515063 HNRNPUL2Q1KMD3 747 aaKnown RBP12.36□□□□□ -0.43
CAST-242ENST00000515063 MYCNP04198 464 aaPredicted RBP12.31□□□□□ -0.44
CAST-242ENST00000515063 APLP2Q06481 763 aa12.31□□□□□ -0.44
CAST-242ENST00000515063 SAMD1Q6SPF0 538 aaPredicted RBP12.26□□□□□ -0.45
CAST-242ENST00000515063 ZBTB22O15209 634 aa12.18□□□□□ -0.46
CAST-242ENST00000515063 CAPN15O75808 1086 aa12.13□□□□□ -0.47
CAST-242ENST00000515063 EHMT2Q96KQ7 1210 aa12.1□□□□□ -0.47
CAST-242ENST00000515063 SPINK5Q9NQ38 1064 aaPredicted RBP12.08□□□□□ -0.48
CAST-242ENST00000515063 ZNF219Q9P2Y4 722 aaPredicted RBP12.08□□□□□ -0.48
CAST-242ENST00000515063 TRHP20396 242 aaPredicted RBP12.01□□□□□ -0.49
CAST-242ENST00000515063 CSRNP3Q8WYN3 585 aa12.01□□□□□ -0.49
CAST-242ENST00000515063 ATXN8OSP0DMR3 200 aa12□□□□□ -0.49
CAST-242ENST00000515063 DSG3P32926 999 aa11.92□□□□□ -0.5
CAST-242ENST00000515063 ATF5Q9Y2D1 282 aaPredicted RBP11.84□□□□□ -0.51
CAST-242ENST00000515063 ABCB7O75027 752 aa11.83□□□□□ -0.52
CAST-242ENST00000515063 POLA2Q14181 598 aa11.77□□□□□ -0.53
CAST-242ENST00000515063 ZBTB12Q9Y330 459 aaPredicted RBP11.7□□□□□ -0.54
CAST-242ENST00000515063 FBLN2P98095 1184 aa11.55□□□□□ -0.56
CAST-242ENST00000515063 RBM42Q9BTD8 480 aaKnown RBP11.5□□□□□ -0.57
CAST-242ENST00000515063 OSCARQ8IYS5 282 aa11.37□□□□□ -0.59
CAST-242ENST00000515063 MKRN4PQ13434 485 aaPredicted RBP11.34□□□□□ -0.59
CAST-242ENST00000515063 SPDYE2BA6NHP3 402 aa11.3□□□□□ -0.6
CAST-242ENST00000515063 SPDYE6P0CI01 402 aa11.3□□□□□ -0.6
CAST-242ENST00000515063 SPDYE2Q495Y8 402 aa11.3□□□□□ -0.6
CAST-242ENST00000515063 AKT1S1Q96B36 256 aa11.26□□□□□ -0.61
CAST-242ENST00000515063 ZNF692Q9BU19 519 aaPredicted RBP11.2□□□□□ -0.62
CAST-242ENST00000515063 SSUH2Q9Y2M2 353 aa11.14□□□□□ -0.63
CAST-242ENST00000515063 SPDYE4A6NLX3 237 aa11.1□□□□□ -0.63
CAST-242ENST00000515063 REM2Q8IYK8 340 aaPredicted RBP11.1□□□□□ -0.63
CAST-242ENST00000515063 PABPN1Q86U42 306 aaKnown RBP eCLIP11.03□□□□□ -0.64
CAST-242ENST00000515063 SPDYE1Q8NFV5 336 aaPredicted RBP11.02□□□□□ -0.65
CAST-242ENST00000515063 CHRDL2Q6WN34 429 aa11□□□□□ -0.65
CAST-242ENST00000515063 PITPNM1O00562 1244 aa10.97□□□□□ -0.65
CAST-242ENST00000515063 CLEC11AQ9Y240 323 aa10.93□□□□□ -0.66
CAST-242ENST00000515063 FKBP8Q14318 412 aa10.92□□□□□ -0.66
CAST-242ENST00000515063 STAG3Q9UJ98 1225 aa10.91□□□□□ -0.66
CAST-242ENST00000515063 PROM2Q8N271 834 aa10.86□□□□□ -0.67
CAST-242ENST00000515063 POTEHQ6S545 545 aa10.84□□□□□ -0.67
CAST-242ENST00000515063 PRR29P0C7W0 189 aa10.83□□□□□ -0.68
CAST-242ENST00000515063 FXR2P51116 673 aaKnown RBP eCLIP10.8□□□□□ -0.683e-6■■■■□ 23.4
CAST-242ENST00000515063 PIP4P2Q8N4L2 257 aa10.79□□□□□ -0.68
CAST-242ENST00000515063 PRKAR2AP13861 404 aaKnown RBP10.71□□□□□ -0.69
CAST-242ENST00000515063 FBXO3Q9UK99 471 aa10.7□□□□□ -0.7
CAST-242ENST00000515063 PLEKHG5O94827 1062 aa10.64□□□□□ -0.71
CAST-242ENST00000515063 CHADLQ6NUI6 762 aa10.61□□□□□ -0.71
CAST-242ENST00000515063 CREBZFQ9NS37 354 aa10.58□□□□□ -0.72
CAST-242ENST00000515063 MIER1Q8N108 512 aa10.56□□□□□ -0.72
CAST-242ENST00000515063 PLCD3Q8N3E9 789 aa10.55□□□□□ -0.72
CAST-242ENST00000515063 FARP1Q9Y4F1 1045 aaPredicted RBP10.55□□□□□ -0.72
CAST-242ENST00000515063 HAX1O00165 279 aa10.53□□□□□ -0.72
CAST-242ENST00000515063 NPM1P06748 294 aaKnown RBP eCLIP10.53□□□□□ -0.72
CAST-242ENST00000515063 ZBTB47Q9UFB7 747 aaPredicted RBP10.53□□□□□ -0.72
CAST-242ENST00000515063 VASPP50552 380 aaPredicted RBP10.47□□□□□ -0.73
CAST-242ENST00000515063 C19orf67A6NJJ6 358 aa10.44□□□□□ -0.74
CAST-242ENST00000515063 MNX1P50219 401 aaPredicted RBP10.43□□□□□ -0.74
CAST-242ENST00000515063 PAK3O75914 559 aaPredicted RBP10.42□□□□□ -0.74
CAST-242ENST00000515063 CD44P16070 742 aaKnown RBP10.4□□□□□ -0.74
CAST-242ENST00000515063 KLHL34Q8N239 644 aa10.36□□□□□ -0.75
CAST-242ENST00000515063 SP7Q8TDD2 431 aaPredicted RBP10.36□□□□□ -0.75
CAST-242ENST00000515063 ZRANB1Q9UGI0 708 aa10.32□□□□□ -0.76
CAST-242ENST00000515063 CLCN6P51797 869 aa10.31□□□□□ -0.76
CAST-242ENST00000515063 EVX2Q03828 476 aa10.29□□□□□ -0.76
CAST-242ENST00000515063 ZNF579Q8NAF0 562 aaKnown RBP10.27□□□□□ -0.77
CAST-242ENST00000515063 FAM212AQ96EL1 285 aa10.27□□□□□ -0.77
CAST-242ENST00000515063 NUBP1P53384 320 aa10.25□□□□□ -0.77
CAST-242ENST00000515063 TSPYL2Q9H2G4 693 aaPredicted RBP10.25□□□□□ -0.77
CAST-242ENST00000515063 IFNLR1Q8IU57 520 aaPredicted RBP10.24□□□□□ -0.77
CAST-242ENST00000515063 RASEFQ8IZ41 740 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms