RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 AEBP2Q6ZN18 517 aaPredicted RBP20.34■□□□□ 0.85
TOPBP1-204ENST00000505804 CHIC1Q5VXU3 224 aa20.01■□□□□ 0.79
TOPBP1-204ENST00000505804 PHF23Q9BUL5 403 aaPredicted RBP17.65■□□□□ 0.42
TOPBP1-204ENST00000505804 SENP3Q9H4L4 574 aaPredicted RBP17.18■□□□□ 0.34
TOPBP1-204ENST00000505804 PLPPR3Q6T4P5 718 aa16.32■□□□□ 0.2
TOPBP1-204ENST00000505804 FOXD1Q16676 465 aa15.96■□□□□ 0.15
TOPBP1-204ENST00000505804 PPP6R1Q9UPN7 881 aa15.54■□□□□ 0.08
TOPBP1-204ENST00000505804 ADRA2BP18089 450 aa15.53■□□□□ 0.08
TOPBP1-204ENST00000505804 PIAS4Q8N2W9 510 aaPredicted RBP15.08■□□□□ 0
TOPBP1-204ENST00000505804 MSH5O43196 834 aa14.6□□□□□ -0.07
TOPBP1-204ENST00000505804 PPP4R3CPQ6ZMV5 832 aa14.43□□□□□ -0.1
TOPBP1-204ENST00000505804 KCNA4P22459 653 aa14.31□□□□□ -0.12
TOPBP1-204ENST00000505804 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.14
TOPBP1-204ENST00000505804 NCBP3Q53F19 620 aaKnown RBP14.07□□□□□ -0.16
TOPBP1-204ENST00000505804 MAPK8IP2Q13387 824 aaPredicted RBP14.06□□□□□ -0.16
TOPBP1-204ENST00000505804 CNKSR2Q8WXI2 1034 aa13.96□□□□□ -0.17
TOPBP1-204ENST00000505804 NPM3O75607 178 aaKnown RBP13.9□□□□□ -0.18
TOPBP1-204ENST00000505804 DMRT2Q9Y5R5 561 aa13.75□□□□□ -0.21
TOPBP1-204ENST00000505804 SLC4A1APQ9BWU0 796 aaKnown RBP13.65□□□□□ -0.22
TOPBP1-204ENST00000505804 RNF216Q9NWF9 866 aaPredicted RBP13.64□□□□□ -0.23
TOPBP1-204ENST00000505804 HOXD11P31277 338 aaPredicted RBP13.53□□□□□ -0.24
TOPBP1-204ENST00000505804 EHMT2Q96KQ7 1210 aa13.5□□□□□ -0.25
TOPBP1-204ENST00000505804 DNAJC5BQ9UF47 199 aa13.39□□□□□ -0.27
TOPBP1-204ENST00000505804 CSRNP3Q8WYN3 585 aa13.26□□□□□ -0.29
TOPBP1-204ENST00000505804 DCAF8L1A6NGE4 600 aa13.2□□□□□ -0.3
TOPBP1-204ENST00000505804 ZBTB22O15209 634 aa13.17□□□□□ -0.3
TOPBP1-204ENST00000505804 SLC4A2P04920 1241 aa13.08□□□□□ -0.32
TOPBP1-204ENST00000505804 FOXD4L1Q9NU39 408 aa13.08□□□□□ -0.32
TOPBP1-204ENST00000505804 POTEDQ86YR6 584 aa13.02□□□□□ -0.33
TOPBP1-204ENST00000505804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.93□□□□□ -0.344e-8■■■■□ 25.6
TOPBP1-204ENST00000505804 MYCNP04198 464 aaPredicted RBP12.8□□□□□ -0.36
TOPBP1-204ENST00000505804 U3KPZ7 1027 aaPredicted RBP12.72□□□□□ -0.37
TOPBP1-204ENST00000505804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.59□□□□□ -0.39
TOPBP1-204ENST00000505804 ATXN8OSP0DMR3 200 aa12.59□□□□□ -0.39
TOPBP1-204ENST00000505804 HNRNPUL2Q1KMD3 747 aaKnown RBP12.59□□□□□ -0.39
TOPBP1-204ENST00000505804 SAMD1Q6SPF0 538 aaPredicted RBP12.56□□□□□ -0.4
TOPBP1-204ENST00000505804 RNF39Q9H2S5 420 aa12.55□□□□□ -0.4
TOPBP1-204ENST00000505804 ATF5Q9Y2D1 282 aaPredicted RBP12.51□□□□□ -0.41
TOPBP1-204ENST00000505804 APLP2Q06481 763 aa12.4□□□□□ -0.42
TOPBP1-204ENST00000505804 C1QBPQ07021 282 aaKnown RBP12.4□□□□□ -0.42
TOPBP1-204ENST00000505804 SPINK5Q9NQ38 1064 aaPredicted RBP12.35□□□□□ -0.43
TOPBP1-204ENST00000505804 CAPN15O75808 1086 aa12.28□□□□□ -0.44
TOPBP1-204ENST00000505804 TRHP20396 242 aaPredicted RBP12.28□□□□□ -0.44
TOPBP1-204ENST00000505804 ZNF219Q9P2Y4 722 aaPredicted RBP12.27□□□□□ -0.45
TOPBP1-204ENST00000505804 CACNB1Q02641 598 aaPredicted RBP12.12□□□□□ -0.47
TOPBP1-204ENST00000505804 POLA2Q14181 598 aa12.12□□□□□ -0.47
TOPBP1-204ENST00000505804 ABCB7O75027 752 aa12.07□□□□□ -0.48
TOPBP1-204ENST00000505804 DSG3P32926 999 aa12.02□□□□□ -0.49
TOPBP1-204ENST00000505804 FKBP8Q14318 412 aa11.97□□□□□ -0.49
TOPBP1-204ENST00000505804 MKRN4PQ13434 485 aaPredicted RBP11.95□□□□□ -0.5
TOPBP1-204ENST00000505804 FBLN2P98095 1184 aa11.92□□□□□ -0.5
TOPBP1-204ENST00000505804 ZBTB12Q9Y330 459 aaPredicted RBP11.86□□□□□ -0.51
TOPBP1-204ENST00000505804 SPDYE4A6NLX3 237 aa11.76□□□□□ -0.53
TOPBP1-204ENST00000505804 OSCARQ8IYS5 282 aa11.68□□□□□ -0.54
TOPBP1-204ENST00000505804 ZNF692Q9BU19 519 aaPredicted RBP11.61□□□□□ -0.55
TOPBP1-204ENST00000505804 SPDYE2BA6NHP3 402 aa11.57□□□□□ -0.56
TOPBP1-204ENST00000505804 SPDYE6P0CI01 402 aa11.57□□□□□ -0.56
TOPBP1-204ENST00000505804 SPDYE2Q495Y8 402 aa11.57□□□□□ -0.56
TOPBP1-204ENST00000505804 PROM2Q8N271 834 aa11.56□□□□□ -0.56
TOPBP1-204ENST00000505804 SSUH2Q9Y2M2 353 aa11.51□□□□□ -0.57
TOPBP1-204ENST00000505804 PABPN1Q86U42 306 aaKnown RBP eCLIP11.45□□□□□ -0.58
TOPBP1-204ENST00000505804 FBXO3Q9UK99 471 aa11.45□□□□□ -0.58
TOPBP1-204ENST00000505804 RBM42Q9BTD8 480 aaKnown RBP11.4□□□□□ -0.58
TOPBP1-204ENST00000505804 AKT1S1Q96B36 256 aa11.33□□□□□ -0.6
TOPBP1-204ENST00000505804 VASPP50552 380 aaPredicted RBP11.29□□□□□ -0.6
TOPBP1-204ENST00000505804 STAG3Q9UJ98 1225 aa11.26□□□□□ -0.61
TOPBP1-204ENST00000505804 REM2Q8IYK8 340 aaPredicted RBP11.24□□□□□ -0.61
TOPBP1-204ENST00000505804 SPDYE1Q8NFV5 336 aaPredicted RBP11.2□□□□□ -0.62
TOPBP1-204ENST00000505804 RTN4Q9NQC3 1192 aaKnown RBP11.2□□□□□ -0.62
TOPBP1-204ENST00000505804 IFNLR1Q8IU57 520 aaPredicted RBP11.19□□□□□ -0.62
TOPBP1-204ENST00000505804 CLEC11AQ9Y240 323 aa11.19□□□□□ -0.62
TOPBP1-204ENST00000505804 AMER1Q5JTC6 1135 aaPredicted RBP11.18□□□□□ -0.62
TOPBP1-204ENST00000505804 MIER1Q8N108 512 aa11.16□□□□□ -0.62
TOPBP1-204ENST00000505804 PLCD3Q8N3E9 789 aa11.15□□□□□ -0.62
TOPBP1-204ENST00000505804 PITPNM1O00562 1244 aa11.1□□□□□ -0.63
TOPBP1-204ENST00000505804 PRR29P0C7W0 189 aa11.1□□□□□ -0.63
TOPBP1-204ENST00000505804 KLHL34Q8N239 644 aa11.1□□□□□ -0.63
TOPBP1-204ENST00000505804 PLEKHG5O94827 1062 aa11.04□□□□□ -0.64
TOPBP1-204ENST00000505804 SPOCK2Q92563 424 aa11□□□□□ -0.65
TOPBP1-204ENST00000505804 CREBZFQ9NS37 354 aa10.99□□□□□ -0.65
TOPBP1-204ENST00000505804 ZBTB47Q9UFB7 747 aaPredicted RBP10.96□□□□□ -0.65
TOPBP1-204ENST00000505804 CHADLQ6NUI6 762 aa10.91□□□□□ -0.66
TOPBP1-204ENST00000505804 MNX1P50219 401 aaPredicted RBP10.9□□□□□ -0.66
TOPBP1-204ENST00000505804 CHRDL2Q6WN34 429 aa10.89□□□□□ -0.67
TOPBP1-204ENST00000505804 PKD2Q13563 968 aa10.88□□□□□ -0.67
TOPBP1-204ENST00000505804 FXR2P51116 673 aaKnown RBP eCLIP10.86□□□□□ -0.67
TOPBP1-204ENST00000505804 PRKAR2AP13861 404 aaKnown RBP10.84□□□□□ -0.67
TOPBP1-204ENST00000505804 NUBP1P53384 320 aa10.84□□□□□ -0.67
TOPBP1-204ENST00000505804 CIZ1Q9ULV3 898 aaPredicted RBP10.83□□□□□ -0.68
TOPBP1-204ENST00000505804 PIP4P2Q8N4L2 257 aa10.8□□□□□ -0.68
TOPBP1-204ENST00000505804 NPM1P06748 294 aaKnown RBP eCLIP10.79□□□□□ -0.68
TOPBP1-204ENST00000505804 FARP1Q9Y4F1 1045 aaPredicted RBP10.79□□□□□ -0.68
TOPBP1-204ENST00000505804 ECM2O94769 699 aaPredicted RBP10.77□□□□□ -0.69
TOPBP1-204ENST00000505804 DCAF8Q5TAQ9 597 aa10.77□□□□□ -0.69
TOPBP1-204ENST00000505804 RASEFQ8IZ41 740 aa10.75□□□□□ -0.69
TOPBP1-204ENST00000505804 GSE1Q14687 1217 aa10.74□□□□□ -0.69
TOPBP1-204ENST00000505804 FAM212AQ96EL1 285 aa10.72□□□□□ -0.69
TOPBP1-204ENST00000505804 DCAF8L2P0C7V8 631 aa10.7□□□□□ -0.7
TOPBP1-204ENST00000505804 RGL2O15211 777 aa10.67□□□□□ -0.7
TOPBP1-204ENST00000505804 TSPYL2Q9H2G4 693 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 186 ms