RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 AEBP2Q6ZN18 517 aaPredicted RBP21.12■□□□□ 0.97
HMGB3P17-201ENST00000504195 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
HMGB3P17-201ENST00000504195 SENP3Q9H4L4 574 aaPredicted RBP18.25■□□□□ 0.51
HMGB3P17-201ENST00000504195 PHF23Q9BUL5 403 aaPredicted RBP17.87■□□□□ 0.45
HMGB3P17-201ENST00000504195 FOXD1Q16676 465 aa17■□□□□ 0.31
HMGB3P17-201ENST00000504195 POTEDQ86YR6 584 aa16.83■□□□□ 0.28
HMGB3P17-201ENST00000504195 MSH5O43196 834 aa16.26■□□□□ 0.19
HMGB3P17-201ENST00000504195 PIAS4Q8N2W9 510 aaPredicted RBP15.83■□□□□ 0.12
HMGB3P17-201ENST00000504195 PLPPR3Q6T4P5 718 aa15.39■□□□□ 0.05
HMGB3P17-201ENST00000504195 PPP6R1Q9UPN7 881 aa15.36■□□□□ 0.05
HMGB3P17-201ENST00000504195 ADRA2BP18089 450 aa15.33■□□□□ 0.04
HMGB3P17-201ENST00000504195 CACNB1Q02641 598 aaPredicted RBP14.34□□□□□ -0.11
HMGB3P17-201ENST00000504195 DMRT2Q9Y5R5 561 aa14.32□□□□□ -0.12
HMGB3P17-201ENST00000504195 MAPK8IP2Q13387 824 aaPredicted RBP14.24□□□□□ -0.13
HMGB3P17-201ENST00000504195 SCAF1Q9H7N4 1312 aaKnown RBP14.16□□□□□ -0.14
HMGB3P17-201ENST00000504195 DCAF8L1A6NGE4 600 aa13.91□□□□□ -0.18
HMGB3P17-201ENST00000504195 RNF39Q9H2S5 420 aa13.73□□□□□ -0.21
HMGB3P17-201ENST00000504195 C1QBPQ07021 282 aaKnown RBP13.55□□□□□ -0.24
HMGB3P17-201ENST00000504195 HOXD11P31277 338 aaPredicted RBP13.53□□□□□ -0.24
HMGB3P17-201ENST00000504195 PPP4R3CPQ6ZMV5 832 aa13.37□□□□□ -0.27
HMGB3P17-201ENST00000504195 RNF216Q9NWF9 866 aaPredicted RBP13.31□□□□□ -0.28
HMGB3P17-201ENST00000504195 CNKSR2Q8WXI2 1034 aa13.29□□□□□ -0.28
HMGB3P17-201ENST00000504195 DNAJC5BQ9UF47 199 aa13.2□□□□□ -0.3
HMGB3P17-201ENST00000504195 POTEHQ6S545 545 aa13.11□□□□□ -0.31
HMGB3P17-201ENST00000504195 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.01□□□□□ -0.33
HMGB3P17-201ENST00000504195 NCBP3Q53F19 620 aaKnown RBP12.76□□□□□ -0.37
HMGB3P17-201ENST00000504195 CAPN15O75808 1086 aa12.69□□□□□ -0.38
HMGB3P17-201ENST00000504195 DSG3P32926 999 aa12.65□□□□□ -0.38
HMGB3P17-201ENST00000504195 SPINK5Q9NQ38 1064 aaPredicted RBP12.57□□□□□ -0.4
HMGB3P17-201ENST00000504195 U3KPZ7 1027 aaPredicted RBP12.57□□□□□ -0.4
HMGB3P17-201ENST00000504195 NPM3O75607 178 aaKnown RBP12.47□□□□□ -0.41
HMGB3P17-201ENST00000504195 APLP2Q06481 763 aa12.33□□□□□ -0.44
HMGB3P17-201ENST00000504195 TRHP20396 242 aaPredicted RBP12.32□□□□□ -0.44
HMGB3P17-201ENST00000504195 ABCB7O75027 752 aa12.3□□□□□ -0.44
HMGB3P17-201ENST00000504195 ZNF219Q9P2Y4 722 aaPredicted RBP12.29□□□□□ -0.44
HMGB3P17-201ENST00000504195 RBM42Q9BTD8 480 aaKnown RBP12.21□□□□□ -0.45
HMGB3P17-201ENST00000504195 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.12□□□□□ -0.47
HMGB3P17-201ENST00000504195 HNRNPUL2Q1KMD3 747 aaKnown RBP12.12□□□□□ -0.47
HMGB3P17-201ENST00000504195 CHRDL2Q6WN34 429 aa12.12□□□□□ -0.47
HMGB3P17-201ENST00000504195 SLC4A2P04920 1241 aa12.01□□□□□ -0.49
HMGB3P17-201ENST00000504195 SP7Q8TDD2 431 aaPredicted RBP12□□□□□ -0.49
HMGB3P17-201ENST00000504195 SAMD1Q6SPF0 538 aaPredicted RBP11.99□□□□□ -0.49
HMGB3P17-201ENST00000504195 POLA2Q14181 598 aa11.8□□□□□ -0.52
HMGB3P17-201ENST00000504195 AKT1S1Q96B36 256 aa11.74□□□□□ -0.53
HMGB3P17-201ENST00000504195 HAX1O00165 279 aa11.7□□□□□ -0.54
HMGB3P17-201ENST00000504195 KCNA4P22459 653 aa11.67□□□□□ -0.54
HMGB3P17-201ENST00000504195 PIP4P2Q8N4L2 257 aa11.67□□□□□ -0.54
HMGB3P17-201ENST00000504195 MYCNP04198 464 aaPredicted RBP11.62□□□□□ -0.55
HMGB3P17-201ENST00000504195 REM2Q8IYK8 340 aaPredicted RBP11.6□□□□□ -0.55
HMGB3P17-201ENST00000504195 ZBTB12Q9Y330 459 aaPredicted RBP11.6□□□□□ -0.55
HMGB3P17-201ENST00000504195 PITPNM1O00562 1244 aa11.49□□□□□ -0.57
HMGB3P17-201ENST00000504195 FXR2P51116 673 aaKnown RBP eCLIP11.48□□□□□ -0.57
HMGB3P17-201ENST00000504195 OSCARQ8IYS5 282 aa11.46□□□□□ -0.57
HMGB3P17-201ENST00000504195 EVX2Q03828 476 aa11.35□□□□□ -0.59
HMGB3P17-201ENST00000504195 ATF5Q9Y2D1 282 aaPredicted RBP11.28□□□□□ -0.6
HMGB3P17-201ENST00000504195 LHX8Q68G74 356 aa11.25□□□□□ -0.61
HMGB3P17-201ENST00000504195 PRKAR2AP13861 404 aaKnown RBP11.22□□□□□ -0.61
HMGB3P17-201ENST00000504195 CLEC11AQ9Y240 323 aa11.16□□□□□ -0.62
HMGB3P17-201ENST00000504195 FOXD4L1Q9NU39 408 aa11.15□□□□□ -0.62
HMGB3P17-201ENST00000504195 C19orf67A6NJJ6 358 aa11.14□□□□□ -0.63
HMGB3P17-201ENST00000504195 GABBR2O75899 941 aa11.14□□□□□ -0.63
HMGB3P17-201ENST00000504195 SPDYE2BA6NHP3 402 aa11.13□□□□□ -0.63
HMGB3P17-201ENST00000504195 SPDYE6P0CI01 402 aa11.13□□□□□ -0.63
HMGB3P17-201ENST00000504195 SPDYE2Q495Y8 402 aa11.13□□□□□ -0.63
HMGB3P17-201ENST00000504195 PLSCR2Q9NRY7 297 aa11.13□□□□□ -0.63
HMGB3P17-201ENST00000504195 SPDYE1Q8NFV5 336 aaPredicted RBP11.12□□□□□ -0.63
HMGB3P17-201ENST00000504195 FBLN2P98095 1184 aa11.06□□□□□ -0.64
HMGB3P17-201ENST00000504195 SLC4A1APQ9BWU0 796 aaKnown RBP10.96□□□□□ -0.65
HMGB3P17-201ENST00000504195 CHADLQ6NUI6 762 aa10.93□□□□□ -0.66
HMGB3P17-201ENST00000504195 ZNF692Q9BU19 519 aaPredicted RBP10.91□□□□□ -0.66
HMGB3P17-201ENST00000504195 PRR29P0C7W0 189 aa10.87□□□□□ -0.67
HMGB3P17-201ENST00000504195 SSUH2Q9Y2M2 353 aa10.86□□□□□ -0.67
HMGB3P17-201ENST00000504195 ATXN8OSP0DMR3 200 aa10.85□□□□□ -0.67
HMGB3P17-201ENST00000504195 CD44P16070 742 aaKnown RBP10.84□□□□□ -0.67
HMGB3P17-201ENST00000504195 POTEIP0CG38 1075 aa10.83□□□□□ -0.68
HMGB3P17-201ENST00000504195 CLCN6P51797 869 aa10.83□□□□□ -0.68
HMGB3P17-201ENST00000504195 DCBLD2Q96PD2 775 aa10.82□□□□□ -0.68
HMGB3P17-201ENST00000504195 MKRN4PQ13434 485 aaPredicted RBP10.73□□□□□ -0.69
HMGB3P17-201ENST00000504195 PABPN1Q86U42 306 aaKnown RBP eCLIP10.72□□□□□ -0.69
HMGB3P17-201ENST00000504195 FARP1Q9Y4F1 1045 aaPredicted RBP10.71□□□□□ -0.69
HMGB3P17-201ENST00000504195 ZBTB22O15209 634 aa10.66□□□□□ -0.7
HMGB3P17-201ENST00000504195 POTEMA6NI47 508 aa10.65□□□□□ -0.7
HMGB3P17-201ENST00000504195 ZNF579Q8NAF0 562 aaKnown RBP10.61□□□□□ -0.71
HMGB3P17-201ENST00000504195 ZRANB1Q9UGI0 708 aa10.6□□□□□ -0.71
HMGB3P17-201ENST00000504195 POTEGQ6S5H5 508 aa10.59□□□□□ -0.71
HMGB3P17-201ENST00000504195 OTUD5Q96G74 571 aa10.59□□□□□ -0.71
HMGB3P17-201ENST00000504195 PCDH10Q9P2E7 1040 aa10.52□□□□□ -0.73
HMGB3P17-201ENST00000504195 GALR2O43603 387 aaPredicted RBP10.51□□□□□ -0.73
HMGB3P17-201ENST00000504195 PAK3O75914 559 aaPredicted RBP10.47□□□□□ -0.73
HMGB3P17-201ENST00000504195 POTEB2H3BUK9 544 aa10.46□□□□□ -0.73
HMGB3P17-201ENST00000504195 CREBZFQ9NS37 354 aa10.36□□□□□ -0.75
HMGB3P17-201ENST00000504195 MAMSTRQ6ZN01 415 aa10.35□□□□□ -0.75
HMGB3P17-201ENST00000504195 PHF12Q96QT6 1004 aa10.35□□□□□ -0.75
HMGB3P17-201ENST00000504195 STAG3Q9UJ98 1225 aa10.34□□□□□ -0.75
HMGB3P17-201ENST00000504195 METRNQ9UJH8 293 aa10.34□□□□□ -0.75
HMGB3P17-201ENST00000504195 PELP1Q8IZL8 1130 aaKnown RBP10.3□□□□□ -0.76
HMGB3P17-201ENST00000504195 SLC39A7Q92504 469 aa10.3□□□□□ -0.76
HMGB3P17-201ENST00000504195 C7P10643 843 aa10.28□□□□□ -0.76
HMGB3P17-201ENST00000504195 FAM163AQ96GL9 167 aaPredicted RBP10.28□□□□□ -0.76
HMGB3P17-201ENST00000504195 SCUBE2Q9NQ36 999 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms