RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 NISCHQ9Y2I1 1504 aa28.5■■■□□ 2.15
PCDHA1-203ENST00000504120 DCAF8L2P0C7V8 631 aa28.5■■■□□ 2.15
PCDHA1-203ENST00000504120 SUPT5HO00267 1087 aaKnown RBP27.19■■□□□ 1.94
PCDHA1-203ENST00000504120 SHROOM4Q9ULL8 1493 aa26.65■■□□□ 1.86
PCDHA1-203ENST00000504120 EHMT2Q96KQ7 1210 aa26.17■■□□□ 1.78
PCDHA1-203ENST00000504120 PELP1Q8IZL8 1130 aaKnown RBP25.98■■□□□ 1.75
PCDHA1-203ENST00000504120 APLP2Q06481 763 aa25.96■■□□□ 1.75
PCDHA1-203ENST00000504120 FAM9AQ8IZU1 332 aaPredicted RBP25.62■■□□□ 1.69
PCDHA1-203ENST00000504120 PCGF6Q9BYE7 350 aa25.45■■□□□ 1.67
PCDHA1-203ENST00000504120 TTBK1Q5TCY1 1321 aaPredicted RBP25.33■■□□□ 1.65
PCDHA1-203ENST00000504120 TRIM41Q8WV44 630 aa25.27■■□□□ 1.64
PCDHA1-203ENST00000504120 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
PCDHA1-203ENST00000504120 CENPBP07199 599 aaPredicted RBP25.11■■□□□ 1.61
PCDHA1-203ENST00000504120 RANGAP1P46060 587 aaPredicted RBP25.07■■□□□ 1.6
PCDHA1-203ENST00000504120 CCER1Q8TC90 406 aaPredicted RBP25.07■■□□□ 1.6
PCDHA1-203ENST00000504120 UBTFP17480 764 aaKnown RBP24.94■■□□□ 1.58
PCDHA1-203ENST00000504120 ATP1B4Q9UN42 357 aaPredicted RBP24.91■■□□□ 1.58
PCDHA1-203ENST00000504120 ERICH6Q7L0X2 663 aa24.78■■□□□ 1.56
PCDHA1-203ENST00000504120 NEFLP07196 543 aa24.56■■□□□ 1.52
PCDHA1-203ENST00000504120 TRIM26Q12899 539 aaPredicted RBP24.49■■□□□ 1.51
PCDHA1-203ENST00000504120 YTHDC1Q96MU7 727 aaKnown RBP24.42■■□□□ 1.5
PCDHA1-203ENST00000504120 PPARGC1BQ86YN6 1023 aaKnown RBP24.4■■□□□ 1.5
PCDHA1-203ENST00000504120 HRCP23327 699 aa24.19■■□□□ 1.46
PCDHA1-203ENST00000504120 CHIC1Q5VXU3 224 aa24.17■■□□□ 1.46
PCDHA1-203ENST00000504120 MYT1Q01538 1121 aa24.16■■□□□ 1.46
PCDHA1-203ENST00000504120 ABCC9O60706 1549 aa24.11■■□□□ 1.45
PCDHA1-203ENST00000504120 LOC105371045A0A1W2PR82 267 aa24.1■■□□□ 1.45
PCDHA1-203ENST00000504120 ITGAEP38570 1179 aa24.09■■□□□ 1.45
PCDHA1-203ENST00000504120 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.04■■□□□ 1.44
PCDHA1-203ENST00000504120 HNRNPUL2Q1KMD3 747 aaKnown RBP24.04■■□□□ 1.44
PCDHA1-203ENST00000504120 MYT1LQ9UL68 1186 aa23.93■■□□□ 1.42
PCDHA1-203ENST00000504120 POLR3GLQ9BT43 218 aa23.89■■□□□ 1.42
PCDHA1-203ENST00000504120 DAXXQ9UER7 740 aaPredicted RBP23.81■■□□□ 1.4
PCDHA1-203ENST00000504120 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
PCDHA1-203ENST00000504120 ZCCHC6Q5VYS8 1495 aaKnown RBP23.69■■□□□ 1.38
PCDHA1-203ENST00000504120 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.38
PCDHA1-203ENST00000504120 DIEXFQ68CQ4 756 aaKnown RBP23.6■■□□□ 1.37
PCDHA1-203ENST00000504120 CNGB1Q14028 1251 aaPredicted RBP23.58■■□□□ 1.36
PCDHA1-203ENST00000504120 FAM50AQ14320 339 aaKnown RBP23.54■■□□□ 1.36
PCDHA1-203ENST00000504120 SLC4A1APQ9BWU0 796 aaKnown RBP23.43■■□□□ 1.34
PCDHA1-203ENST00000504120 TRIM52Q96A61 297 aa23.42■■□□□ 1.34
PCDHA1-203ENST00000504120 NEUROD1Q13562 356 aa23.32■■□□□ 1.32
PCDHA1-203ENST00000504120 SCRIBQ14160 1630 aa23.29■■□□□ 1.32
PCDHA1-203ENST00000504120 CLSPNQ9HAW4 1339 aa23.29■■□□□ 1.32
PCDHA1-203ENST00000504120 RTL5Q5HYW3 569 aaPredicted RBP23.25■■□□□ 1.31
PCDHA1-203ENST00000504120 ZNF316A6NFI3 1004 aaPredicted RBP23.25■■□□□ 1.31
PCDHA1-203ENST00000504120 ANP32CO43423 234 aa23.2■■□□□ 1.3
PCDHA1-203ENST00000504120 ZNF326Q5BKZ1 582 aaKnown RBP23.09■■□□□ 1.29
PCDHA1-203ENST00000504120 CSRNP3Q8WYN3 585 aa23.08■■□□□ 1.28
PCDHA1-203ENST00000504120 GTF3C3Q9Y5Q9 886 aa23.05■■□□□ 1.28
PCDHA1-203ENST00000504120 FBLN2P98095 1184 aa23.02■■□□□ 1.27
PCDHA1-203ENST00000504120 BCANQ96GW7 911 aa23■■□□□ 1.27
PCDHA1-203ENST00000504120 RB1CC1Q8TDY2 1594 aa22.99■■□□□ 1.27
PCDHA1-203ENST00000504120 CDK11AQ9UQ88 783 aaPredicted RBP22.98■■□□□ 1.27
PCDHA1-203ENST00000504120 NACADO15069 1562 aa22.91■■□□□ 1.26
PCDHA1-203ENST00000504120 P3H3Q8IVL6 736 aa22.9■■□□□ 1.26
PCDHA1-203ENST00000504120 ZBTB47Q9UFB7 747 aaPredicted RBP22.89■■□□□ 1.25
PCDHA1-203ENST00000504120 DCAF1Q9Y4B6 1507 aa22.81■■□□□ 1.24
PCDHA1-203ENST00000504120 CANXP27824 592 aaKnown RBP22.79■■□□□ 1.24
PCDHA1-203ENST00000504120 ACIN1Q9UKV3 1341 aaKnown RBP22.77■■□□□ 1.24
PCDHA1-203ENST00000504120 ARID3CA6NKF2 412 aa22.77■■□□□ 1.24
PCDHA1-203ENST00000504120 NEFMP07197 916 aa22.76■■□□□ 1.23
PCDHA1-203ENST00000504120 ZNF777Q9ULD5 760 aaPredicted RBP22.73■■□□□ 1.23
PCDHA1-203ENST00000504120 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
PCDHA1-203ENST00000504120 TONSLQ96HA7 1378 aa22.64■■□□□ 1.21
PCDHA1-203ENST00000504120 ANP32AP39687 249 aaKnown RBP22.59■■□□□ 1.21
PCDHA1-203ENST00000504120 SLC24A1O60721 1099 aa22.59■■□□□ 1.21
PCDHA1-203ENST00000504120 BCL11AQ9H165 835 aa22.49■■□□□ 1.19
PCDHA1-203ENST00000504120 FKBP8Q14318 412 aa22.44■■□□□ 1.18
PCDHA1-203ENST00000504120 HNRNPUQ00839 825 aaKnown RBP eCLIP22.43■■□□□ 1.18
PCDHA1-203ENST00000504120 ESF1Q9H501 851 aaKnown RBP22.43■■□□□ 1.18
PCDHA1-203ENST00000504120 DDX10Q13206 875 aaKnown RBP22.42■■□□□ 1.18
PCDHA1-203ENST00000504120 EEA1Q15075 1411 aa22.4■■□□□ 1.18
PCDHA1-203ENST00000504120 BAZ1AQ9NRL2 1556 aaPredicted RBP22.4■■□□□ 1.18
PCDHA1-203ENST00000504120 NPM2Q86SE8 214 aaKnown RBP22.38■■□□□ 1.17
PCDHA1-203ENST00000504120 CHGAP10645 457 aaKnown RBP22.38■■□□□ 1.17
PCDHA1-203ENST00000504120 BAZ1BQ9UIG0 1483 aaKnown RBP22.37■■□□□ 1.17
PCDHA1-203ENST00000504120 FAM9BQ8IZU0 186 aa22.36■■□□□ 1.17
PCDHA1-203ENST00000504120 STAG3Q9UJ98 1225 aa22.35■■□□□ 1.17
PCDHA1-203ENST00000504120 NPM1P06748 294 aaKnown RBP eCLIP22.34■■□□□ 1.17
PCDHA1-203ENST00000504120 CHIC2Q9UKJ5 165 aa22.33■■□□□ 1.17
PCDHA1-203ENST00000504120 MTUS2Q5JR59 1369 aa22.28■■□□□ 1.16
PCDHA1-203ENST00000504120 TMC1Q8TDI8 760 aa22.28■■□□□ 1.16
PCDHA1-203ENST00000504120 UPF2Q9HAU5 1272 aaKnown RBP22.28■■□□□ 1.16
PCDHA1-203ENST00000504120 TSPY4P0CV99 314 aa22.27■■□□□ 1.16
PCDHA1-203ENST00000504120 TSPY10P0CW01 314 aa22.27■■□□□ 1.16
PCDHA1-203ENST00000504120 CLIP1P30622 1438 aa22.26■■□□□ 1.15
PCDHA1-203ENST00000504120 WRNQ14191 1432 aaPredicted RBP eCLIP22.25■■□□□ 1.15
PCDHA1-203ENST00000504120 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.23■■□□□ 1.15
PCDHA1-203ENST00000504120 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.22■■□□□ 1.15
PCDHA1-203ENST00000504120 MYO15BQ96JP2 1530 aa22.22■■□□□ 1.15
PCDHA1-203ENST00000504120 HSP90AA1P07900 732 aaKnown RBP22.21■■□□□ 1.15
PCDHA1-203ENST00000504120 GOLGA3Q08378 1498 aa22.2■■□□□ 1.14
PCDHA1-203ENST00000504120 CECR2Q9BXF3 1484 aa22.2■■□□□ 1.14
PCDHA1-203ENST00000504120 ANP32BQ92688 251 aaKnown RBP22.2■■□□□ 1.14
PCDHA1-203ENST00000504120 CCDC136Q96JN2 1154 aa22.18■■□□□ 1.14
PCDHA1-203ENST00000504120 MRS2Q9HD23 443 aa22.18■■□□□ 1.14
PCDHA1-203ENST00000504120 SALL2Q9Y467 1007 aaPredicted RBP22.18■■□□□ 1.14
PCDHA1-203ENST00000504120 WDR43Q15061 677 aaKnown RBP eCLIP22.17■■□□□ 1.14
PCDHA1-203ENST00000504120 KDM2AQ9Y2K7 1162 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 227.8 ms