RNA–Protein interactions for RNA: ENST00000497993.5

TMEM39A-212, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 590 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-212ENST00000497993 AEBP2Q6ZN18 517 aaPredicted RBP21.64■■□□□ 1.05
TMEM39A-212ENST00000497993 CHIC1Q5VXU3 224 aa21.24■□□□□ 0.99
TMEM39A-212ENST00000497993 PHF23Q9BUL5 403 aaPredicted RBP18.65■□□□□ 0.58
TMEM39A-212ENST00000497993 SENP3Q9H4L4 574 aaPredicted RBP18.43■□□□□ 0.54
TMEM39A-212ENST00000497993 PLPPR3Q6T4P5 718 aa17.3■□□□□ 0.36
TMEM39A-212ENST00000497993 FOXD1Q16676 465 aa17.05■□□□□ 0.32
TMEM39A-212ENST00000497993 PPP6R1Q9UPN7 881 aa16.42■□□□□ 0.22
TMEM39A-212ENST00000497993 ADRA2BP18089 450 aa16.41■□□□□ 0.22
TMEM39A-212ENST00000497993 PIAS4Q8N2W9 510 aaPredicted RBP16.09■□□□□ 0.17
TMEM39A-212ENST00000497993 MSH5O43196 834 aa15.76■□□□□ 0.11
TMEM39A-212ENST00000497993 PPP4R3CPQ6ZMV5 832 aa15.23■□□□□ 0.03
TMEM39A-212ENST00000497993 SCAF1Q9H7N4 1312 aaKnown RBP15.13■□□□□ 0.01
TMEM39A-212ENST00000497993 KCNA4P22459 653 aa14.9□□□□□ -0.02
TMEM39A-212ENST00000497993 NCBP3Q53F19 620 aaKnown RBP14.89□□□□□ -0.03
TMEM39A-212ENST00000497993 MAPK8IP2Q13387 824 aaPredicted RBP14.86□□□□□ -0.03
TMEM39A-212ENST00000497993 CNKSR2Q8WXI2 1034 aa14.82□□□□□ -0.04
TMEM39A-212ENST00000497993 DMRT2Q9Y5R5 561 aa14.71□□□□□ -0.05
TMEM39A-212ENST00000497993 NPM3O75607 178 aaKnown RBP14.61□□□□□ -0.07
TMEM39A-212ENST00000497993 RNF216Q9NWF9 866 aaPredicted RBP14.52□□□□□ -0.09
TMEM39A-212ENST00000497993 HOXD11P31277 338 aaPredicted RBP14.44□□□□□ -0.1
TMEM39A-212ENST00000497993 DNAJC5BQ9UF47 199 aa14.28□□□□□ -0.12
TMEM39A-212ENST00000497993 SLC4A1APQ9BWU0 796 aaKnown RBP14.22□□□□□ -0.13
TMEM39A-212ENST00000497993 POTEDQ86YR6 584 aa14.2□□□□□ -0.14
TMEM39A-212ENST00000497993 NISCHQ9Y2I1 1504 aa14.14□□□□□ -0.15
TMEM39A-212ENST00000497993 DCAF8L1A6NGE4 600 aa14.02□□□□□ -0.17
TMEM39A-212ENST00000497993 EHMT2Q96KQ7 1210 aa13.82□□□□□ -0.2
TMEM39A-212ENST00000497993 SLC4A2P04920 1241 aa13.77□□□□□ -0.21
TMEM39A-212ENST00000497993 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.74□□□□□ -0.21
TMEM39A-212ENST00000497993 FOXD4L1Q9NU39 408 aa13.74□□□□□ -0.21
TMEM39A-212ENST00000497993 ZBTB22O15209 634 aa13.69□□□□□ -0.22
TMEM39A-212ENST00000497993 CSRNP3Q8WYN3 585 aa13.69□□□□□ -0.22
TMEM39A-212ENST00000497993 MYCNP04198 464 aaPredicted RBP13.54□□□□□ -0.24
TMEM39A-212ENST00000497993 U3KPZ7 1027 aaPredicted RBP13.5□□□□□ -0.25
TMEM39A-212ENST00000497993 RNF39Q9H2S5 420 aa13.48□□□□□ -0.25
TMEM39A-212ENST00000497993 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.44□□□□□ -0.26
TMEM39A-212ENST00000497993 HNRNPUL2Q1KMD3 747 aaKnown RBP13.44□□□□□ -0.26
TMEM39A-212ENST00000497993 SAMD1Q6SPF0 538 aaPredicted RBP13.37□□□□□ -0.27
TMEM39A-212ENST00000497993 C1QBPQ07021 282 aaKnown RBP13.36□□□□□ -0.27
TMEM39A-212ENST00000497993 ATXN8OSP0DMR3 200 aa13.31□□□□□ -0.28
TMEM39A-212ENST00000497993 APLP2Q06481 763 aa13.3□□□□□ -0.28
TMEM39A-212ENST00000497993 ATF5Q9Y2D1 282 aaPredicted RBP13.1□□□□□ -0.31
TMEM39A-212ENST00000497993 CACNB1Q02641 598 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-212ENST00000497993 SPINK5Q9NQ38 1064 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-212ENST00000497993 CAPN15O75808 1086 aa13.05□□□□□ -0.32
TMEM39A-212ENST00000497993 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
TMEM39A-212ENST00000497993 TRHP20396 242 aaPredicted RBP13□□□□□ -0.33
TMEM39A-212ENST00000497993 DSG3P32926 999 aa12.84□□□□□ -0.35
TMEM39A-212ENST00000497993 POLA2Q14181 598 aa12.82□□□□□ -0.36
TMEM39A-212ENST00000497993 ABCB7O75027 752 aa12.78□□□□□ -0.36
TMEM39A-212ENST00000497993 CCDC180Q9P1Z9 1646 aa12.77□□□□□ -0.37
TMEM39A-212ENST00000497993 SLC24A1O60721 1099 aa12.71□□□□□ -0.37
TMEM39A-212ENST00000497993 ZBTB12Q9Y330 459 aaPredicted RBP12.68□□□□□ -0.38
TMEM39A-212ENST00000497993 FBLN2P98095 1184 aa12.62□□□□□ -0.39
TMEM39A-212ENST00000497993 MKRN4PQ13434 485 aaPredicted RBP12.54□□□□□ -0.4
TMEM39A-212ENST00000497993 FKBP8Q14318 412 aa12.36□□□□□ -0.43
TMEM39A-212ENST00000497993 OSCARQ8IYS5 282 aa12.35□□□□□ -0.43
TMEM39A-212ENST00000497993 SPDYE4A6NLX3 237 aa12.33□□□□□ -0.44
TMEM39A-212ENST00000497993 SPDYE2BA6NHP3 402 aa12.32□□□□□ -0.44
TMEM39A-212ENST00000497993 SPDYE6P0CI01 402 aa12.32□□□□□ -0.44
TMEM39A-212ENST00000497993 SPDYE2Q495Y8 402 aa12.32□□□□□ -0.44
TMEM39A-212ENST00000497993 RBM42Q9BTD8 480 aaKnown RBP12.29□□□□□ -0.44
TMEM39A-212ENST00000497993 ZNF692Q9BU19 519 aaPredicted RBP12.25□□□□□ -0.45
TMEM39A-212ENST00000497993 ABCC9O60706 1549 aa12.22□□□□□ -0.45
TMEM39A-212ENST00000497993 AMER1Q5JTC6 1135 aaPredicted RBP12.21□□□□□ -0.45
TMEM39A-212ENST00000497993 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
TMEM39A-212ENST00000497993 PROM2Q8N271 834 aa12.15□□□□□ -0.46
TMEM39A-212ENST00000497993 AKT1S1Q96B36 256 aa12.13□□□□□ -0.47
TMEM39A-212ENST00000497993 RTN4Q9NQC3 1192 aaKnown RBP12.13□□□□□ -0.47
TMEM39A-212ENST00000497993 PABPN1Q86U42 306 aaKnown RBP eCLIP12.07□□□□□ -0.48
TMEM39A-212ENST00000497993 FBXO3Q9UK99 471 aa11.99□□□□□ -0.49
TMEM39A-212ENST00000497993 REM2Q8IYK8 340 aaPredicted RBP11.98□□□□□ -0.49
TMEM39A-212ENST00000497993 STAG3Q9UJ98 1225 aa11.96□□□□□ -0.49
TMEM39A-212ENST00000497993 SPDYE1Q8NFV5 336 aaPredicted RBP11.94□□□□□ -0.5
TMEM39A-212ENST00000497993 MYO15BQ96JP2 1530 aa11.94□□□□□ -0.5
TMEM39A-212ENST00000497993 NACADO15069 1562 aa11.92□□□□□ -0.5
TMEM39A-212ENST00000497993 RB1CC1Q8TDY2 1594 aa11.91□□□□□ -0.5
TMEM39A-212ENST00000497993 DCAF1Q9Y4B6 1507 aa11.83□□□□□ -0.52
TMEM39A-212ENST00000497993 CLEC11AQ9Y240 323 aa11.83□□□□□ -0.52
TMEM39A-212ENST00000497993 PITPNM1O00562 1244 aa11.82□□□□□ -0.52
TMEM39A-212ENST00000497993 ZCCHC6Q5VYS8 1495 aaKnown RBP11.81□□□□□ -0.52
TMEM39A-212ENST00000497993 UNC13AQ9UPW8 1703 aa11.77□□□□□ -0.52
TMEM39A-212ENST00000497993 PRR29P0C7W0 189 aa11.77□□□□□ -0.53
TMEM39A-212ENST00000497993 VASPP50552 380 aaPredicted RBP11.76□□□□□ -0.53
TMEM39A-212ENST00000497993 CHRDL2Q6WN34 429 aa11.7□□□□□ -0.54
TMEM39A-212ENST00000497993 MIER1Q8N108 512 aa11.69□□□□□ -0.54
TMEM39A-212ENST00000497993 PLEKHG5O94827 1062 aa11.68□□□□□ -0.54
TMEM39A-212ENST00000497993 PLCD3Q8N3E9 789 aa11.68□□□□□ -0.54
TMEM39A-212ENST00000497993 FXR2P51116 673 aaKnown RBP eCLIP11.63□□□□□ -0.55
TMEM39A-212ENST00000497993 ZBTB47Q9UFB7 747 aaPredicted RBP11.61□□□□□ -0.55
TMEM39A-212ENST00000497993 IFNLR1Q8IU57 520 aaPredicted RBP11.6□□□□□ -0.55
TMEM39A-212ENST00000497993 CREBZFQ9NS37 354 aa11.6□□□□□ -0.55
TMEM39A-212ENST00000497993 BICRAQ9NZM4 1560 aa11.58□□□□□ -0.55
TMEM39A-212ENST00000497993 SHROOM4Q9ULL8 1493 aa11.57□□□□□ -0.56
TMEM39A-212ENST00000497993 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
TMEM39A-212ENST00000497993 PIP4P2Q8N4L2 257 aa11.56□□□□□ -0.56
TMEM39A-212ENST00000497993 PRKAR2AP13861 404 aaKnown RBP11.54□□□□□ -0.56
TMEM39A-212ENST00000497993 MNX1P50219 401 aaPredicted RBP11.5□□□□□ -0.57
TMEM39A-212ENST00000497993 CHADLQ6NUI6 762 aa11.5□□□□□ -0.57
TMEM39A-212ENST00000497993 SPOCK2Q92563 424 aa11.49□□□□□ -0.57
TMEM39A-212ENST00000497993 NPM1P06748 294 aaKnown RBP eCLIP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms