RNA–Protein interactions for RNA: ENST00000495561.1

SRRM1-219, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 2

Gene SRRM1, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-219ENST00000495561 AEBP2Q6ZN18 517 aaPredicted RBP31.14■■■□□ 2.58
SRRM1-219ENST00000495561 CHIC1Q5VXU3 224 aa29.69■■■□□ 2.34
SRRM1-219ENST00000495561 SENP3Q9H4L4 574 aaPredicted RBP26.51■■□□□ 1.83
SRRM1-219ENST00000495561 PHF23Q9BUL5 403 aaPredicted RBP26.19■■□□□ 1.78
SRRM1-219ENST00000495561 FOXD1Q16676 465 aa24.72■■□□□ 1.55
SRRM1-219ENST00000495561 PLPPR3Q6T4P5 718 aa23.76■■□□□ 1.39
SRRM1-219ENST00000495561 PPP6R1Q9UPN7 881 aa23.22■■□□□ 1.31
SRRM1-219ENST00000495561 ADRA2BP18089 450 aa23.15■■□□□ 1.3
SRRM1-219ENST00000495561 PIAS4Q8N2W9 510 aaPredicted RBP23.12■■□□□ 1.29
SRRM1-219ENST00000495561 MSH5O43196 834 aa23.05■■□□□ 1.28
SRRM1-219ENST00000495561 POTEDQ86YR6 584 aa22.3■■□□□ 1.16
SRRM1-219ENST00000495561 MAPK8IP2Q13387 824 aaPredicted RBP21.23■□□□□ 0.99
SRRM1-219ENST00000495561 SCAF1Q9H7N4 1312 aaKnown RBP21.14■□□□□ 0.97
SRRM1-219ENST00000495561 DMRT2Q9Y5R5 561 aa21.06■□□□□ 0.96
SRRM1-219ENST00000495561 PPP4R3CPQ6ZMV5 832 aa20.87■□□□□ 0.93
SRRM1-219ENST00000495561 CNKSR2Q8WXI2 1034 aa20.43■□□□□ 0.86
SRRM1-219ENST00000495561 HOXD11P31277 338 aaPredicted RBP20.33■□□□□ 0.85
SRRM1-219ENST00000495561 RNF216Q9NWF9 866 aaPredicted RBP20.21■□□□□ 0.83
SRRM1-219ENST00000495561 DCAF8L1A6NGE4 600 aa20.18■□□□□ 0.82
SRRM1-219ENST00000495561 NCBP3Q53F19 620 aaKnown RBP20.08■□□□□ 0.81
SRRM1-219ENST00000495561 NPM3O75607 178 aaKnown RBP19.81■□□□□ 0.76
SRRM1-219ENST00000495561 CACNB1Q02641 598 aaPredicted RBP19.71■□□□□ 0.75
SRRM1-219ENST00000495561 RNF39Q9H2S5 420 aa19.7■□□□□ 0.74
SRRM1-219ENST00000495561 DNAJC5BQ9UF47 199 aa19.59■□□□□ 0.73
SRRM1-219ENST00000495561 KCNA4P22459 653 aa19.56■□□□□ 0.72
SRRM1-219ENST00000495561 C1QBPQ07021 282 aaKnown RBP19.4■□□□□ 0.7
SRRM1-219ENST00000495561 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.36■□□□□ 0.696e-9■■■□□ 18
SRRM1-219ENST00000495561 U3KPZ7 1027 aaPredicted RBP18.99■□□□□ 0.63
SRRM1-219ENST00000495561 SLC4A2P04920 1241 aa18.9■□□□□ 0.62
SRRM1-219ENST00000495561 SPINK5Q9NQ38 1064 aaPredicted RBP18.68■□□□□ 0.58
SRRM1-219ENST00000495561 CAPN15O75808 1086 aa18.62■□□□□ 0.57
SRRM1-219ENST00000495561 DSG3P32926 999 aa18.49■□□□□ 0.55
SRRM1-219ENST00000495561 SLC4A1APQ9BWU0 796 aaKnown RBP18.48■□□□□ 0.55
SRRM1-219ENST00000495561 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.46■□□□□ 0.55
SRRM1-219ENST00000495561 HNRNPUL2Q1KMD3 747 aaKnown RBP18.46■□□□□ 0.55
SRRM1-219ENST00000495561 APLP2Q06481 763 aa18.43■□□□□ 0.54
SRRM1-219ENST00000495561 SAMD1Q6SPF0 538 aaPredicted RBP18.38■□□□□ 0.53
SRRM1-219ENST00000495561 TRHP20396 242 aaPredicted RBP18.36■□□□□ 0.53
SRRM1-219ENST00000495561 ZNF219Q9P2Y4 722 aaPredicted RBP18.32■□□□□ 0.52
SRRM1-219ENST00000495561 MYCNP04198 464 aaPredicted RBP18.31■□□□□ 0.52
SRRM1-219ENST00000495561 ABCB7O75027 752 aa18.22■□□□□ 0.51
SRRM1-219ENST00000495561 FOXD4L1Q9NU39 408 aa18.19■□□□□ 0.5
SRRM1-219ENST00000495561 ZBTB22O15209 634 aa18.01■□□□□ 0.47
SRRM1-219ENST00000495561 ATF5Q9Y2D1 282 aaPredicted RBP17.91■□□□□ 0.46
SRRM1-219ENST00000495561 POLA2Q14181 598 aa17.9■□□□□ 0.46
SRRM1-219ENST00000495561 RBM42Q9BTD8 480 aaKnown RBP17.62■□□□□ 0.41
SRRM1-219ENST00000495561 ATXN8OSP0DMR3 200 aa17.61■□□□□ 0.41
SRRM1-219ENST00000495561 ZBTB12Q9Y330 459 aaPredicted RBP17.53■□□□□ 0.4
SRRM1-219ENST00000495561 POTEHQ6S545 545 aa17.49■□□□□ 0.39
SRRM1-219ENST00000495561 OSCARQ8IYS5 282 aa17.34■□□□□ 0.37
SRRM1-219ENST00000495561 CSRNP3Q8WYN3 585 aa17.28■□□□□ 0.36
SRRM1-219ENST00000495561 AKT1S1Q96B36 256 aa17.25■□□□□ 0.35
SRRM1-219ENST00000495561 CHRDL2Q6WN34 429 aa17.2■□□□□ 0.34
SRRM1-219ENST00000495561 FBLN2P98095 1184 aa17.16■□□□□ 0.34
SRRM1-219ENST00000495561 EHMT2Q96KQ7 1210 aa17.12■□□□□ 0.33
SRRM1-219ENST00000495561 REM2Q8IYK8 340 aaPredicted RBP17.1■□□□□ 0.33
SRRM1-219ENST00000495561 MKRN4PQ13434 485 aaPredicted RBP17.09■□□□□ 0.33
SRRM1-219ENST00000495561 SPDYE2BA6NHP3 402 aa17.01■□□□□ 0.31
SRRM1-219ENST00000495561 SPDYE6P0CI01 402 aa17.01■□□□□ 0.31
SRRM1-219ENST00000495561 SPDYE2Q495Y8 402 aa17.01■□□□□ 0.31
SRRM1-219ENST00000495561 PITPNM1O00562 1244 aa16.93■□□□□ 0.3
SRRM1-219ENST00000495561 PIP4P2Q8N4L2 257 aa16.84■□□□□ 0.29
SRRM1-219ENST00000495561 ZNF692Q9BU19 519 aaPredicted RBP16.83■□□□□ 0.28
SRRM1-219ENST00000495561 SSUH2Q9Y2M2 353 aa16.81■□□□□ 0.28
SRRM1-219ENST00000495561 FXR2P51116 673 aaKnown RBP eCLIP16.74■□□□□ 0.275e-6■■■□□ 14.9
SRRM1-219ENST00000495561 SPDYE1Q8NFV5 336 aaPredicted RBP16.67■□□□□ 0.26
SRRM1-219ENST00000495561 CLEC11AQ9Y240 323 aa16.65■□□□□ 0.26
SRRM1-219ENST00000495561 PABPN1Q86U42 306 aaKnown RBP eCLIP16.6■□□□□ 0.25
SRRM1-219ENST00000495561 PRKAR2AP13861 404 aaKnown RBP16.48■□□□□ 0.23
SRRM1-219ENST00000495561 HAX1O00165 279 aa16.47■□□□□ 0.23
SRRM1-219ENST00000495561 SP7Q8TDD2 431 aaPredicted RBP16.46■□□□□ 0.23
SRRM1-219ENST00000495561 PRR29P0C7W0 189 aa16.39■□□□□ 0.21
SRRM1-219ENST00000495561 SPDYE4A6NLX3 237 aa16.33■□□□□ 0.2
SRRM1-219ENST00000495561 CHADLQ6NUI6 762 aa16.33■□□□□ 0.2
SRRM1-219ENST00000495561 EVX2Q03828 476 aa16.31■□□□□ 0.2
SRRM1-219ENST00000495561 C19orf67A6NJJ6 358 aa16.21■□□□□ 0.19
SRRM1-219ENST00000495561 STAG3Q9UJ98 1225 aa16.14■□□□□ 0.17
SRRM1-219ENST00000495561 FARP1Q9Y4F1 1045 aaPredicted RBP16.1■□□□□ 0.17
SRRM1-219ENST00000495561 CREBZFQ9NS37 354 aa16.03■□□□□ 0.16
SRRM1-219ENST00000495561 CD44P16070 742 aaKnown RBP15.97■□□□□ 0.15
SRRM1-219ENST00000495561 PROM2Q8N271 834 aa15.97■□□□□ 0.15
SRRM1-219ENST00000495561 GABBR2O75899 941 aa15.94■□□□□ 0.14
SRRM1-219ENST00000495561 MNX1P50219 401 aaPredicted RBP15.78■□□□□ 0.12
SRRM1-219ENST00000495561 ZRANB1Q9UGI0 708 aa15.76■□□□□ 0.11
SRRM1-219ENST00000495561 ZNF579Q8NAF0 562 aaKnown RBP15.73■□□□□ 0.11
SRRM1-219ENST00000495561 NPM1P06748 294 aaKnown RBP eCLIP15.72■□□□□ 0.11
SRRM1-219ENST00000495561 CLCN6P51797 869 aa15.69■□□□□ 0.1
SRRM1-219ENST00000495561 FKBP8Q14318 412 aa15.65■□□□□ 0.1
SRRM1-219ENST00000495561 PAK3O75914 559 aaPredicted RBP15.64■□□□□ 0.09
SRRM1-219ENST00000495561 POTEIP0CG38 1075 aa15.61■□□□□ 0.09
SRRM1-219ENST00000495561 PHF12Q96QT6 1004 aa15.57■□□□□ 0.08
SRRM1-219ENST00000495561 MIER1Q8N108 512 aa15.55■□□□□ 0.08
SRRM1-219ENST00000495561 GALR2O43603 387 aaPredicted RBP15.54■□□□□ 0.08
SRRM1-219ENST00000495561 PLEKHG5O94827 1062 aa15.51■□□□□ 0.07
SRRM1-219ENST00000495561 DCBLD2Q96PD2 775 aa15.51■□□□□ 0.07
SRRM1-219ENST00000495561 PLCD3Q8N3E9 789 aa15.45■□□□□ 0.06
SRRM1-219ENST00000495561 TSPYL2Q9H2G4 693 aaPredicted RBP15.45■□□□□ 0.06
SRRM1-219ENST00000495561 LHX8Q68G74 356 aa15.44■□□□□ 0.06
SRRM1-219ENST00000495561 CCDC61Q9Y6R9 512 aa15.39■□□□□ 0.05
SRRM1-219ENST00000495561 RASEFQ8IZ41 740 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms