RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 AEBP2Q6ZN18 517 aaPredicted RBP28.49■■■□□ 2.15
VIM-207ENST00000495528 CHIC1Q5VXU3 224 aa27.94■■■□□ 2.06
VIM-207ENST00000495528 PHF23Q9BUL5 403 aaPredicted RBP24.63■■□□□ 1.53
VIM-207ENST00000495528 SENP3Q9H4L4 574 aaPredicted RBP24.1■■□□□ 1.45
VIM-207ENST00000495528 PLPPR3Q6T4P5 718 aa22.76■■□□□ 1.23
VIM-207ENST00000495528 FOXD1Q16676 465 aa22.4■■□□□ 1.18
VIM-207ENST00000495528 ADRA2BP18089 450 aa21.73■■□□□ 1.07
VIM-207ENST00000495528 PPP6R1Q9UPN7 881 aa21.71■■□□□ 1.07
VIM-207ENST00000495528 PIAS4Q8N2W9 510 aaPredicted RBP21.19■□□□□ 0.98
VIM-207ENST00000495528 MSH5O43196 834 aa20.61■□□□□ 0.89
VIM-207ENST00000495528 PPP4R3CPQ6ZMV5 832 aa20.12■□□□□ 0.81
VIM-207ENST00000495528 POTEDQ86YR6 584 aa20.04■□□□□ 0.8
VIM-207ENST00000495528 KCNA4P22459 653 aa19.86■□□□□ 0.77
VIM-207ENST00000495528 SCAF1Q9H7N4 1312 aaKnown RBP19.78■□□□□ 0.76
VIM-207ENST00000495528 MAPK8IP2Q13387 824 aaPredicted RBP19.67■□□□□ 0.74
VIM-207ENST00000495528 NCBP3Q53F19 620 aaKnown RBP19.6■□□□□ 0.73
VIM-207ENST00000495528 CNKSR2Q8WXI2 1034 aa19.47■□□□□ 0.71
VIM-207ENST00000495528 NPM3O75607 178 aaKnown RBP19.34■□□□□ 0.69
VIM-207ENST00000495528 DMRT2Q9Y5R5 561 aa19.26■□□□□ 0.67
VIM-207ENST00000495528 RNF216Q9NWF9 866 aaPredicted RBP19.04■□□□□ 0.64
VIM-207ENST00000495528 SLC4A1APQ9BWU0 796 aaKnown RBP18.93■□□□□ 0.62
VIM-207ENST00000495528 HOXD11P31277 338 aaPredicted RBP18.9■□□□□ 0.62
VIM-207ENST00000495528 EHMT2Q96KQ7 1210 aa18.66■□□□□ 0.58
VIM-207ENST00000495528 DCAF8L1A6NGE4 600 aa18.57■□□□□ 0.56
VIM-207ENST00000495528 DNAJC5BQ9UF47 199 aa18.57■□□□□ 0.56
VIM-207ENST00000495528 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
VIM-207ENST00000495528 ZBTB22O15209 634 aa18.27■□□□□ 0.52
VIM-207ENST00000495528 SLC4A2P04920 1241 aa18.22■□□□□ 0.51
VIM-207ENST00000495528 FOXD4L1Q9NU39 408 aa18.18■□□□□ 0.5
VIM-207ENST00000495528 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.12■□□□□ 0.492e-9■■□□□ 12.6
VIM-207ENST00000495528 MYCNP04198 464 aaPredicted RBP17.84■□□□□ 0.45
VIM-207ENST00000495528 U3KPZ7 1027 aaPredicted RBP17.8■□□□□ 0.44
VIM-207ENST00000495528 CACNB1Q02641 598 aaPredicted RBP17.68■□□□□ 0.42
VIM-207ENST00000495528 RNF39Q9H2S5 420 aa17.66■□□□□ 0.42
VIM-207ENST00000495528 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.58■□□□□ 0.4
VIM-207ENST00000495528 HNRNPUL2Q1KMD3 747 aaKnown RBP17.58■□□□□ 0.4
VIM-207ENST00000495528 SAMD1Q6SPF0 538 aaPredicted RBP17.54■□□□□ 0.4
VIM-207ENST00000495528 ATXN8OSP0DMR3 200 aa17.47■□□□□ 0.39
VIM-207ENST00000495528 ATF5Q9Y2D1 282 aaPredicted RBP17.42■□□□□ 0.38
VIM-207ENST00000495528 C1QBPQ07021 282 aaKnown RBP17.4■□□□□ 0.38
VIM-207ENST00000495528 APLP2Q06481 763 aa17.35■□□□□ 0.37
VIM-207ENST00000495528 SPINK5Q9NQ38 1064 aaPredicted RBP17.31■□□□□ 0.36
VIM-207ENST00000495528 CAPN15O75808 1086 aa17.25■□□□□ 0.35
VIM-207ENST00000495528 TRHP20396 242 aaPredicted RBP17.22■□□□□ 0.35
VIM-207ENST00000495528 ZNF219Q9P2Y4 722 aaPredicted RBP17.11■□□□□ 0.33
VIM-207ENST00000495528 ABCB7O75027 752 aa16.96■□□□□ 0.31
VIM-207ENST00000495528 POLA2Q14181 598 aa16.93■□□□□ 0.3
VIM-207ENST00000495528 DSG3P32926 999 aa16.85■□□□□ 0.29
VIM-207ENST00000495528 FBLN2P98095 1184 aa16.64■□□□□ 0.25
VIM-207ENST00000495528 MKRN4PQ13434 485 aaPredicted RBP16.64■□□□□ 0.25
VIM-207ENST00000495528 ZBTB12Q9Y330 459 aaPredicted RBP16.58■□□□□ 0.24
VIM-207ENST00000495528 FKBP8Q14318 412 aa16.56■□□□□ 0.24
VIM-207ENST00000495528 SPDYE4A6NLX3 237 aa16.36■□□□□ 0.21
VIM-207ENST00000495528 OSCARQ8IYS5 282 aa16.36■□□□□ 0.21
VIM-207ENST00000495528 ZNF692Q9BU19 519 aaPredicted RBP16.19■□□□□ 0.18
VIM-207ENST00000495528 SPDYE2BA6NHP3 402 aa16.16■□□□□ 0.18
VIM-207ENST00000495528 SPDYE6P0CI01 402 aa16.16■□□□□ 0.18
VIM-207ENST00000495528 SPDYE2Q495Y8 402 aa16.16■□□□□ 0.18
VIM-207ENST00000495528 SSUH2Q9Y2M2 353 aa16.04■□□□□ 0.16
VIM-207ENST00000495528 RBM42Q9BTD8 480 aaKnown RBP16.01■□□□□ 0.15
VIM-207ENST00000495528 PROM2Q8N271 834 aa16■□□□□ 0.15
VIM-207ENST00000495528 PABPN1Q86U42 306 aaKnown RBP eCLIP15.99■□□□□ 0.15
VIM-207ENST00000495528 AKT1S1Q96B36 256 aa15.86■□□□□ 0.13
VIM-207ENST00000495528 FBXO3Q9UK99 471 aa15.85■□□□□ 0.13
VIM-207ENST00000495528 NISCHQ9Y2I1 1504 aa15.83■□□□□ 0.12
VIM-207ENST00000495528 REM2Q8IYK8 340 aaPredicted RBP15.75■□□□□ 0.11
VIM-207ENST00000495528 POTEHQ6S545 545 aa15.69■□□□□ 0.1
VIM-207ENST00000495528 CLEC11AQ9Y240 323 aa15.69■□□□□ 0.1
VIM-207ENST00000495528 STAG3Q9UJ98 1225 aa15.68■□□□□ 0.1
VIM-207ENST00000495528 VASPP50552 380 aaPredicted RBP15.67■□□□□ 0.1
VIM-207ENST00000495528 SPDYE1Q8NFV5 336 aaPredicted RBP15.67■□□□□ 0.1
VIM-207ENST00000495528 PITPNM1O00562 1244 aa15.58■□□□□ 0.08
VIM-207ENST00000495528 MIER1Q8N108 512 aa15.53■□□□□ 0.08
VIM-207ENST00000495528 PRR29P0C7W0 189 aa15.52■□□□□ 0.08
VIM-207ENST00000495528 PLCD3Q8N3E9 789 aa15.52■□□□□ 0.08
VIM-207ENST00000495528 IFNLR1Q8IU57 520 aaPredicted RBP15.48■□□□□ 0.07
VIM-207ENST00000495528 KLHL34Q8N239 644 aa15.43■□□□□ 0.06
VIM-207ENST00000495528 CHRDL2Q6WN34 429 aa15.42■□□□□ 0.06
VIM-207ENST00000495528 PLEKHG5O94827 1062 aa15.39■□□□□ 0.05
VIM-207ENST00000495528 RTN4Q9NQC3 1192 aaKnown RBP15.33■□□□□ 0.04
VIM-207ENST00000495528 CREBZFQ9NS37 354 aa15.33■□□□□ 0.04
VIM-207ENST00000495528 AMER1Q5JTC6 1135 aaPredicted RBP15.3■□□□□ 0.04
VIM-207ENST00000495528 CHADLQ6NUI6 762 aa15.28■□□□□ 0.04
VIM-207ENST00000495528 SPOCK2Q92563 424 aa15.25■□□□□ 0.03
VIM-207ENST00000495528 ZBTB47Q9UFB7 747 aaPredicted RBP15.25■□□□□ 0.03
VIM-207ENST00000495528 PRKAR2AP13861 404 aaKnown RBP15.21■□□□□ 0.03
VIM-207ENST00000495528 FXR2P51116 673 aaKnown RBP eCLIP15.21■□□□□ 0.03
VIM-207ENST00000495528 PIP4P2Q8N4L2 257 aa15.19■□□□□ 0.02
VIM-207ENST00000495528 MNX1P50219 401 aaPredicted RBP15.16■□□□□ 0.02
VIM-207ENST00000495528 FARP1Q9Y4F1 1045 aaPredicted RBP15.09■□□□□ 0.01
VIM-207ENST00000495528 NPM1P06748 294 aaKnown RBP eCLIP15.07■□□□□ 0
VIM-207ENST00000495528 NUBP1P53384 320 aa15.06■□□□□ 0
VIM-207ENST00000495528 CIZ1Q9ULV3 898 aaPredicted RBP15.06■□□□□ 0
VIM-207ENST00000495528 PKD2Q13563 968 aa15□□□□□ -0.01
VIM-207ENST00000495528 DCAF8Q5TAQ9 597 aa14.99□□□□□ -0.01
VIM-207ENST00000495528 RASEFQ8IZ41 740 aa14.99□□□□□ -0.01
VIM-207ENST00000495528 FAM212AQ96EL1 285 aa14.94□□□□□ -0.02
VIM-207ENST00000495528 ECM2O94769 699 aaPredicted RBP14.93□□□□□ -0.02
VIM-207ENST00000495528 GSE1Q14687 1217 aa14.92□□□□□ -0.02
VIM-207ENST00000495528 TSPYL2Q9H2G4 693 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms