RNA–Protein interactions for RNA: ENST00000494934.5

SRRM1-218, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 3

Gene SRRM1, Length 802 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-218ENST00000494934 AEBP2Q6ZN18 517 aaPredicted RBP25.14■■□□□ 1.62
SRRM1-218ENST00000494934 CHIC1Q5VXU3 224 aa24.6■■□□□ 1.53
SRRM1-218ENST00000494934 PHF23Q9BUL5 403 aaPredicted RBP21.76■■□□□ 1.07
SRRM1-218ENST00000494934 SENP3Q9H4L4 574 aaPredicted RBP21.11■□□□□ 0.97
SRRM1-218ENST00000494934 PLPPR3Q6T4P5 718 aa19.96■□□□□ 0.79
SRRM1-218ENST00000494934 FOXD1Q16676 465 aa19.7■□□□□ 0.74
SRRM1-218ENST00000494934 PPP6R1Q9UPN7 881 aa19.14■□□□□ 0.65
SRRM1-218ENST00000494934 ADRA2BP18089 450 aa19.07■□□□□ 0.64
SRRM1-218ENST00000494934 PIAS4Q8N2W9 510 aaPredicted RBP18.5■□□□□ 0.55
SRRM1-218ENST00000494934 MSH5O43196 834 aa17.95■□□□□ 0.46
SRRM1-218ENST00000494934 PPP4R3CPQ6ZMV5 832 aa17.66■□□□□ 0.42
SRRM1-218ENST00000494934 KCNA4P22459 653 aa17.48■□□□□ 0.39
SRRM1-218ENST00000494934 MAPK8IP2Q13387 824 aaPredicted RBP17.29■□□□□ 0.36
SRRM1-218ENST00000494934 SCAF1Q9H7N4 1312 aaKnown RBP17.24■□□□□ 0.35
SRRM1-218ENST00000494934 NCBP3Q53F19 620 aaKnown RBP17.11■□□□□ 0.33
SRRM1-218ENST00000494934 CNKSR2Q8WXI2 1034 aa17.09■□□□□ 0.33
SRRM1-218ENST00000494934 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
SRRM1-218ENST00000494934 DMRT2Q9Y5R5 561 aa16.95■□□□□ 0.3
SRRM1-218ENST00000494934 RNF216Q9NWF9 866 aaPredicted RBP16.74■□□□□ 0.27
SRRM1-218ENST00000494934 HOXD11P31277 338 aaPredicted RBP16.68■□□□□ 0.26
SRRM1-218ENST00000494934 SLC4A1APQ9BWU0 796 aaKnown RBP16.58■□□□□ 0.24
SRRM1-218ENST00000494934 DNAJC5BQ9UF47 199 aa16.55■□□□□ 0.24
SRRM1-218ENST00000494934 EHMT2Q96KQ7 1210 aa16.29■□□□□ 0.2
SRRM1-218ENST00000494934 POTEDQ86YR6 584 aa16.19■□□□□ 0.18
SRRM1-218ENST00000494934 ZBTB22O15209 634 aa16.17■□□□□ 0.18
SRRM1-218ENST00000494934 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
SRRM1-218ENST00000494934 SLC4A2P04920 1241 aa16.1■□□□□ 0.17
SRRM1-218ENST00000494934 DCAF8L1A6NGE4 600 aa16.06■□□□□ 0.16
SRRM1-218ENST00000494934 FOXD4L1Q9NU39 408 aa15.96■□□□□ 0.15
SRRM1-218ENST00000494934 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.76■□□□□ 0.113e-7■■■□□ 17.6
SRRM1-218ENST00000494934 U3KPZ7 1027 aaPredicted RBP15.67■□□□□ 0.1
SRRM1-218ENST00000494934 MYCNP04198 464 aaPredicted RBP15.64■□□□□ 0.09
SRRM1-218ENST00000494934 RNF39Q9H2S5 420 aa15.5■□□□□ 0.07
SRRM1-218ENST00000494934 ATXN8OSP0DMR3 200 aa15.38■□□□□ 0.05
SRRM1-218ENST00000494934 ATF5Q9Y2D1 282 aaPredicted RBP15.38■□□□□ 0.05
SRRM1-218ENST00000494934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.32■□□□□ 0.04
SRRM1-218ENST00000494934 HNRNPUL2Q1KMD3 747 aaKnown RBP15.32■□□□□ 0.04
SRRM1-218ENST00000494934 SAMD1Q6SPF0 538 aaPredicted RBP15.32■□□□□ 0.04
SRRM1-218ENST00000494934 C1QBPQ07021 282 aaKnown RBP15.25■□□□□ 0.03
SRRM1-218ENST00000494934 SPINK5Q9NQ38 1064 aaPredicted RBP15.18■□□□□ 0.02
SRRM1-218ENST00000494934 APLP2Q06481 763 aa15.07■□□□□ 0
SRRM1-218ENST00000494934 ZNF219Q9P2Y4 722 aaPredicted RBP15□□□□□ -0.01
SRRM1-218ENST00000494934 CAPN15O75808 1086 aa14.98□□□□□ -0.01
SRRM1-218ENST00000494934 TRHP20396 242 aaPredicted RBP14.97□□□□□ -0.01
SRRM1-218ENST00000494934 CACNB1Q02641 598 aaPredicted RBP14.88□□□□□ -0.03
SRRM1-218ENST00000494934 DSG3P32926 999 aa14.81□□□□□ -0.04
SRRM1-218ENST00000494934 POLA2Q14181 598 aa14.8□□□□□ -0.04
SRRM1-218ENST00000494934 ABCB7O75027 752 aa14.78□□□□□ -0.04
SRRM1-218ENST00000494934 MKRN4PQ13434 485 aaPredicted RBP14.71□□□□□ -0.05
SRRM1-218ENST00000494934 FKBP8Q14318 412 aa14.48□□□□□ -0.09
SRRM1-218ENST00000494934 FBLN2P98095 1184 aa14.47□□□□□ -0.09
SRRM1-218ENST00000494934 ZBTB12Q9Y330 459 aaPredicted RBP14.45□□□□□ -0.1
SRRM1-218ENST00000494934 SPDYE4A6NLX3 237 aa14.31□□□□□ -0.12
SRRM1-218ENST00000494934 OSCARQ8IYS5 282 aa14.31□□□□□ -0.12
SRRM1-218ENST00000494934 PROM2Q8N271 834 aa14.23□□□□□ -0.13
SRRM1-218ENST00000494934 SPDYE2BA6NHP3 402 aa14.16□□□□□ -0.14
SRRM1-218ENST00000494934 SPDYE6P0CI01 402 aa14.16□□□□□ -0.14
SRRM1-218ENST00000494934 SPDYE2Q495Y8 402 aa14.16□□□□□ -0.14
SRRM1-218ENST00000494934 SSUH2Q9Y2M2 353 aa14.15□□□□□ -0.14
SRRM1-218ENST00000494934 ZNF692Q9BU19 519 aaPredicted RBP14.11□□□□□ -0.15
SRRM1-218ENST00000494934 RTN4Q9NQC3 1192 aaKnown RBP14.04□□□□□ -0.16
SRRM1-218ENST00000494934 PABPN1Q86U42 306 aaKnown RBP eCLIP13.96□□□□□ -0.17
SRRM1-218ENST00000494934 RBM42Q9BTD8 480 aaKnown RBP13.95□□□□□ -0.18
SRRM1-218ENST00000494934 AMER1Q5JTC6 1135 aaPredicted RBP13.91□□□□□ -0.18
SRRM1-218ENST00000494934 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
SRRM1-218ENST00000494934 FBXO3Q9UK99 471 aa13.83□□□□□ -0.2
SRRM1-218ENST00000494934 REM2Q8IYK8 340 aaPredicted RBP13.8□□□□□ -0.2
SRRM1-218ENST00000494934 VASPP50552 380 aaPredicted RBP13.74□□□□□ -0.21
SRRM1-218ENST00000494934 STAG3Q9UJ98 1225 aa13.68□□□□□ -0.22
SRRM1-218ENST00000494934 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
SRRM1-218ENST00000494934 SPDYE1Q8NFV5 336 aaPredicted RBP13.66□□□□□ -0.22
SRRM1-218ENST00000494934 SLC24A1O60721 1099 aa13.63□□□□□ -0.23
SRRM1-218ENST00000494934 IFNLR1Q8IU57 520 aaPredicted RBP13.63□□□□□ -0.23
SRRM1-218ENST00000494934 CLEC11AQ9Y240 323 aa13.59□□□□□ -0.23
SRRM1-218ENST00000494934 PRR29P0C7W0 189 aa13.5□□□□□ -0.25
SRRM1-218ENST00000494934 MIER1Q8N108 512 aa13.5□□□□□ -0.25
SRRM1-218ENST00000494934 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
SRRM1-218ENST00000494934 PLCD3Q8N3E9 789 aa13.47□□□□□ -0.25
SRRM1-218ENST00000494934 MNX1P50219 401 aaPredicted RBP13.43□□□□□ -0.26
SRRM1-218ENST00000494934 FXR2P51116 673 aaKnown RBP eCLIP13.39□□□□□ -0.275e-6■■■□□ 14.9
SRRM1-218ENST00000494934 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
SRRM1-218ENST00000494934 KLHL34Q8N239 644 aa13.36□□□□□ -0.27
SRRM1-218ENST00000494934 CHADLQ6NUI6 762 aa13.35□□□□□ -0.27
SRRM1-218ENST00000494934 SPOCK2Q92563 424 aa13.34□□□□□ -0.27
SRRM1-218ENST00000494934 PIP4P2Q8N4L2 257 aa13.32□□□□□ -0.28
SRRM1-218ENST00000494934 PLEKHG5O94827 1062 aa13.28□□□□□ -0.28
SRRM1-218ENST00000494934 PRKAR2AP13861 404 aaKnown RBP13.27□□□□□ -0.29
SRRM1-218ENST00000494934 NUBP1P53384 320 aa13.27□□□□□ -0.29
SRRM1-218ENST00000494934 PKD2Q13563 968 aa13.26□□□□□ -0.29
SRRM1-218ENST00000494934 ZBTB47Q9UFB7 747 aaPredicted RBP13.26□□□□□ -0.29
SRRM1-218ENST00000494934 FARP1Q9Y4F1 1045 aaPredicted RBP13.21□□□□□ -0.29
SRRM1-218ENST00000494934 RASEFQ8IZ41 740 aa13.17□□□□□ -0.3
SRRM1-218ENST00000494934 NPM1P06748 294 aaKnown RBP eCLIP13.1□□□□□ -0.31
SRRM1-218ENST00000494934 CIZ1Q9ULV3 898 aaPredicted RBP13.06□□□□□ -0.32
SRRM1-218ENST00000494934 ECM2O94769 699 aaPredicted RBP13.02□□□□□ -0.33
SRRM1-218ENST00000494934 GSE1Q14687 1217 aa13.02□□□□□ -0.33
SRRM1-218ENST00000494934 DCAF8Q5TAQ9 597 aa13.02□□□□□ -0.33
SRRM1-218ENST00000494934 FAM212AQ96EL1 285 aa13.01□□□□□ -0.33
SRRM1-218ENST00000494934 RGL2O15211 777 aa12.99□□□□□ -0.33
SRRM1-218ENST00000494934 TSPYL2Q9H2G4 693 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms