RNA–Protein interactions for RNA: ENST00000494268.1

MSL3-217, Transcript of MSL complex subunit 3, humanhuman

TSL 2

Gene MSL3, Length 1,124 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-217ENST00000494268 AEBP2Q6ZN18 517 aaPredicted RBP30.76■■■□□ 2.51
MSL3-217ENST00000494268 CHIC1Q5VXU3 224 aa30.05■■■□□ 2.4
MSL3-217ENST00000494268 PHF23Q9BUL5 403 aaPredicted RBP26.52■■□□□ 1.84
MSL3-217ENST00000494268 SENP3Q9H4L4 574 aaPredicted RBP25.97■■□□□ 1.75
MSL3-217ENST00000494268 PLPPR3Q6T4P5 718 aa24.42■■□□□ 1.5
MSL3-217ENST00000494268 FOXD1Q16676 465 aa24.18■■□□□ 1.46
MSL3-217ENST00000494268 PPP6R1Q9UPN7 881 aa23.4■■□□□ 1.34
MSL3-217ENST00000494268 ADRA2BP18089 450 aa23.37■■□□□ 1.33
MSL3-217ENST00000494268 PIAS4Q8N2W9 510 aaPredicted RBP22.79■■□□□ 1.24
MSL3-217ENST00000494268 MSH5O43196 834 aa22.15■■□□□ 1.14
MSL3-217ENST00000494268 PPP4R3CPQ6ZMV5 832 aa21.58■■□□□ 1.05
MSL3-217ENST00000494268 SCAF1Q9H7N4 1312 aaKnown RBP21.25■□□□□ 0.99
MSL3-217ENST00000494268 KCNA4P22459 653 aa21.22■□□□□ 0.99
MSL3-217ENST00000494268 MAPK8IP2Q13387 824 aaPredicted RBP21.21■□□□□ 0.99
MSL3-217ENST00000494268 NCBP3Q53F19 620 aaKnown RBP20.96■□□□□ 0.95
MSL3-217ENST00000494268 CNKSR2Q8WXI2 1034 aa20.91■□□□□ 0.94
MSL3-217ENST00000494268 DMRT2Q9Y5R5 561 aa20.77■□□□□ 0.92
MSL3-217ENST00000494268 NPM3O75607 178 aaKnown RBP20.73■□□□□ 0.91
MSL3-217ENST00000494268 RNF216Q9NWF9 866 aaPredicted RBP20.48■□□□□ 0.87
MSL3-217ENST00000494268 POTEDQ86YR6 584 aa20.47■□□□□ 0.87
MSL3-217ENST00000494268 HOXD11P31277 338 aaPredicted RBP20.38■□□□□ 0.85
MSL3-217ENST00000494268 SLC4A1APQ9BWU0 796 aaKnown RBP20.18■□□□□ 0.82
MSL3-217ENST00000494268 DNAJC5BQ9UF47 199 aa20.02■□□□□ 0.8
MSL3-217ENST00000494268 DCAF8L1A6NGE4 600 aa19.91■□□□□ 0.78
MSL3-217ENST00000494268 EHMT2Q96KQ7 1210 aa19.77■□□□□ 0.76
MSL3-217ENST00000494268 SLC4A2P04920 1241 aa19.59■□□□□ 0.73
MSL3-217ENST00000494268 ZBTB22O15209 634 aa19.55■□□□□ 0.72
MSL3-217ENST00000494268 CSRNP3Q8WYN3 585 aa19.5■□□□□ 0.71
MSL3-217ENST00000494268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.7
MSL3-217ENST00000494268 FOXD4L1Q9NU39 408 aa19.43■□□□□ 0.7
MSL3-217ENST00000494268 U3KPZ7 1027 aaPredicted RBP19.16■□□□□ 0.66
MSL3-217ENST00000494268 MYCNP04198 464 aaPredicted RBP19.09■□□□□ 0.65
MSL3-217ENST00000494268 RNF39Q9H2S5 420 aa19.05■□□□□ 0.64
MSL3-217ENST00000494268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.83■□□□□ 0.6
MSL3-217ENST00000494268 HNRNPUL2Q1KMD3 747 aaKnown RBP18.83■□□□□ 0.6
MSL3-217ENST00000494268 SAMD1Q6SPF0 538 aaPredicted RBP18.8■□□□□ 0.6
MSL3-217ENST00000494268 C1QBPQ07021 282 aaKnown RBP18.78■□□□□ 0.6
MSL3-217ENST00000494268 ATXN8OSP0DMR3 200 aa18.7■□□□□ 0.58
MSL3-217ENST00000494268 ATF5Q9Y2D1 282 aaPredicted RBP18.7■□□□□ 0.58
MSL3-217ENST00000494268 SPINK5Q9NQ38 1064 aaPredicted RBP18.63■□□□□ 0.57
MSL3-217ENST00000494268 APLP2Q06481 763 aa18.58■□□□□ 0.56
MSL3-217ENST00000494268 CAPN15O75808 1086 aa18.51■□□□□ 0.55
MSL3-217ENST00000494268 CACNB1Q02641 598 aaPredicted RBP18.49■□□□□ 0.55
MSL3-217ENST00000494268 TRHP20396 242 aaPredicted RBP18.46■□□□□ 0.55
MSL3-217ENST00000494268 ZNF219Q9P2Y4 722 aaPredicted RBP18.37■□□□□ 0.53
MSL3-217ENST00000494268 ABCB7O75027 752 aa18.2■□□□□ 0.5
MSL3-217ENST00000494268 POLA2Q14181 598 aa18.19■□□□□ 0.5
MSL3-217ENST00000494268 DSG3P32926 999 aa18.18■□□□□ 0.5
MSL3-217ENST00000494268 MKRN4PQ13434 485 aaPredicted RBP17.87■□□□□ 0.45
MSL3-217ENST00000494268 FBLN2P98095 1184 aa17.78■□□□□ 0.44
MSL3-217ENST00000494268 ZBTB12Q9Y330 459 aaPredicted RBP17.76■□□□□ 0.43
MSL3-217ENST00000494268 FKBP8Q14318 412 aa17.6■□□□□ 0.41
MSL3-217ENST00000494268 OSCARQ8IYS5 282 aa17.55■□□□□ 0.4
MSL3-217ENST00000494268 SPDYE4A6NLX3 237 aa17.47■□□□□ 0.39
MSL3-217ENST00000494268 SPDYE2BA6NHP3 402 aa17.34■□□□□ 0.37
MSL3-217ENST00000494268 SPDYE6P0CI01 402 aa17.34■□□□□ 0.37
MSL3-217ENST00000494268 SPDYE2Q495Y8 402 aa17.34■□□□□ 0.37
MSL3-217ENST00000494268 ZNF692Q9BU19 519 aaPredicted RBP17.34■□□□□ 0.37
MSL3-217ENST00000494268 SSUH2Q9Y2M2 353 aa17.24■□□□□ 0.35
MSL3-217ENST00000494268 RBM42Q9BTD8 480 aaKnown RBP17.22■□□□□ 0.35
MSL3-217ENST00000494268 PROM2Q8N271 834 aa17.16■□□□□ 0.34
MSL3-217ENST00000494268 PABPN1Q86U42 306 aaKnown RBP eCLIP17.13■□□□□ 0.33
MSL3-217ENST00000494268 AKT1S1Q96B36 256 aa17.07■□□□□ 0.32
MSL3-217ENST00000494268 REM2Q8IYK8 340 aaPredicted RBP16.96■□□□□ 0.31
MSL3-217ENST00000494268 FBXO3Q9UK99 471 aa16.86■□□□□ 0.29
MSL3-217ENST00000494268 SPDYE1Q8NFV5 336 aaPredicted RBP16.81■□□□□ 0.28
MSL3-217ENST00000494268 CLEC11AQ9Y240 323 aa16.8■□□□□ 0.28
MSL3-217ENST00000494268 STAG3Q9UJ98 1225 aa16.78■□□□□ 0.28
MSL3-217ENST00000494268 PITPNM1O00562 1244 aa16.77■□□□□ 0.28
MSL3-217ENST00000494268 VASPP50552 380 aaPredicted RBP16.68■□□□□ 0.26
MSL3-217ENST00000494268 PRR29P0C7W0 189 aa16.64■□□□□ 0.25
MSL3-217ENST00000494268 MIER1Q8N108 512 aa16.58■□□□□ 0.24
MSL3-217ENST00000494268 CHRDL2Q6WN34 429 aa16.54■□□□□ 0.24
MSL3-217ENST00000494268 PLCD3Q8N3E9 789 aa16.53■□□□□ 0.24
MSL3-217ENST00000494268 IFNLR1Q8IU57 520 aaPredicted RBP16.52■□□□□ 0.24
MSL3-217ENST00000494268 CREBZFQ9NS37 354 aa16.47■□□□□ 0.23
MSL3-217ENST00000494268 FXR2P51116 673 aaKnown RBP eCLIP16.42■□□□□ 0.22
MSL3-217ENST00000494268 CHADLQ6NUI6 762 aa16.41■□□□□ 0.22
MSL3-217ENST00000494268 KLHL34Q8N239 644 aa16.39■□□□□ 0.21
MSL3-217ENST00000494268 PIP4P2Q8N4L2 257 aa16.38■□□□□ 0.21
MSL3-217ENST00000494268 PLEKHG5O94827 1062 aa16.37■□□□□ 0.21
MSL3-217ENST00000494268 PRKAR2AP13861 404 aaKnown RBP16.34■□□□□ 0.21
MSL3-217ENST00000494268 MNX1P50219 401 aaPredicted RBP16.32■□□□□ 0.2
MSL3-217ENST00000494268 ZBTB47Q9UFB7 747 aaPredicted RBP16.26■□□□□ 0.19
MSL3-217ENST00000494268 SPOCK2Q92563 424 aa16.24■□□□□ 0.19
MSL3-217ENST00000494268 FARP1Q9Y4F1 1045 aaPredicted RBP16.22■□□□□ 0.19
MSL3-217ENST00000494268 RTN4Q9NQC3 1192 aaKnown RBP16.19■□□□□ 0.18
MSL3-217ENST00000494268 NUBP1P53384 320 aa16.13■□□□□ 0.17
MSL3-217ENST00000494268 NPM1P06748 294 aaKnown RBP eCLIP16.12■□□□□ 0.17
MSL3-217ENST00000494268 AMER1Q5JTC6 1135 aaPredicted RBP16.12■□□□□ 0.17
MSL3-217ENST00000494268 POTEHQ6S545 545 aa16.11■□□□□ 0.17
MSL3-217ENST00000494268 RASEFQ8IZ41 740 aa16.07■□□□□ 0.16
MSL3-217ENST00000494268 CIZ1Q9ULV3 898 aaPredicted RBP16.01■□□□□ 0.15
MSL3-217ENST00000494268 PKD2Q13563 968 aa16■□□□□ 0.15
MSL3-217ENST00000494268 DCAF8Q5TAQ9 597 aa16■□□□□ 0.15
MSL3-217ENST00000494268 TSPYL2Q9H2G4 693 aaPredicted RBP15.95■□□□□ 0.14
MSL3-217ENST00000494268 FAM212AQ96EL1 285 aa15.94■□□□□ 0.14
MSL3-217ENST00000494268 GSE1Q14687 1217 aa15.92■□□□□ 0.14
MSL3-217ENST00000494268 CD44P16070 742 aaKnown RBP15.87■□□□□ 0.13
MSL3-217ENST00000494268 C19orf67A6NJJ6 358 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms