RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 DCAF8L2P0C7V8 631 aa33.96■■■■□ 3.03
RNF40-203ENST00000493683 SUPT5HO00267 1087 aaKnown RBP32.46■■■□□ 2.79
RNF40-203ENST00000493683 PELP1Q8IZL8 1130 aaKnown RBP32.29■■■□□ 2.76
RNF40-203ENST00000493683 NISCHQ9Y2I1 1504 aa32.13■■■□□ 2.73
RNF40-203ENST00000493683 SHROOM4Q9ULL8 1493 aa31.57■■■□□ 2.64
RNF40-203ENST00000493683 APLP2Q06481 763 aa31.46■■■□□ 2.63
RNF40-203ENST00000493683 EHMT2Q96KQ7 1210 aa31.2■■■□□ 2.59
RNF40-203ENST00000493683 FAM9AQ8IZU1 332 aaPredicted RBP30.96■■■□□ 2.55
RNF40-203ENST00000493683 ZEB1P37275 1124 aaPredicted RBP30.88■■■□□ 2.53
RNF40-203ENST00000493683 CENPBP07199 599 aaPredicted RBP30.87■■■□□ 2.53
RNF40-203ENST00000493683 CCER1Q8TC90 406 aaPredicted RBP30.8■■■□□ 2.52
RNF40-203ENST00000493683 PCGF6Q9BYE7 350 aa30.69■■■□□ 2.5
RNF40-203ENST00000493683 ERICH6Q7L0X2 663 aa30.69■■■□□ 2.5
RNF40-203ENST00000493683 MYT1Q01538 1121 aa30.46■■■□□ 2.47
RNF40-203ENST00000493683 TTBK1Q5TCY1 1321 aaPredicted RBP30.3■■■□□ 2.44
RNF40-203ENST00000493683 TRIM41Q8WV44 630 aa30.25■■■□□ 2.43
RNF40-203ENST00000493683 NEFLP07196 543 aa30.18■■■□□ 2.42
RNF40-203ENST00000493683 UBTFP17480 764 aaKnown RBP29.91■■■□□ 2.38
RNF40-203ENST00000493683 RANGAP1P46060 587 aaPredicted RBP29.9■■■□□ 2.38
RNF40-203ENST00000493683 ATP1B4Q9UN42 357 aaPredicted RBP29.86■■■□□ 2.37
RNF40-203ENST00000493683 YTHDC1Q96MU7 727 aaKnown RBP29.64■■■□□ 2.34
RNF40-203ENST00000493683 TRIM26Q12899 539 aaPredicted RBP29.6■■■□□ 2.33
RNF40-203ENST00000493683 DAXXQ9UER7 740 aaPredicted RBP29.36■■■□□ 2.29
RNF40-203ENST00000493683 HRCP23327 699 aa29.32■■■□□ 2.28
RNF40-203ENST00000493683 PPARGC1BQ86YN6 1023 aaKnown RBP29.07■■■□□ 2.24
RNF40-203ENST00000493683 ITGAEP38570 1179 aa28.86■■■□□ 2.21
RNF40-203ENST00000493683 MYT1LQ9UL68 1186 aa28.84■■■□□ 2.21
RNF40-203ENST00000493683 POLR3GLQ9BT43 218 aa28.84■■■□□ 2.21
RNF40-203ENST00000493683 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.81■■■□□ 2.2
RNF40-203ENST00000493683 HNRNPUL2Q1KMD3 747 aaKnown RBP28.81■■■□□ 2.2
RNF40-203ENST00000493683 CHIC1Q5VXU3 224 aa28.79■■■□□ 2.2
RNF40-203ENST00000493683 RTL5Q5HYW3 569 aaPredicted RBP28.75■■■□□ 2.19
RNF40-203ENST00000493683 LOC105371045A0A1W2PR82 267 aa28.64■■■□□ 2.18
RNF40-203ENST00000493683 ZNF316A6NFI3 1004 aaPredicted RBP28.63■■■□□ 2.17
RNF40-203ENST00000493683 DIEXFQ68CQ4 756 aaKnown RBP28.62■■■□□ 2.17
RNF40-203ENST00000493683 CLSPNQ9HAW4 1339 aa28.49■■■□□ 2.15
RNF40-203ENST00000493683 CNGB1Q14028 1251 aaPredicted RBP28.33■■■□□ 2.13
RNF40-203ENST00000493683 SLC4A1APQ9BWU0 796 aaKnown RBP28.3■■■□□ 2.12
RNF40-203ENST00000493683 FAM50AQ14320 339 aaKnown RBP28.24■■■□□ 2.11
RNF40-203ENST00000493683 ANP32CO43423 234 aa28.18■■■□□ 2.1
RNF40-203ENST00000493683 CDK11AQ9UQ88 783 aaPredicted RBP28.16■■■□□ 2.1
RNF40-203ENST00000493683 TRIM52Q96A61 297 aa28.16■■■□□ 2.1
RNF40-203ENST00000493683 GTF3C3Q9Y5Q9 886 aa28.05■■■□□ 2.08
RNF40-203ENST00000493683 ZBTB47Q9UFB7 747 aaPredicted RBP28.03■■■□□ 2.08
RNF40-203ENST00000493683 NEUROD1Q13562 356 aa28.01■■■□□ 2.07
RNF40-203ENST00000493683 BCANQ96GW7 911 aa27.9■■■□□ 2.06
RNF40-203ENST00000493683 CANXP27824 592 aaKnown RBP27.76■■■□□ 2.03
RNF40-203ENST00000493683 ANP32AP39687 249 aaKnown RBP27.75■■■□□ 2.03
RNF40-203ENST00000493683 ZNF326Q5BKZ1 582 aaKnown RBP27.74■■■□□ 2.03
RNF40-203ENST00000493683 ACIN1Q9UKV3 1341 aaKnown RBP27.74■■■□□ 2.03
RNF40-203ENST00000493683 NEFMP07197 916 aa27.72■■■□□ 2.03
RNF40-203ENST00000493683 PABPN1Q86U42 306 aaKnown RBP eCLIP27.6■■■□□ 2.014e-10■■■■□ 20
RNF40-203ENST00000493683 ABCC9O60706 1549 aa27.54■■■□□ 2
RNF40-203ENST00000493683 CSRNP3Q8WYN3 585 aa27.49■■□□□ 1.99
RNF40-203ENST00000493683 FBLN2P98095 1184 aa27.46■■□□□ 1.99
RNF40-203ENST00000493683 ANP32BQ92688 251 aaKnown RBP27.45■■□□□ 1.98
RNF40-203ENST00000493683 UPF2Q9HAU5 1272 aaKnown RBP27.33■■□□□ 1.97
RNF40-203ENST00000493683 SLC24A1O60721 1099 aa27.31■■□□□ 1.96
RNF40-203ENST00000493683 TONSLQ96HA7 1378 aa27.31■■□□□ 1.96
RNF40-203ENST00000493683 NPM2Q86SE8 214 aaKnown RBP27.27■■□□□ 1.96
RNF40-203ENST00000493683 FKBP8Q14318 412 aa27.25■■□□□ 1.95
RNF40-203ENST00000493683 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
RNF40-203ENST00000493683 HSP90AA1P07900 732 aaKnown RBP27.21■■□□□ 1.95
RNF40-203ENST00000493683 BCL11AQ9H165 835 aa27.17■■□□□ 1.94
RNF40-203ENST00000493683 P3H3Q8IVL6 736 aa27.16■■□□□ 1.94
RNF40-203ENST00000493683 GLIPR1L2Q4G1C9 344 aa27.16■■□□□ 1.94
RNF40-203ENST00000493683 HNRNPUQ00839 825 aaKnown RBP eCLIP27.15■■□□□ 1.94
RNF40-203ENST00000493683 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.13■■□□□ 1.93
RNF40-203ENST00000493683 ZNF777Q9ULD5 760 aaPredicted RBP27.12■■□□□ 1.93
RNF40-203ENST00000493683 ESF1Q9H501 851 aaKnown RBP27.09■■□□□ 1.93
RNF40-203ENST00000493683 EIF5BO60841 1220 aaKnown RBP27.06■■□□□ 1.92
RNF40-203ENST00000493683 CCDC136Q96JN2 1154 aa27■■□□□ 1.91
RNF40-203ENST00000493683 DDX10Q13206 875 aaKnown RBP26.98■■□□□ 1.91
RNF40-203ENST00000493683 FAM9BQ8IZU0 186 aa26.98■■□□□ 1.91
RNF40-203ENST00000493683 ARID3CA6NKF2 412 aa26.98■■□□□ 1.91
RNF40-203ENST00000493683 TMC1Q8TDI8 760 aa26.95■■□□□ 1.91
RNF40-203ENST00000493683 STAG3Q9UJ98 1225 aa26.88■■□□□ 1.89
RNF40-203ENST00000493683 WDR43Q15061 677 aaKnown RBP eCLIP26.87■■□□□ 1.89
RNF40-203ENST00000493683 NPM1P06748 294 aaKnown RBP eCLIP26.87■■□□□ 1.89
RNF40-203ENST00000493683 CHGAP10645 457 aaKnown RBP26.81■■□□□ 1.88
RNF40-203ENST00000493683 MRS2Q9HD23 443 aa26.8■■□□□ 1.88
RNF40-203ENST00000493683 ANP32EQ9BTT0 268 aa26.76■■□□□ 1.87
RNF40-203ENST00000493683 DDRGK1Q96HY6 314 aa26.75■■□□□ 1.87
RNF40-203ENST00000493683 MYH16Q9H6N6 1097 aa26.71■■□□□ 1.87
RNF40-203ENST00000493683 NBR1Q14596 966 aa26.7■■□□□ 1.86
RNF40-203ENST00000493683 TSPY4P0CV99 314 aa26.69■■□□□ 1.86
RNF40-203ENST00000493683 TSPY10P0CW01 314 aa26.69■■□□□ 1.86
RNF40-203ENST00000493683 BECN1Q14457 450 aa26.68■■□□□ 1.86
RNF40-203ENST00000493683 SALL2Q9Y467 1007 aaPredicted RBP26.67■■□□□ 1.86
RNF40-203ENST00000493683 SCRIBQ14160 1630 aa26.67■■□□□ 1.86
RNF40-203ENST00000493683 EIF4G2P78344 907 aaKnown RBP eCLIP26.65■■□□□ 1.86
RNF40-203ENST00000493683 MTUS2Q5JR59 1369 aa26.64■■□□□ 1.86
RNF40-203ENST00000493683 CHIC2Q9UKJ5 165 aa26.6■■□□□ 1.85
RNF40-203ENST00000493683 ZCCHC6Q5VYS8 1495 aaKnown RBP26.59■■□□□ 1.85
RNF40-203ENST00000493683 MIER1Q8N108 512 aa26.57■■□□□ 1.84
RNF40-203ENST00000493683 CLIP1P30622 1438 aa26.55■■□□□ 1.84
RNF40-203ENST00000493683 EEA1Q15075 1411 aa26.55■■□□□ 1.84
RNF40-203ENST00000493683 GOLGA6L22H0YM25 854 aa26.54■■□□□ 1.84
RNF40-203ENST00000493683 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.54■■□□□ 1.846e-7■■□□□ 13.6
RNF40-203ENST00000493683 NCLP19338 710 aaKnown RBP26.53■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms