RNA–Protein interactions for RNA: ENST00000491258.1

PHC3-213, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best)

Gene PHC3, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-213ENST00000491258 AEBP2Q6ZN18 517 aaPredicted RBP31.05■■■□□ 2.56
PHC3-213ENST00000491258 CHIC1Q5VXU3 224 aa29.2■■■□□ 2.26
PHC3-213ENST00000491258 SENP3Q9H4L4 574 aaPredicted RBP26.52■■□□□ 1.84
PHC3-213ENST00000491258 PHF23Q9BUL5 403 aaPredicted RBP26.08■■□□□ 1.77
PHC3-213ENST00000491258 FOXD1Q16676 465 aa24.78■■□□□ 1.56
PHC3-213ENST00000491258 POTEDQ86YR6 584 aa23.57■■□□□ 1.36
PHC3-213ENST00000491258 PLPPR3Q6T4P5 718 aa23.38■■□□□ 1.33
PHC3-213ENST00000491258 MSH5O43196 834 aa23.35■■□□□ 1.33
PHC3-213ENST00000491258 PIAS4Q8N2W9 510 aaPredicted RBP23.01■■□□□ 1.27
PHC3-213ENST00000491258 PPP6R1Q9UPN7 881 aa22.84■■□□□ 1.25
PHC3-213ENST00000491258 ADRA2BP18089 450 aa22.81■■□□□ 1.24
PHC3-213ENST00000491258 DMRT2Q9Y5R5 561 aa20.98■□□□□ 0.95
PHC3-213ENST00000491258 MAPK8IP2Q13387 824 aaPredicted RBP20.97■□□□□ 0.95
PHC3-213ENST00000491258 SCAF1Q9H7N4 1312 aaKnown RBP20.87■□□□□ 0.93
PHC3-213ENST00000491258 PPP4R3CPQ6ZMV5 832 aa20.52■□□□□ 0.88
PHC3-213ENST00000491258 CACNB1Q02641 598 aaPredicted RBP20.26■□□□□ 0.83
PHC3-213ENST00000491258 CNKSR2Q8WXI2 1034 aa20.1■□□□□ 0.81
PHC3-213ENST00000491258 HOXD11P31277 338 aaPredicted RBP20.05■□□□□ 0.8
PHC3-213ENST00000491258 DCAF8L1A6NGE4 600 aa20.01■□□□□ 0.79
PHC3-213ENST00000491258 RNF39Q9H2S5 420 aa19.92■□□□□ 0.78
PHC3-213ENST00000491258 RNF216Q9NWF9 866 aaPredicted RBP19.88■□□□□ 0.77
PHC3-213ENST00000491258 NCBP3Q53F19 620 aaKnown RBP19.76■□□□□ 0.75
PHC3-213ENST00000491258 C1QBPQ07021 282 aaKnown RBP19.57■□□□□ 0.72
PHC3-213ENST00000491258 DNAJC5BQ9UF47 199 aa19.48■□□□□ 0.71
PHC3-213ENST00000491258 NPM3O75607 178 aaKnown RBP19.45■□□□□ 0.7
PHC3-213ENST00000491258 KCNA4P22459 653 aa19.16■□□□□ 0.66
PHC3-213ENST00000491258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.14■□□□□ 0.654e-8■■□□□ 12.6
PHC3-213ENST00000491258 U3KPZ7 1027 aaPredicted RBP18.7■□□□□ 0.58
PHC3-213ENST00000491258 SLC4A2P04920 1241 aa18.54■□□□□ 0.56
PHC3-213ENST00000491258 DSG3P32926 999 aa18.48■□□□□ 0.55
PHC3-213ENST00000491258 SPINK5Q9NQ38 1064 aaPredicted RBP18.47■□□□□ 0.55
PHC3-213ENST00000491258 CAPN15O75808 1086 aa18.43■□□□□ 0.54
PHC3-213ENST00000491258 POTEHQ6S545 545 aa18.37■□□□□ 0.53
PHC3-213ENST00000491258 APLP2Q06481 763 aa18.21■□□□□ 0.51
PHC3-213ENST00000491258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.19■□□□□ 0.5
PHC3-213ENST00000491258 HNRNPUL2Q1KMD3 747 aaKnown RBP18.19■□□□□ 0.5
PHC3-213ENST00000491258 TRHP20396 242 aaPredicted RBP18.15■□□□□ 0.5
PHC3-213ENST00000491258 SLC4A1APQ9BWU0 796 aaKnown RBP18.12■□□□□ 0.49
PHC3-213ENST00000491258 SAMD1Q6SPF0 538 aaPredicted RBP18.09■□□□□ 0.49
PHC3-213ENST00000491258 ZNF219Q9P2Y4 722 aaPredicted RBP18.08■□□□□ 0.48
PHC3-213ENST00000491258 ABCB7O75027 752 aa18.02■□□□□ 0.48
PHC3-213ENST00000491258 MYCNP04198 464 aaPredicted RBP18.01■□□□□ 0.47
PHC3-213ENST00000491258 FOXD4L1Q9NU39 408 aa17.85■□□□□ 0.45
PHC3-213ENST00000491258 POLA2Q14181 598 aa17.64■□□□□ 0.41
PHC3-213ENST00000491258 RBM42Q9BTD8 480 aaKnown RBP17.61■□□□□ 0.41
PHC3-213ENST00000491258 ZBTB22O15209 634 aa17.59■□□□□ 0.41
PHC3-213ENST00000491258 ATF5Q9Y2D1 282 aaPredicted RBP17.58■□□□□ 0.4
PHC3-213ENST00000491258 CHRDL2Q6WN34 429 aa17.42■□□□□ 0.38
PHC3-213ENST00000491258 ZBTB12Q9Y330 459 aaPredicted RBP17.28■□□□□ 0.36
PHC3-213ENST00000491258 ATXN8OSP0DMR3 200 aa17.26■□□□□ 0.35
PHC3-213ENST00000491258 AKT1S1Q96B36 256 aa17.12■□□□□ 0.33
PHC3-213ENST00000491258 OSCARQ8IYS5 282 aa17.09■□□□□ 0.33
PHC3-213ENST00000491258 SP7Q8TDD2 431 aaPredicted RBP17.02■□□□□ 0.32
PHC3-213ENST00000491258 REM2Q8IYK8 340 aaPredicted RBP16.96■□□□□ 0.31
PHC3-213ENST00000491258 PIP4P2Q8N4L2 257 aa16.93■□□□□ 0.3
PHC3-213ENST00000491258 FBLN2P98095 1184 aa16.92■□□□□ 0.3
PHC3-213ENST00000491258 CSRNP3Q8WYN3 585 aa16.85■□□□□ 0.29
PHC3-213ENST00000491258 PITPNM1O00562 1244 aa16.81■□□□□ 0.28
PHC3-213ENST00000491258 FXR2P51116 673 aaKnown RBP eCLIP16.77■□□□□ 0.28
PHC3-213ENST00000491258 SPDYE2BA6NHP3 402 aa16.75■□□□□ 0.27
PHC3-213ENST00000491258 SPDYE6P0CI01 402 aa16.75■□□□□ 0.27
PHC3-213ENST00000491258 MKRN4PQ13434 485 aaPredicted RBP16.75■□□□□ 0.27
PHC3-213ENST00000491258 SPDYE2Q495Y8 402 aa16.75■□□□□ 0.27
PHC3-213ENST00000491258 EHMT2Q96KQ7 1210 aa16.75■□□□□ 0.27
PHC3-213ENST00000491258 HAX1O00165 279 aa16.66■□□□□ 0.26
PHC3-213ENST00000491258 ZNF692Q9BU19 519 aaPredicted RBP16.59■□□□□ 0.25
PHC3-213ENST00000491258 SSUH2Q9Y2M2 353 aa16.51■□□□□ 0.23
PHC3-213ENST00000491258 EVX2Q03828 476 aa16.49■□□□□ 0.23
PHC3-213ENST00000491258 CLEC11AQ9Y240 323 aa16.48■□□□□ 0.23
PHC3-213ENST00000491258 SPDYE1Q8NFV5 336 aaPredicted RBP16.45■□□□□ 0.22
PHC3-213ENST00000491258 PABPN1Q86U42 306 aaKnown RBP eCLIP16.35■□□□□ 0.21
PHC3-213ENST00000491258 PRKAR2AP13861 404 aaKnown RBP16.33■□□□□ 0.2
PHC3-213ENST00000491258 C19orf67A6NJJ6 358 aa16.24■□□□□ 0.19
PHC3-213ENST00000491258 PRR29P0C7W0 189 aa16.18■□□□□ 0.18
PHC3-213ENST00000491258 CHADLQ6NUI6 762 aa16.14■□□□□ 0.17
PHC3-213ENST00000491258 GABBR2O75899 941 aa16.08■□□□□ 0.16
PHC3-213ENST00000491258 SPDYE4A6NLX3 237 aa16.04■□□□□ 0.16
PHC3-213ENST00000491258 LHX8Q68G74 356 aa15.92■□□□□ 0.14
PHC3-213ENST00000491258 STAG3Q9UJ98 1225 aa15.9■□□□□ 0.14
PHC3-213ENST00000491258 FARP1Q9Y4F1 1045 aaPredicted RBP15.86■□□□□ 0.13
PHC3-213ENST00000491258 CD44P16070 742 aaKnown RBP15.78■□□□□ 0.12
PHC3-213ENST00000491258 POTEIP0CG38 1075 aa15.77■□□□□ 0.12
PHC3-213ENST00000491258 CREBZFQ9NS37 354 aa15.77■□□□□ 0.12
PHC3-213ENST00000491258 CLCN6P51797 869 aa15.68■□□□□ 0.1
PHC3-213ENST00000491258 PROM2Q8N271 834 aa15.58■□□□□ 0.08
PHC3-213ENST00000491258 ZRANB1Q9UGI0 708 aa15.58■□□□□ 0.08
PHC3-213ENST00000491258 ZNF579Q8NAF0 562 aaKnown RBP15.57■□□□□ 0.08
PHC3-213ENST00000491258 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
PHC3-213ENST00000491258 DCBLD2Q96PD2 775 aa15.5■□□□□ 0.07
PHC3-213ENST00000491258 PAK3O75914 559 aaPredicted RBP15.48■□□□□ 0.07
PHC3-213ENST00000491258 MNX1P50219 401 aaPredicted RBP15.47■□□□□ 0.07
PHC3-213ENST00000491258 GALR2O43603 387 aaPredicted RBP15.38■□□□□ 0.05
PHC3-213ENST00000491258 PHF12Q96QT6 1004 aa15.36■□□□□ 0.05
PHC3-213ENST00000491258 FKBP8Q14318 412 aa15.33■□□□□ 0.04
PHC3-213ENST00000491258 PLEKHG5O94827 1062 aa15.31■□□□□ 0.04
PHC3-213ENST00000491258 MIER1Q8N108 512 aa15.31■□□□□ 0.04
PHC3-213ENST00000491258 OTUD5Q96G74 571 aa15.27■□□□□ 0.04
PHC3-213ENST00000491258 TSPYL2Q9H2G4 693 aaPredicted RBP15.26■□□□□ 0.03
PHC3-213ENST00000491258 POTEB2H3BUK9 544 aa15.24■□□□□ 0.03
PHC3-213ENST00000491258 PLCD3Q8N3E9 789 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms