RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 AEBP2Q6ZN18 517 aaPredicted RBP26.64■■□□□ 1.86
PRPF40A-210ENST00000489741 CHIC1Q5VXU3 224 aa25.8■■□□□ 1.72
PRPF40A-210ENST00000489741 SENP3Q9H4L4 574 aaPredicted RBP22.7■■□□□ 1.22
PRPF40A-210ENST00000489741 PHF23Q9BUL5 403 aaPredicted RBP22.64■■□□□ 1.21
PRPF40A-210ENST00000489741 FOXD1Q16676 465 aa21.06■□□□□ 0.96
PRPF40A-210ENST00000489741 PLPPR3Q6T4P5 718 aa20.88■□□□□ 0.93
PRPF40A-210ENST00000489741 ADRA2BP18089 450 aa20.06■□□□□ 0.8
PRPF40A-210ENST00000489741 PPP6R1Q9UPN7 881 aa20.06■□□□□ 0.8
PRPF40A-210ENST00000489741 PIAS4Q8N2W9 510 aaPredicted RBP19.86■□□□□ 0.77
PRPF40A-210ENST00000489741 MSH5O43196 834 aa19.56■□□□□ 0.72
PRPF40A-210ENST00000489741 SCAF1Q9H7N4 1312 aaKnown RBP18.4■□□□□ 0.54
PRPF40A-210ENST00000489741 PPP4R3CPQ6ZMV5 832 aa18.36■□□□□ 0.53
PRPF40A-210ENST00000489741 POTEDQ86YR6 584 aa18.33■□□□□ 0.52
PRPF40A-210ENST00000489741 MAPK8IP2Q13387 824 aaPredicted RBP18.26■□□□□ 0.51
PRPF40A-210ENST00000489741 DMRT2Q9Y5R5 561 aa18.06■□□□□ 0.48
PRPF40A-210ENST00000489741 CNKSR2Q8WXI2 1034 aa17.9■□□□□ 0.46
PRPF40A-210ENST00000489741 NCBP3Q53F19 620 aaKnown RBP17.85■□□□□ 0.45
PRPF40A-210ENST00000489741 KCNA4P22459 653 aa17.66■□□□□ 0.42
PRPF40A-210ENST00000489741 RNF216Q9NWF9 866 aaPredicted RBP17.6■□□□□ 0.41
PRPF40A-210ENST00000489741 HOXD11P31277 338 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-210ENST00000489741 NPM3O75607 178 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-210ENST00000489741 DCAF8L1A6NGE4 600 aa17.39■□□□□ 0.37
PRPF40A-210ENST00000489741 DNAJC5BQ9UF47 199 aa17■□□□□ 0.31
PRPF40A-210ENST00000489741 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.83■□□□□ 0.284e-10■■■□□ 16.6
PRPF40A-210ENST00000489741 SLC4A1APQ9BWU0 796 aaKnown RBP16.81■□□□□ 0.28
PRPF40A-210ENST00000489741 RNF39Q9H2S5 420 aa16.7■□□□□ 0.26
PRPF40A-210ENST00000489741 SLC4A2P04920 1241 aa16.59■□□□□ 0.25
PRPF40A-210ENST00000489741 CACNB1Q02641 598 aaPredicted RBP16.5■□□□□ 0.23
PRPF40A-210ENST00000489741 C1QBPQ07021 282 aaKnown RBP16.5■□□□□ 0.23
PRPF40A-210ENST00000489741 U3KPZ7 1027 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-210ENST00000489741 FOXD4L1Q9NU39 408 aa16.34■□□□□ 0.21
PRPF40A-210ENST00000489741 MYCNP04198 464 aaPredicted RBP16.24■□□□□ 0.19
PRPF40A-210ENST00000489741 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.23■□□□□ 0.19
PRPF40A-210ENST00000489741 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-210ENST00000489741 ZBTB22O15209 634 aa16.22■□□□□ 0.19
PRPF40A-210ENST00000489741 SAMD1Q6SPF0 538 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-210ENST00000489741 APLP2Q06481 763 aa16.13■□□□□ 0.17
PRPF40A-210ENST00000489741 CAPN15O75808 1086 aa16.09■□□□□ 0.17
PRPF40A-210ENST00000489741 EHMT2Q96KQ7 1210 aa16.09■□□□□ 0.17
PRPF40A-210ENST00000489741 SPINK5Q9NQ38 1064 aaPredicted RBP16.09■□□□□ 0.17
PRPF40A-210ENST00000489741 NISCHQ9Y2I1 1504 aa15.95■□□□□ 0.14
PRPF40A-210ENST00000489741 TRHP20396 242 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-210ENST00000489741 CSRNP3Q8WYN3 585 aa15.93■□□□□ 0.14
PRPF40A-210ENST00000489741 ZNF219Q9P2Y4 722 aaPredicted RBP15.93■□□□□ 0.14
PRPF40A-210ENST00000489741 DSG3P32926 999 aa15.81■□□□□ 0.12
PRPF40A-210ENST00000489741 ATF5Q9Y2D1 282 aaPredicted RBP15.78■□□□□ 0.12
PRPF40A-210ENST00000489741 ATXN8OSP0DMR3 200 aa15.77■□□□□ 0.12
PRPF40A-210ENST00000489741 ABCB7O75027 752 aa15.75■□□□□ 0.11
PRPF40A-210ENST00000489741 POLA2Q14181 598 aa15.61■□□□□ 0.09
PRPF40A-210ENST00000489741 ZBTB12Q9Y330 459 aaPredicted RBP15.37■□□□□ 0.05
PRPF40A-210ENST00000489741 FBLN2P98095 1184 aa15.21■□□□□ 0.03
PRPF40A-210ENST00000489741 RBM42Q9BTD8 480 aaKnown RBP15.12■□□□□ 0.01
PRPF40A-210ENST00000489741 OSCARQ8IYS5 282 aa15.11■□□□□ 0.01
PRPF40A-210ENST00000489741 MKRN4PQ13434 485 aaPredicted RBP15.08■□□□□ 0
PRPF40A-210ENST00000489741 SPDYE2BA6NHP3 402 aa14.9□□□□□ -0.02
PRPF40A-210ENST00000489741 SPDYE6P0CI01 402 aa14.9□□□□□ -0.02
PRPF40A-210ENST00000489741 SPDYE2Q495Y8 402 aa14.9□□□□□ -0.02
PRPF40A-210ENST00000489741 AKT1S1Q96B36 256 aa14.86□□□□□ -0.03
PRPF40A-210ENST00000489741 ZNF692Q9BU19 519 aaPredicted RBP14.82□□□□□ -0.04
PRPF40A-210ENST00000489741 SSUH2Q9Y2M2 353 aa14.73□□□□□ -0.05
PRPF40A-210ENST00000489741 REM2Q8IYK8 340 aaPredicted RBP14.72□□□□□ -0.05
PRPF40A-210ENST00000489741 SPDYE4A6NLX3 237 aa14.68□□□□□ -0.06
PRPF40A-210ENST00000489741 PABPN1Q86U42 306 aaKnown RBP eCLIP14.62□□□□□ -0.07
PRPF40A-210ENST00000489741 CHRDL2Q6WN34 429 aa14.58□□□□□ -0.08
PRPF40A-210ENST00000489741 PITPNM1O00562 1244 aa14.56□□□□□ -0.08
PRPF40A-210ENST00000489741 SPDYE1Q8NFV5 336 aaPredicted RBP14.53□□□□□ -0.08
PRPF40A-210ENST00000489741 CLEC11AQ9Y240 323 aa14.51□□□□□ -0.09
PRPF40A-210ENST00000489741 FKBP8Q14318 412 aa14.48□□□□□ -0.09
PRPF40A-210ENST00000489741 POTEHQ6S545 545 aa14.38□□□□□ -0.11
PRPF40A-210ENST00000489741 PROM2Q8N271 834 aa14.33□□□□□ -0.12
PRPF40A-210ENST00000489741 PIP4P2Q8N4L2 257 aa14.33□□□□□ -0.12
PRPF40A-210ENST00000489741 STAG3Q9UJ98 1225 aa14.33□□□□□ -0.12
PRPF40A-210ENST00000489741 ABCC9O60706 1549 aa14.32□□□□□ -0.12
PRPF40A-210ENST00000489741 PRR29P0C7W0 189 aa14.32□□□□□ -0.12
PRPF40A-210ENST00000489741 FXR2P51116 673 aaKnown RBP eCLIP14.29□□□□□ -0.126e-9■■■□□ 17
PRPF40A-210ENST00000489741 CCDC180Q9P1Z9 1646 aa14.22□□□□□ -0.13
PRPF40A-210ENST00000489741 PRKAR2AP13861 404 aaKnown RBP14.2□□□□□ -0.14
PRPF40A-210ENST00000489741 CHADLQ6NUI6 762 aa14.15□□□□□ -0.14
PRPF40A-210ENST00000489741 CREBZFQ9NS37 354 aa14.04□□□□□ -0.16
PRPF40A-210ENST00000489741 FBXO3Q9UK99 471 aa14.04□□□□□ -0.16
PRPF40A-210ENST00000489741 FARP1Q9Y4F1 1045 aaPredicted RBP13.98□□□□□ -0.17
PRPF40A-210ENST00000489741 HAX1O00165 279 aa13.97□□□□□ -0.17
PRPF40A-210ENST00000489741 MIER1Q8N108 512 aa13.96□□□□□ -0.17
PRPF40A-210ENST00000489741 PLEKHG5O94827 1062 aa13.95□□□□□ -0.18
PRPF40A-210ENST00000489741 PLCD3Q8N3E9 789 aa13.94□□□□□ -0.18
PRPF40A-210ENST00000489741 NPM1P06748 294 aaKnown RBP eCLIP13.86□□□□□ -0.19
PRPF40A-210ENST00000489741 VASPP50552 380 aaPredicted RBP13.84□□□□□ -0.19
PRPF40A-210ENST00000489741 C19orf67A6NJJ6 358 aa13.83□□□□□ -0.2
PRPF40A-210ENST00000489741 MNX1P50219 401 aaPredicted RBP13.83□□□□□ -0.2
PRPF40A-210ENST00000489741 CD44P16070 742 aaKnown RBP13.79□□□□□ -0.2
PRPF40A-210ENST00000489741 ZBTB47Q9UFB7 747 aaPredicted RBP13.79□□□□□ -0.2
PRPF40A-210ENST00000489741 EVX2Q03828 476 aa13.75□□□□□ -0.21
PRPF40A-210ENST00000489741 PAK3O75914 559 aaPredicted RBP13.72□□□□□ -0.21
PRPF40A-210ENST00000489741 SP7Q8TDD2 431 aaPredicted RBP13.72□□□□□ -0.21
PRPF40A-210ENST00000489741 KLHL34Q8N239 644 aa13.7□□□□□ -0.22
PRPF40A-210ENST00000489741 ZRANB1Q9UGI0 708 aa13.67□□□□□ -0.22
PRPF40A-210ENST00000489741 TSPYL2Q9H2G4 693 aaPredicted RBP13.62□□□□□ -0.23
PRPF40A-210ENST00000489741 IFNLR1Q8IU57 520 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-210ENST00000489741 RASEFQ8IZ41 740 aa13.6□□□□□ -0.23
PRPF40A-210ENST00000489741 RB1CC1Q8TDY2 1594 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms