RNA–Protein interactions for RNA: ENST00000489049.5

PDCD4-209, Transcript of programmed cell death 4, humanhuman

TSL 2

Gene PDCD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD4-209ENST00000489049 AEBP2Q6ZN18 517 aaPredicted RBP26.22■■□□□ 1.79
PDCD4-209ENST00000489049 CHIC1Q5VXU3 224 aa24.96■■□□□ 1.59
PDCD4-209ENST00000489049 SENP3Q9H4L4 574 aaPredicted RBP22.35■■□□□ 1.17
PDCD4-209ENST00000489049 PHF23Q9BUL5 403 aaPredicted RBP22.06■■□□□ 1.12
PDCD4-209ENST00000489049 FOXD1Q16676 465 aa20.82■□□□□ 0.92
PDCD4-209ENST00000489049 PLPPR3Q6T4P5 718 aa19.97■□□□□ 0.79
PDCD4-209ENST00000489049 PPP6R1Q9UPN7 881 aa19.51■□□□□ 0.71
PDCD4-209ENST00000489049 PIAS4Q8N2W9 510 aaPredicted RBP19.47■□□□□ 0.71
PDCD4-209ENST00000489049 MSH5O43196 834 aa19.46■□□□□ 0.71
PDCD4-209ENST00000489049 ADRA2BP18089 450 aa19.45■□□□□ 0.7
PDCD4-209ENST00000489049 POTEDQ86YR6 584 aa18.88■□□□□ 0.61
PDCD4-209ENST00000489049 MAPK8IP2Q13387 824 aaPredicted RBP17.85■□□□□ 0.45
PDCD4-209ENST00000489049 SCAF1Q9H7N4 1312 aaKnown RBP17.8■□□□□ 0.44
PDCD4-209ENST00000489049 DMRT2Q9Y5R5 561 aa17.73■□□□□ 0.43
PDCD4-209ENST00000489049 PPP4R3CPQ6ZMV5 832 aa17.51■□□□□ 0.39
PDCD4-209ENST00000489049 CNKSR2Q8WXI2 1034 aa17.17■□□□□ 0.34
PDCD4-209ENST00000489049 HOXD11P31277 338 aaPredicted RBP17.11■□□□□ 0.33
PDCD4-209ENST00000489049 RNF216Q9NWF9 866 aaPredicted RBP17■□□□□ 0.31
PDCD4-209ENST00000489049 DCAF8L1A6NGE4 600 aa16.98■□□□□ 0.31
PDCD4-209ENST00000489049 NCBP3Q53F19 620 aaKnown RBP16.85■□□□□ 0.29
PDCD4-209ENST00000489049 CACNB1Q02641 598 aaPredicted RBP16.65■□□□□ 0.26
PDCD4-209ENST00000489049 NPM3O75607 178 aaKnown RBP16.62■□□□□ 0.25
PDCD4-209ENST00000489049 RNF39Q9H2S5 420 aa16.61■□□□□ 0.25
PDCD4-209ENST00000489049 DNAJC5BQ9UF47 199 aa16.52■□□□□ 0.24
PDCD4-209ENST00000489049 C1QBPQ07021 282 aaKnown RBP16.37■□□□□ 0.21
PDCD4-209ENST00000489049 KCNA4P22459 653 aa16.36■□□□□ 0.21
PDCD4-209ENST00000489049 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.28■□□□□ 0.2
PDCD4-209ENST00000489049 U3KPZ7 1027 aaPredicted RBP15.98■□□□□ 0.15
PDCD4-209ENST00000489049 SLC4A2P04920 1241 aa15.86■□□□□ 0.13
PDCD4-209ENST00000489049 SPINK5Q9NQ38 1064 aaPredicted RBP15.71■□□□□ 0.11
PDCD4-209ENST00000489049 CAPN15O75808 1086 aa15.68■□□□□ 0.1
PDCD4-209ENST00000489049 DSG3P32926 999 aa15.58■□□□□ 0.08
PDCD4-209ENST00000489049 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.53■□□□□ 0.08
PDCD4-209ENST00000489049 HNRNPUL2Q1KMD3 747 aaKnown RBP15.53■□□□□ 0.08
PDCD4-209ENST00000489049 APLP2Q06481 763 aa15.52■□□□□ 0.08
PDCD4-209ENST00000489049 SLC4A1APQ9BWU0 796 aaKnown RBP15.45■□□□□ 0.06
PDCD4-209ENST00000489049 TRHP20396 242 aaPredicted RBP15.44■□□□□ 0.06
PDCD4-209ENST00000489049 SAMD1Q6SPF0 538 aaPredicted RBP15.44■□□□□ 0.06
PDCD4-209ENST00000489049 ZNF219Q9P2Y4 722 aaPredicted RBP15.43■□□□□ 0.06
PDCD4-209ENST00000489049 MYCNP04198 464 aaPredicted RBP15.37■□□□□ 0.05
PDCD4-209ENST00000489049 ABCB7O75027 752 aa15.32■□□□□ 0.04
PDCD4-209ENST00000489049 FOXD4L1Q9NU39 408 aa15.25■□□□□ 0.03
PDCD4-209ENST00000489049 ZBTB22O15209 634 aa15.04■□□□□ -0
PDCD4-209ENST00000489049 POLA2Q14181 598 aa15.03■□□□□ -0
PDCD4-209ENST00000489049 ATF5Q9Y2D1 282 aaPredicted RBP15.01□□□□□ -0.01
PDCD4-209ENST00000489049 RBM42Q9BTD8 480 aaKnown RBP14.86□□□□□ -0.03
PDCD4-209ENST00000489049 POTEHQ6S545 545 aa14.81□□□□□ -0.04
PDCD4-209ENST00000489049 ATXN8OSP0DMR3 200 aa14.77□□□□□ -0.05
PDCD4-209ENST00000489049 ZBTB12Q9Y330 459 aaPredicted RBP14.75□□□□□ -0.05
PDCD4-209ENST00000489049 OSCARQ8IYS5 282 aa14.57□□□□□ -0.08
PDCD4-209ENST00000489049 AKT1S1Q96B36 256 aa14.54□□□□□ -0.08
PDCD4-209ENST00000489049 CHRDL2Q6WN34 429 aa14.5□□□□□ -0.09
PDCD4-209ENST00000489049 FBLN2P98095 1184 aa14.41□□□□□ -0.1
PDCD4-209ENST00000489049 CSRNP3Q8WYN3 585 aa14.41□□□□□ -0.1
PDCD4-209ENST00000489049 REM2Q8IYK8 340 aaPredicted RBP14.4□□□□□ -0.1
PDCD4-209ENST00000489049 NISCHQ9Y2I1 1504 aa14.39□□□□□ -0.11
PDCD4-209ENST00000489049 MKRN4PQ13434 485 aaPredicted RBP14.32□□□□□ -0.12
PDCD4-209ENST00000489049 SPDYE2BA6NHP3 402 aa14.3□□□□□ -0.12
PDCD4-209ENST00000489049 SPDYE6P0CI01 402 aa14.3□□□□□ -0.12
PDCD4-209ENST00000489049 SPDYE2Q495Y8 402 aa14.3□□□□□ -0.12
PDCD4-209ENST00000489049 PITPNM1O00562 1244 aa14.25□□□□□ -0.13
PDCD4-209ENST00000489049 EHMT2Q96KQ7 1210 aa14.25□□□□□ -0.13
PDCD4-209ENST00000489049 PIP4P2Q8N4L2 257 aa14.18□□□□□ -0.14
PDCD4-209ENST00000489049 ZNF692Q9BU19 519 aaPredicted RBP14.13□□□□□ -0.15
PDCD4-209ENST00000489049 SSUH2Q9Y2M2 353 aa14.13□□□□□ -0.15
PDCD4-209ENST00000489049 FXR2P51116 673 aaKnown RBP eCLIP14.12□□□□□ -0.15
PDCD4-209ENST00000489049 SPDYE1Q8NFV5 336 aaPredicted RBP14.03□□□□□ -0.16
PDCD4-209ENST00000489049 CLEC11AQ9Y240 323 aa14□□□□□ -0.17
PDCD4-209ENST00000489049 PABPN1Q86U42 306 aaKnown RBP eCLIP13.93□□□□□ -0.18
PDCD4-209ENST00000489049 SP7Q8TDD2 431 aaPredicted RBP13.92□□□□□ -0.18
PDCD4-209ENST00000489049 HAX1O00165 279 aa13.89□□□□□ -0.19
PDCD4-209ENST00000489049 PRKAR2AP13861 404 aaKnown RBP13.87□□□□□ -0.19
PDCD4-209ENST00000489049 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
PDCD4-209ENST00000489049 EVX2Q03828 476 aa13.73□□□□□ -0.21
PDCD4-209ENST00000489049 CHADLQ6NUI6 762 aa13.73□□□□□ -0.21
PDCD4-209ENST00000489049 SPDYE4A6NLX3 237 aa13.67□□□□□ -0.22
PDCD4-209ENST00000489049 C19orf67A6NJJ6 358 aa13.66□□□□□ -0.22
PDCD4-209ENST00000489049 STAG3Q9UJ98 1225 aa13.56□□□□□ -0.24
PDCD4-209ENST00000489049 FARP1Q9Y4F1 1045 aaPredicted RBP13.53□□□□□ -0.24
PDCD4-209ENST00000489049 CREBZFQ9NS37 354 aa13.47□□□□□ -0.25
PDCD4-209ENST00000489049 CD44P16070 742 aaKnown RBP13.44□□□□□ -0.26
PDCD4-209ENST00000489049 GABBR2O75899 941 aa13.43□□□□□ -0.26
PDCD4-209ENST00000489049 PROM2Q8N271 834 aa13.38□□□□□ -0.27
PDCD4-209ENST00000489049 CLCN6P51797 869 aa13.25□□□□□ -0.29
PDCD4-209ENST00000489049 ZNF579Q8NAF0 562 aaKnown RBP13.25□□□□□ -0.29
PDCD4-209ENST00000489049 ZRANB1Q9UGI0 708 aa13.25□□□□□ -0.29
PDCD4-209ENST00000489049 MNX1P50219 401 aaPredicted RBP13.24□□□□□ -0.29
PDCD4-209ENST00000489049 NPM1P06748 294 aaKnown RBP eCLIP13.21□□□□□ -0.29
PDCD4-209ENST00000489049 PAK3O75914 559 aaPredicted RBP13.16□□□□□ -0.3
PDCD4-209ENST00000489049 POTEIP0CG38 1075 aa13.16□□□□□ -0.3
PDCD4-209ENST00000489049 GALR2O43603 387 aaPredicted RBP13.08□□□□□ -0.32
PDCD4-209ENST00000489049 DCBLD2Q96PD2 775 aa13.08□□□□□ -0.32
PDCD4-209ENST00000489049 PHF12Q96QT6 1004 aa13.08□□□□□ -0.32
PDCD4-209ENST00000489049 FKBP8Q14318 412 aa13.06□□□□□ -0.32
PDCD4-209ENST00000489049 LHX8Q68G74 356 aa13.04□□□□□ -0.32
PDCD4-209ENST00000489049 MIER1Q8N108 512 aa13.02□□□□□ -0.33
PDCD4-209ENST00000489049 PLEKHG5O94827 1062 aa13.01□□□□□ -0.33
PDCD4-209ENST00000489049 TSPYL2Q9H2G4 693 aaPredicted RBP12.97□□□□□ -0.33
PDCD4-209ENST00000489049 PLCD3Q8N3E9 789 aa12.94□□□□□ -0.34
PDCD4-209ENST00000489049 CCDC61Q9Y6R9 512 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms