RNA–Protein interactions for RNA: ENST00000489032.5

TRAPPC12-221, Transcript of trafficking protein particle complex 12, humanhuman

TSL 3

Gene TRAPPC12, Length 561 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC12-221ENST00000489032 AEBP2Q6ZN18 517 aaPredicted RBP29.99■■■□□ 2.39
TRAPPC12-221ENST00000489032 CHIC1Q5VXU3 224 aa29.74■■■□□ 2.35
TRAPPC12-221ENST00000489032 PHF23Q9BUL5 403 aaPredicted RBP26.11■■□□□ 1.77
TRAPPC12-221ENST00000489032 SENP3Q9H4L4 574 aaPredicted RBP25.56■■□□□ 1.68
TRAPPC12-221ENST00000489032 PLPPR3Q6T4P5 718 aa24.4■■□□□ 1.5
TRAPPC12-221ENST00000489032 FOXD1Q16676 465 aa23.58■■□□□ 1.37
TRAPPC12-221ENST00000489032 ADRA2BP18089 450 aa23■■□□□ 1.27
TRAPPC12-221ENST00000489032 PPP6R1Q9UPN7 881 aa22.93■■□□□ 1.26
TRAPPC12-221ENST00000489032 PIAS4Q8N2W9 510 aaPredicted RBP22.43■■□□□ 1.18
TRAPPC12-221ENST00000489032 MSH5O43196 834 aa21.72■■□□□ 1.07
TRAPPC12-221ENST00000489032 PPP4R3CPQ6ZMV5 832 aa21.51■■□□□ 1.03
TRAPPC12-221ENST00000489032 KCNA4P22459 653 aa21.37■■□□□ 1.01
TRAPPC12-221ENST00000489032 SCAF1Q9H7N4 1312 aaKnown RBP21.21■□□□□ 0.99
TRAPPC12-221ENST00000489032 NCBP3Q53F19 620 aaKnown RBP21.16■□□□□ 0.98
TRAPPC12-221ENST00000489032 CNKSR2Q8WXI2 1034 aa20.85■□□□□ 0.93
TRAPPC12-221ENST00000489032 MAPK8IP2Q13387 824 aaPredicted RBP20.73■□□□□ 0.91
TRAPPC12-221ENST00000489032 NPM3O75607 178 aaKnown RBP20.7■□□□□ 0.9
TRAPPC12-221ENST00000489032 SLC4A1APQ9BWU0 796 aaKnown RBP20.5■□□□□ 0.87
TRAPPC12-221ENST00000489032 DMRT2Q9Y5R5 561 aa20.4■□□□□ 0.86
TRAPPC12-221ENST00000489032 EHMT2Q96KQ7 1210 aa20.34■□□□□ 0.85
TRAPPC12-221ENST00000489032 RNF216Q9NWF9 866 aaPredicted RBP20.33■□□□□ 0.85
TRAPPC12-221ENST00000489032 HOXD11P31277 338 aaPredicted RBP20.1■□□□□ 0.81
TRAPPC12-221ENST00000489032 DNAJC5BQ9UF47 199 aa19.97■□□□□ 0.79
TRAPPC12-221ENST00000489032 CSRNP3Q8WYN3 585 aa19.84■□□□□ 0.77
TRAPPC12-221ENST00000489032 DCAF8L1A6NGE4 600 aa19.67■□□□□ 0.74
TRAPPC12-221ENST00000489032 FOXD4L1Q9NU39 408 aa19.62■□□□□ 0.73
TRAPPC12-221ENST00000489032 ZBTB22O15209 634 aa19.58■□□□□ 0.72
TRAPPC12-221ENST00000489032 SLC4A2P04920 1241 aa19.4■□□□□ 0.7
TRAPPC12-221ENST00000489032 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.3■□□□□ 0.682e-7■□□□□ 8
TRAPPC12-221ENST00000489032 MYCNP04198 464 aaPredicted RBP19.2■□□□□ 0.66
TRAPPC12-221ENST00000489032 POTEDQ86YR6 584 aa19.06■□□□□ 0.64
TRAPPC12-221ENST00000489032 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.95■□□□□ 0.62
TRAPPC12-221ENST00000489032 HNRNPUL2Q1KMD3 747 aaKnown RBP18.95■□□□□ 0.62
TRAPPC12-221ENST00000489032 ATXN8OSP0DMR3 200 aa18.91■□□□□ 0.62
TRAPPC12-221ENST00000489032 U3KPZ7 1027 aaPredicted RBP18.88■□□□□ 0.61
TRAPPC12-221ENST00000489032 NISCHQ9Y2I1 1504 aa18.87■□□□□ 0.61
TRAPPC12-221ENST00000489032 SAMD1Q6SPF0 538 aaPredicted RBP18.85■□□□□ 0.61
TRAPPC12-221ENST00000489032 APLP2Q06481 763 aa18.71■□□□□ 0.59
TRAPPC12-221ENST00000489032 RNF39Q9H2S5 420 aa18.56■□□□□ 0.56
TRAPPC12-221ENST00000489032 ATF5Q9Y2D1 282 aaPredicted RBP18.53■□□□□ 0.56
TRAPPC12-221ENST00000489032 C1QBPQ07021 282 aaKnown RBP18.43■□□□□ 0.54
TRAPPC12-221ENST00000489032 CAPN15O75808 1086 aa18.31■□□□□ 0.52
TRAPPC12-221ENST00000489032 ZNF219Q9P2Y4 722 aaPredicted RBP18.31■□□□□ 0.52
TRAPPC12-221ENST00000489032 TRHP20396 242 aaPredicted RBP18.3■□□□□ 0.52
TRAPPC12-221ENST00000489032 SPINK5Q9NQ38 1064 aaPredicted RBP18.27■□□□□ 0.52
TRAPPC12-221ENST00000489032 POLA2Q14181 598 aa18.04■□□□□ 0.48
TRAPPC12-221ENST00000489032 FKBP8Q14318 412 aa18.01■□□□□ 0.47
TRAPPC12-221ENST00000489032 FBLN2P98095 1184 aa17.94■□□□□ 0.46
TRAPPC12-221ENST00000489032 CACNB1Q02641 598 aaPredicted RBP17.94■□□□□ 0.46
TRAPPC12-221ENST00000489032 ABCB7O75027 752 aa17.93■□□□□ 0.46
TRAPPC12-221ENST00000489032 ZBTB12Q9Y330 459 aaPredicted RBP17.84■□□□□ 0.45
TRAPPC12-221ENST00000489032 ABCC9O60706 1549 aa17.82■□□□□ 0.44
TRAPPC12-221ENST00000489032 DSG3P32926 999 aa17.8■□□□□ 0.44
TRAPPC12-221ENST00000489032 MKRN4PQ13434 485 aaPredicted RBP17.74■□□□□ 0.43
TRAPPC12-221ENST00000489032 SPDYE4A6NLX3 237 aa17.65■□□□□ 0.42
TRAPPC12-221ENST00000489032 OSCARQ8IYS5 282 aa17.38■□□□□ 0.37
TRAPPC12-221ENST00000489032 ZNF692Q9BU19 519 aaPredicted RBP17.36■□□□□ 0.37
TRAPPC12-221ENST00000489032 FBXO3Q9UK99 471 aa17.35■□□□□ 0.37
TRAPPC12-221ENST00000489032 SPDYE2BA6NHP3 402 aa17.33■□□□□ 0.36
TRAPPC12-221ENST00000489032 SPDYE6P0CI01 402 aa17.33■□□□□ 0.36
TRAPPC12-221ENST00000489032 SPDYE2Q495Y8 402 aa17.33■□□□□ 0.36
TRAPPC12-221ENST00000489032 PROM2Q8N271 834 aa17.26■□□□□ 0.35
TRAPPC12-221ENST00000489032 CCDC180Q9P1Z9 1646 aa17.23■□□□□ 0.35
TRAPPC12-221ENST00000489032 SSUH2Q9Y2M2 353 aa17.14■□□□□ 0.33
TRAPPC12-221ENST00000489032 PABPN1Q86U42 306 aaKnown RBP eCLIP17.1■□□□□ 0.33
TRAPPC12-221ENST00000489032 AMER1Q5JTC6 1135 aaPredicted RBP17.08■□□□□ 0.32
TRAPPC12-221ENST00000489032 RBM42Q9BTD8 480 aaKnown RBP17.07■□□□□ 0.32
TRAPPC12-221ENST00000489032 VASPP50552 380 aaPredicted RBP17■□□□□ 0.31
TRAPPC12-221ENST00000489032 STAG3Q9UJ98 1225 aa16.97■□□□□ 0.31
TRAPPC12-221ENST00000489032 RTN4Q9NQC3 1192 aaKnown RBP16.93■□□□□ 0.3
TRAPPC12-221ENST00000489032 AKT1S1Q96B36 256 aa16.89■□□□□ 0.29
TRAPPC12-221ENST00000489032 PLCD3Q8N3E9 789 aa16.8■□□□□ 0.28
TRAPPC12-221ENST00000489032 PLEKHG5O94827 1062 aa16.77■□□□□ 0.28
TRAPPC12-221ENST00000489032 MIER1Q8N108 512 aa16.77■□□□□ 0.28
TRAPPC12-221ENST00000489032 SPDYE1Q8NFV5 336 aaPredicted RBP16.77■□□□□ 0.28
TRAPPC12-221ENST00000489032 KLHL34Q8N239 644 aa16.76■□□□□ 0.27
TRAPPC12-221ENST00000489032 IFNLR1Q8IU57 520 aaPredicted RBP16.75■□□□□ 0.27
TRAPPC12-221ENST00000489032 CLEC11AQ9Y240 323 aa16.71■□□□□ 0.27
TRAPPC12-221ENST00000489032 RB1CC1Q8TDY2 1594 aa16.71■□□□□ 0.27
TRAPPC12-221ENST00000489032 REM2Q8IYK8 340 aaPredicted RBP16.69■□□□□ 0.26
TRAPPC12-221ENST00000489032 ZBTB47Q9UFB7 747 aaPredicted RBP16.61■□□□□ 0.25
TRAPPC12-221ENST00000489032 PRR29P0C7W0 189 aa16.6■□□□□ 0.25
TRAPPC12-221ENST00000489032 SPOCK2Q92563 424 aa16.59■□□□□ 0.25
TRAPPC12-221ENST00000489032 PITPNM1O00562 1244 aa16.47■□□□□ 0.23
TRAPPC12-221ENST00000489032 NACADO15069 1562 aa16.43■□□□□ 0.22
TRAPPC12-221ENST00000489032 CREBZFQ9NS37 354 aa16.34■□□□□ 0.21
TRAPPC12-221ENST00000489032 DNAJC5Q9H3Z4 198 aa16.32■□□□□ 0.2
TRAPPC12-221ENST00000489032 CIZ1Q9ULV3 898 aaPredicted RBP16.32■□□□□ 0.2
TRAPPC12-221ENST00000489032 UNC13AQ9UPW8 1703 aa16.31■□□□□ 0.2
TRAPPC12-221ENST00000489032 DCAF8L2P0C7V8 631 aa16.3■□□□□ 0.2
TRAPPC12-221ENST00000489032 PKD2Q13563 968 aa16.3■□□□□ 0.2
TRAPPC12-221ENST00000489032 ECM2O94769 699 aaPredicted RBP16.28■□□□□ 0.2
TRAPPC12-221ENST00000489032 NPM1P06748 294 aaKnown RBP eCLIP16.24■□□□□ 0.19
TRAPPC12-221ENST00000489032 GSE1Q14687 1217 aa16.21■□□□□ 0.19
TRAPPC12-221ENST00000489032 BICRAQ9NZM4 1560 aa16.2■□□□□ 0.18
TRAPPC12-221ENST00000489032 DCAF8Q5TAQ9 597 aa16.18■□□□□ 0.18
TRAPPC12-221ENST00000489032 CHADLQ6NUI6 762 aa16.17■□□□□ 0.18
TRAPPC12-221ENST00000489032 NUBP1P53384 320 aa16.16■□□□□ 0.18
TRAPPC12-221ENST00000489032 MNX1P50219 401 aaPredicted RBP16.15■□□□□ 0.18
TRAPPC12-221ENST00000489032 CHRDL2Q6WN34 429 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms