RNA–Protein interactions for RNA: ENST00000487825.5

BRCA1-217, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-217ENST00000487825 AEBP2Q6ZN18 517 aaPredicted RBP27.06■■□□□ 1.92
BRCA1-217ENST00000487825 CHIC1Q5VXU3 224 aa26.09■■□□□ 1.77
BRCA1-217ENST00000487825 SENP3Q9H4L4 574 aaPredicted RBP22.97■■□□□ 1.27
BRCA1-217ENST00000487825 PHF23Q9BUL5 403 aaPredicted RBP22.94■■□□□ 1.26
BRCA1-217ENST00000487825 FOXD1Q16676 465 aa21.39■■□□□ 1.01
BRCA1-217ENST00000487825 PLPPR3Q6T4P5 718 aa21.05■□□□□ 0.96
BRCA1-217ENST00000487825 PPP6R1Q9UPN7 881 aa20.37■□□□□ 0.85
BRCA1-217ENST00000487825 ADRA2BP18089 450 aa20.34■□□□□ 0.85
BRCA1-217ENST00000487825 PIAS4Q8N2W9 510 aaPredicted RBP20.1■□□□□ 0.81
BRCA1-217ENST00000487825 MSH5O43196 834 aa19.81■□□□□ 0.76
BRCA1-217ENST00000487825 POTEDQ86YR6 584 aa19.1■□□□□ 0.65
BRCA1-217ENST00000487825 MAPK8IP2Q13387 824 aaPredicted RBP18.57■□□□□ 0.56
BRCA1-217ENST00000487825 SCAF1Q9H7N4 1312 aaKnown RBP18.55■□□□□ 0.56
BRCA1-217ENST00000487825 PPP4R3CPQ6ZMV5 832 aa18.53■□□□□ 0.56
BRCA1-217ENST00000487825 DMRT2Q9Y5R5 561 aa18.28■□□□□ 0.52
BRCA1-217ENST00000487825 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
BRCA1-217ENST00000487825 NCBP3Q53F19 620 aaKnown RBP17.93■□□□□ 0.46
BRCA1-217ENST00000487825 HOXD11P31277 338 aaPredicted RBP17.77■□□□□ 0.44
BRCA1-217ENST00000487825 KCNA4P22459 653 aa17.76■□□□□ 0.43
BRCA1-217ENST00000487825 RNF216Q9NWF9 866 aaPredicted RBP17.76■□□□□ 0.43
BRCA1-217ENST00000487825 NPM3O75607 178 aaKnown RBP17.68■□□□□ 0.42
BRCA1-217ENST00000487825 DCAF8L1A6NGE4 600 aa17.62■□□□□ 0.41
BRCA1-217ENST00000487825 DNAJC5BQ9UF47 199 aa17.1■□□□□ 0.33
BRCA1-217ENST00000487825 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.01■□□□□ 0.317e-7■■□□□ 12.5
BRCA1-217ENST00000487825 RNF39Q9H2S5 420 aa16.96■□□□□ 0.31
BRCA1-217ENST00000487825 SLC4A1APQ9BWU0 796 aaKnown RBP16.85■□□□□ 0.29
BRCA1-217ENST00000487825 CACNB1Q02641 598 aaPredicted RBP16.79■□□□□ 0.28
BRCA1-217ENST00000487825 SLC4A2P04920 1241 aa16.78■□□□□ 0.28
BRCA1-217ENST00000487825 C1QBPQ07021 282 aaKnown RBP16.72■□□□□ 0.27
BRCA1-217ENST00000487825 U3KPZ7 1027 aaPredicted RBP16.66■□□□□ 0.26
BRCA1-217ENST00000487825 FOXD4L1Q9NU39 408 aa16.41■□□□□ 0.22
BRCA1-217ENST00000487825 ZBTB22O15209 634 aa16.34■□□□□ 0.21
BRCA1-217ENST00000487825 SPINK5Q9NQ38 1064 aaPredicted RBP16.33■□□□□ 0.2
BRCA1-217ENST00000487825 MYCNP04198 464 aaPredicted RBP16.32■□□□□ 0.2
BRCA1-217ENST00000487825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-217ENST00000487825 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
BRCA1-217ENST00000487825 CAPN15O75808 1086 aa16.28■□□□□ 0.2
BRCA1-217ENST00000487825 SAMD1Q6SPF0 538 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-217ENST00000487825 APLP2Q06481 763 aa16.2■□□□□ 0.18
BRCA1-217ENST00000487825 TRHP20396 242 aaPredicted RBP16.14■□□□□ 0.17
BRCA1-217ENST00000487825 EHMT2Q96KQ7 1210 aa16.07■□□□□ 0.16
BRCA1-217ENST00000487825 ZNF219Q9P2Y4 722 aaPredicted RBP16.06■□□□□ 0.16
BRCA1-217ENST00000487825 DSG3P32926 999 aa16.04■□□□□ 0.16
BRCA1-217ENST00000487825 CSRNP3Q8WYN3 585 aa15.98■□□□□ 0.15
BRCA1-217ENST00000487825 ATF5Q9Y2D1 282 aaPredicted RBP15.97■□□□□ 0.15
BRCA1-217ENST00000487825 ABCB7O75027 752 aa15.96■□□□□ 0.15
BRCA1-217ENST00000487825 ATXN8OSP0DMR3 200 aa15.82■□□□□ 0.12
BRCA1-217ENST00000487825 POLA2Q14181 598 aa15.79■□□□□ 0.12
BRCA1-217ENST00000487825 ZBTB12Q9Y330 459 aaPredicted RBP15.44■□□□□ 0.06
BRCA1-217ENST00000487825 FBLN2P98095 1184 aa15.28■□□□□ 0.04
BRCA1-217ENST00000487825 OSCARQ8IYS5 282 aa15.27■□□□□ 0.04
BRCA1-217ENST00000487825 RBM42Q9BTD8 480 aaKnown RBP15.27■□□□□ 0.04
BRCA1-217ENST00000487825 MKRN4PQ13434 485 aaPredicted RBP15.23■□□□□ 0.03
BRCA1-217ENST00000487825 AKT1S1Q96B36 256 aa15.02■□□□□ -0
BRCA1-217ENST00000487825 SPDYE2BA6NHP3 402 aa15.01□□□□□ -0.01
BRCA1-217ENST00000487825 SPDYE6P0CI01 402 aa15.01□□□□□ -0.01
BRCA1-217ENST00000487825 SPDYE2Q495Y8 402 aa15.01□□□□□ -0.01
BRCA1-217ENST00000487825 ZNF692Q9BU19 519 aaPredicted RBP14.96□□□□□ -0.01
BRCA1-217ENST00000487825 POTEHQ6S545 545 aa14.94□□□□□ -0.02
BRCA1-217ENST00000487825 REM2Q8IYK8 340 aaPredicted RBP14.91□□□□□ -0.02
BRCA1-217ENST00000487825 SSUH2Q9Y2M2 353 aa14.86□□□□□ -0.03
BRCA1-217ENST00000487825 CHRDL2Q6WN34 429 aa14.79□□□□□ -0.04
BRCA1-217ENST00000487825 SPDYE4A6NLX3 237 aa14.75□□□□□ -0.05
BRCA1-217ENST00000487825 PABPN1Q86U42 306 aaKnown RBP eCLIP14.75□□□□□ -0.05
BRCA1-217ENST00000487825 PITPNM1O00562 1244 aa14.74□□□□□ -0.05
BRCA1-217ENST00000487825 CLEC11AQ9Y240 323 aa14.67□□□□□ -0.06
BRCA1-217ENST00000487825 SPDYE1Q8NFV5 336 aaPredicted RBP14.65□□□□□ -0.06
BRCA1-217ENST00000487825 PIP4P2Q8N4L2 257 aa14.54□□□□□ -0.08
BRCA1-217ENST00000487825 FXR2P51116 673 aaKnown RBP eCLIP14.5□□□□□ -0.09
BRCA1-217ENST00000487825 FKBP8Q14318 412 aa14.49□□□□□ -0.09
BRCA1-217ENST00000487825 PRR29P0C7W0 189 aa14.47□□□□□ -0.09
BRCA1-217ENST00000487825 PROM2Q8N271 834 aa14.39□□□□□ -0.11
BRCA1-217ENST00000487825 STAG3Q9UJ98 1225 aa14.39□□□□□ -0.11
BRCA1-217ENST00000487825 PRKAR2AP13861 404 aaKnown RBP14.38□□□□□ -0.11
BRCA1-217ENST00000487825 CHADLQ6NUI6 762 aa14.35□□□□□ -0.11
BRCA1-217ENST00000487825 HAX1O00165 279 aa14.2□□□□□ -0.14
BRCA1-217ENST00000487825 CREBZFQ9NS37 354 aa14.19□□□□□ -0.14
BRCA1-217ENST00000487825 FARP1Q9Y4F1 1045 aaPredicted RBP14.13□□□□□ -0.15
BRCA1-217ENST00000487825 EVX2Q03828 476 aa14.05□□□□□ -0.16
BRCA1-217ENST00000487825 MIER1Q8N108 512 aa14.04□□□□□ -0.16
BRCA1-217ENST00000487825 C19orf67A6NJJ6 358 aa14.02□□□□□ -0.17
BRCA1-217ENST00000487825 FBXO3Q9UK99 471 aa14□□□□□ -0.17
BRCA1-217ENST00000487825 PLCD3Q8N3E9 789 aa13.99□□□□□ -0.17
BRCA1-217ENST00000487825 MNX1P50219 401 aaPredicted RBP13.98□□□□□ -0.17
BRCA1-217ENST00000487825 SP7Q8TDD2 431 aaPredicted RBP13.97□□□□□ -0.17
BRCA1-217ENST00000487825 PLEKHG5O94827 1062 aa13.96□□□□□ -0.17
BRCA1-217ENST00000487825 CD44P16070 742 aaKnown RBP13.95□□□□□ -0.18
BRCA1-217ENST00000487825 NPM1P06748 294 aaKnown RBP eCLIP13.94□□□□□ -0.18
BRCA1-217ENST00000487825 VASPP50552 380 aaPredicted RBP13.84□□□□□ -0.19
BRCA1-217ENST00000487825 ZRANB1Q9UGI0 708 aa13.84□□□□□ -0.19
BRCA1-217ENST00000487825 PAK3O75914 559 aaPredicted RBP13.79□□□□□ -0.2
BRCA1-217ENST00000487825 ZBTB47Q9UFB7 747 aaPredicted RBP13.79□□□□□ -0.2
BRCA1-217ENST00000487825 TSPYL2Q9H2G4 693 aaPredicted RBP13.76□□□□□ -0.21
BRCA1-217ENST00000487825 GABBR2O75899 941 aa13.74□□□□□ -0.21
BRCA1-217ENST00000487825 KLHL34Q8N239 644 aa13.73□□□□□ -0.21
BRCA1-217ENST00000487825 RASEFQ8IZ41 740 aa13.72□□□□□ -0.21
BRCA1-217ENST00000487825 ZNF579Q8NAF0 562 aaKnown RBP13.71□□□□□ -0.21
BRCA1-217ENST00000487825 PHF12Q96QT6 1004 aa13.69□□□□□ -0.22
BRCA1-217ENST00000487825 NUBP1P53384 320 aa13.68□□□□□ -0.22
BRCA1-217ENST00000487825 IFNLR1Q8IU57 520 aaPredicted RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms