RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 DCAF8L2P0C7V8 631 aa28.05■■■□□ 2.08
COL7A1-210ENST00000487017 NISCHQ9Y2I1 1504 aa27.32■■□□□ 1.96
COL7A1-210ENST00000487017 SUPT5HO00267 1087 aaKnown RBP27.08■■□□□ 1.93
COL7A1-210ENST00000487017 SHROOM4Q9ULL8 1493 aa26.58■■□□□ 1.85
COL7A1-210ENST00000487017 EHMT2Q96KQ7 1210 aa26.06■■□□□ 1.76
COL7A1-210ENST00000487017 PELP1Q8IZL8 1130 aaKnown RBP25.88■■□□□ 1.73
COL7A1-210ENST00000487017 APLP2Q06481 763 aa25.63■■□□□ 1.69
COL7A1-210ENST00000487017 PCGF6Q9BYE7 350 aa25.61■■□□□ 1.69
COL7A1-210ENST00000487017 FAM9AQ8IZU1 332 aaPredicted RBP25.5■■□□□ 1.67
COL7A1-210ENST00000487017 ZEB1P37275 1124 aaPredicted RBP25.28■■□□□ 1.64
COL7A1-210ENST00000487017 TTBK1Q5TCY1 1321 aaPredicted RBP25.26■■□□□ 1.63
COL7A1-210ENST00000487017 CENPBP07199 599 aaPredicted RBP25.17■■□□□ 1.62
COL7A1-210ENST00000487017 TRIM41Q8WV44 630 aa25.11■■□□□ 1.61
COL7A1-210ENST00000487017 CCER1Q8TC90 406 aaPredicted RBP25.04■■□□□ 1.6
COL7A1-210ENST00000487017 ERICH6Q7L0X2 663 aa24.89■■□□□ 1.57
COL7A1-210ENST00000487017 RANGAP1P46060 587 aaPredicted RBP24.85■■□□□ 1.57
COL7A1-210ENST00000487017 UBTFP17480 764 aaKnown RBP24.72■■□□□ 1.55
COL7A1-210ENST00000487017 MYT1Q01538 1121 aa24.63■■□□□ 1.53
COL7A1-210ENST00000487017 TRIM26Q12899 539 aaPredicted RBP24.58■■□□□ 1.53
COL7A1-210ENST00000487017 ATP1B4Q9UN42 357 aaPredicted RBP24.58■■□□□ 1.52
COL7A1-210ENST00000487017 YTHDC1Q96MU7 727 aaKnown RBP24.55■■□□□ 1.52
COL7A1-210ENST00000487017 HRCP23327 699 aa24.52■■□□□ 1.51
COL7A1-210ENST00000487017 NEFLP07196 543 aa24.48■■□□□ 1.51
COL7A1-210ENST00000487017 PPARGC1BQ86YN6 1023 aaKnown RBP24.44■■□□□ 1.5
COL7A1-210ENST00000487017 CHIC1Q5VXU3 224 aa24.26■■□□□ 1.47
COL7A1-210ENST00000487017 LOC105371045A0A1W2PR82 267 aa24.2■■□□□ 1.46
COL7A1-210ENST00000487017 ITGAEP38570 1179 aa23.93■■□□□ 1.42
COL7A1-210ENST00000487017 HNRNPUL2Q1KMD3 747 aaKnown RBP23.91■■□□□ 1.42
COL7A1-210ENST00000487017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.76■■□□□ 1.39
COL7A1-210ENST00000487017 POLR3GLQ9BT43 218 aa23.76■■□□□ 1.39
COL7A1-210ENST00000487017 DIEXFQ68CQ4 756 aaKnown RBP23.74■■□□□ 1.39
COL7A1-210ENST00000487017 DAXXQ9UER7 740 aaPredicted RBP23.73■■□□□ 1.39
COL7A1-210ENST00000487017 MYT1LQ9UL68 1186 aa23.65■■□□□ 1.38
COL7A1-210ENST00000487017 CNGB1Q14028 1251 aaPredicted RBP23.65■■□□□ 1.38
COL7A1-210ENST00000487017 FAM50AQ14320 339 aaKnown RBP23.35■■□□□ 1.33
COL7A1-210ENST00000487017 GTF3C3Q9Y5Q9 886 aa23.34■■□□□ 1.33
COL7A1-210ENST00000487017 SLC4A1APQ9BWU0 796 aaKnown RBP23.32■■□□□ 1.32
COL7A1-210ENST00000487017 RTL5Q5HYW3 569 aaPredicted RBP23.27■■□□□ 1.32
COL7A1-210ENST00000487017 NEUROD1Q13562 356 aa23.23■■□□□ 1.31
COL7A1-210ENST00000487017 ZNF316A6NFI3 1004 aaPredicted RBP23.2■■□□□ 1.3
COL7A1-210ENST00000487017 TRIM52Q96A61 297 aa23.19■■□□□ 1.3
COL7A1-210ENST00000487017 CLSPNQ9HAW4 1339 aa23.19■■□□□ 1.3
COL7A1-210ENST00000487017 BCANQ96GW7 911 aa23.15■■□□□ 1.3
COL7A1-210ENST00000487017 ANP32CO43423 234 aa23.13■■□□□ 1.29
COL7A1-210ENST00000487017 ABCC9O60706 1549 aa23.12■■□□□ 1.29
COL7A1-210ENST00000487017 PABPN1Q86U42 306 aaKnown RBP eCLIP23.08■■□□□ 1.298e-7■■■■□ 25.2
COL7A1-210ENST00000487017 ACIN1Q9UKV3 1341 aaKnown RBP23.07■■□□□ 1.28
COL7A1-210ENST00000487017 CDK11AQ9UQ88 783 aaPredicted RBP23.01■■□□□ 1.27
COL7A1-210ENST00000487017 CSRNP3Q8WYN3 585 aa22.93■■□□□ 1.26
COL7A1-210ENST00000487017 ZNF326Q5BKZ1 582 aaKnown RBP22.89■■□□□ 1.26
COL7A1-210ENST00000487017 DCAF1Q9Y4B6 1507 aa22.89■■□□□ 1.25
COL7A1-210ENST00000487017 BCL11AQ9H165 835 aa22.75■■□□□ 1.23
COL7A1-210ENST00000487017 P3H3Q8IVL6 736 aa22.7■■□□□ 1.22
COL7A1-210ENST00000487017 ZCCHC6Q5VYS8 1495 aaKnown RBP22.68■■□□□ 1.22
COL7A1-210ENST00000487017 ZBTB47Q9UFB7 747 aaPredicted RBP22.63■■□□□ 1.21
COL7A1-210ENST00000487017 SLC24A1O60721 1099 aa22.62■■□□□ 1.21
COL7A1-210ENST00000487017 ANP32AP39687 249 aaKnown RBP22.62■■□□□ 1.21
COL7A1-210ENST00000487017 CANXP27824 592 aaKnown RBP22.6■■□□□ 1.21
COL7A1-210ENST00000487017 SCRIBQ14160 1630 aa22.58■■□□□ 1.21
COL7A1-210ENST00000487017 FKBP8Q14318 412 aa22.57■■□□□ 1.2
COL7A1-210ENST00000487017 FBLN2P98095 1184 aa22.56■■□□□ 1.2
COL7A1-210ENST00000487017 TONSLQ96HA7 1378 aa22.53■■□□□ 1.2
COL7A1-210ENST00000487017 ARID3CA6NKF2 412 aa22.52■■□□□ 1.2
COL7A1-210ENST00000487017 DDX10Q13206 875 aaKnown RBP22.45■■□□□ 1.18
COL7A1-210ENST00000487017 ZNF777Q9ULD5 760 aaPredicted RBP22.44■■□□□ 1.18
COL7A1-210ENST00000487017 HNRNPUQ00839 825 aaKnown RBP eCLIP22.44■■□□□ 1.18
COL7A1-210ENST00000487017 NPM2Q86SE8 214 aaKnown RBP22.43■■□□□ 1.18
COL7A1-210ENST00000487017 NEFMP07197 916 aa22.4■■□□□ 1.18
COL7A1-210ENST00000487017 SCAF1Q9H7N4 1312 aaKnown RBP22.36■■□□□ 1.17
COL7A1-210ENST00000487017 FAM9BQ8IZU0 186 aa22.33■■□□□ 1.17
COL7A1-210ENST00000487017 MYO15BQ96JP2 1530 aa22.3■■□□□ 1.16
COL7A1-210ENST00000487017 MIER1Q8N108 512 aa22.28■■□□□ 1.16
COL7A1-210ENST00000487017 CCDC180Q9P1Z9 1646 aa22.25■■□□□ 1.15
COL7A1-210ENST00000487017 CLIP1P30622 1438 aa22.2■■□□□ 1.14
COL7A1-210ENST00000487017 CCDC136Q96JN2 1154 aa22.18■■□□□ 1.14
COL7A1-210ENST00000487017 EIF5BO60841 1220 aaKnown RBP22.18■■□□□ 1.14
COL7A1-210ENST00000487017 CHIC2Q9UKJ5 165 aa22.17■■□□□ 1.14
COL7A1-210ENST00000487017 TMC1Q8TDI8 760 aa22.16■■□□□ 1.14
COL7A1-210ENST00000487017 UPF2Q9HAU5 1272 aaKnown RBP22.14■■□□□ 1.14
COL7A1-210ENST00000487017 MRS2Q9HD23 443 aa22.13■■□□□ 1.13
COL7A1-210ENST00000487017 SALL2Q9Y467 1007 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-210ENST00000487017 ANP32BQ92688 251 aaKnown RBP22.09■■□□□ 1.13
COL7A1-210ENST00000487017 CEP162Q5TB80 1403 aa22.09■■□□□ 1.13
COL7A1-210ENST00000487017 EEA1Q15075 1411 aa22.08■■□□□ 1.13
COL7A1-210ENST00000487017 HSP90AA1P07900 732 aaKnown RBP22.08■■□□□ 1.13
COL7A1-210ENST00000487017 MTUS2Q5JR59 1369 aa22.08■■□□□ 1.12
COL7A1-210ENST00000487017 GOLGA3Q08378 1498 aa22.07■■□□□ 1.12
COL7A1-210ENST00000487017 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.06■■□□□ 1.12
COL7A1-210ENST00000487017 NBR1Q14596 966 aa22.05■■□□□ 1.12
COL7A1-210ENST00000487017 CHGAP10645 457 aaKnown RBP22.04■■□□□ 1.12
COL7A1-210ENST00000487017 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
COL7A1-210ENST00000487017 HIRIP3Q9BW71 556 aaPredicted RBP22.03■■□□□ 1.12
COL7A1-210ENST00000487017 IRX6P78412 446 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-210ENST00000487017 WDR43Q15061 677 aaKnown RBP eCLIP22■■□□□ 1.11
COL7A1-210ENST00000487017 EIF4G2P78344 907 aaKnown RBP eCLIP22■■□□□ 1.11
COL7A1-210ENST00000487017 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.96■■□□□ 1.113e-6■■■□□ 16
COL7A1-210ENST00000487017 PLPPR3Q6T4P5 718 aa21.96■■□□□ 1.11
COL7A1-210ENST00000487017 KDM2AQ9Y2K7 1162 aa21.95■■□□□ 1.1
COL7A1-210ENST00000487017 TSPY4P0CV99 314 aa21.94■■□□□ 1.1
COL7A1-210ENST00000487017 TSPY10P0CW01 314 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms