RNA–Protein interactions for RNA: ENST00000486810.5

COPS3-209, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 3

Gene COPS3, Length 938 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-209ENST00000486810 AEBP2Q6ZN18 517 aaPredicted RBP25.71■■□□□ 1.71
COPS3-209ENST00000486810 CHIC1Q5VXU3 224 aa25■■□□□ 1.59
COPS3-209ENST00000486810 PHF23Q9BUL5 403 aaPredicted RBP22.06■■□□□ 1.12
COPS3-209ENST00000486810 SENP3Q9H4L4 574 aaPredicted RBP21.66■■□□□ 1.06
COPS3-209ENST00000486810 FOXD1Q16676 465 aa20.21■□□□□ 0.83
COPS3-209ENST00000486810 PLPPR3Q6T4P5 718 aa20.21■□□□□ 0.83
COPS3-209ENST00000486810 PPP6R1Q9UPN7 881 aa19.48■□□□□ 0.71
COPS3-209ENST00000486810 ADRA2BP18089 450 aa19.41■□□□□ 0.7
COPS3-209ENST00000486810 PIAS4Q8N2W9 510 aaPredicted RBP18.97■□□□□ 0.63
COPS3-209ENST00000486810 MSH5O43196 834 aa18.52■□□□□ 0.56
COPS3-209ENST00000486810 PPP4R3CPQ6ZMV5 832 aa17.86■□□□□ 0.45
COPS3-209ENST00000486810 MAPK8IP2Q13387 824 aaPredicted RBP17.65■□□□□ 0.42
COPS3-209ENST00000486810 SCAF1Q9H7N4 1312 aaKnown RBP17.59■□□□□ 0.41
COPS3-209ENST00000486810 KCNA4P22459 653 aa17.46■□□□□ 0.39
COPS3-209ENST00000486810 DMRT2Q9Y5R5 561 aa17.34■□□□□ 0.37
COPS3-209ENST00000486810 CNKSR2Q8WXI2 1034 aa17.33■□□□□ 0.36
COPS3-209ENST00000486810 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
COPS3-209ENST00000486810 NPM3O75607 178 aaKnown RBP17.15■□□□□ 0.34
COPS3-209ENST00000486810 POTEDQ86YR6 584 aa17.02■□□□□ 0.32
COPS3-209ENST00000486810 RNF216Q9NWF9 866 aaPredicted RBP17.01■□□□□ 0.31
COPS3-209ENST00000486810 HOXD11P31277 338 aaPredicted RBP16.99■□□□□ 0.31
COPS3-209ENST00000486810 DNAJC5BQ9UF47 199 aa16.65■□□□□ 0.26
COPS3-209ENST00000486810 SLC4A1APQ9BWU0 796 aaKnown RBP16.54■□□□□ 0.24
COPS3-209ENST00000486810 DCAF8L1A6NGE4 600 aa16.51■□□□□ 0.23
COPS3-209ENST00000486810 SLC4A2P04920 1241 aa16.25■□□□□ 0.19
COPS3-209ENST00000486810 ZBTB22O15209 634 aa16.13■□□□□ 0.17
COPS3-209ENST00000486810 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.1■□□□□ 0.17
COPS3-209ENST00000486810 EHMT2Q96KQ7 1210 aa16.06■□□□□ 0.16
COPS3-209ENST00000486810 FOXD4L1Q9NU39 408 aa16.01■□□□□ 0.15
COPS3-209ENST00000486810 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
COPS3-209ENST00000486810 RNF39Q9H2S5 420 aa15.95■□□□□ 0.14
COPS3-209ENST00000486810 U3KPZ7 1027 aaPredicted RBP15.94■□□□□ 0.14
COPS3-209ENST00000486810 MYCNP04198 464 aaPredicted RBP15.78■□□□□ 0.12
COPS3-209ENST00000486810 C1QBPQ07021 282 aaKnown RBP15.69■□□□□ 0.1
COPS3-209ENST00000486810 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.56■□□□□ 0.08
COPS3-209ENST00000486810 HNRNPUL2Q1KMD3 747 aaKnown RBP15.56■□□□□ 0.08
COPS3-209ENST00000486810 SAMD1Q6SPF0 538 aaPredicted RBP15.55■□□□□ 0.08
COPS3-209ENST00000486810 SPINK5Q9NQ38 1064 aaPredicted RBP15.51■□□□□ 0.07
COPS3-209ENST00000486810 ATF5Q9Y2D1 282 aaPredicted RBP15.5■□□□□ 0.07
COPS3-209ENST00000486810 CACNB1Q02641 598 aaPredicted RBP15.48■□□□□ 0.07
COPS3-209ENST00000486810 ATXN8OSP0DMR3 200 aa15.42■□□□□ 0.06
COPS3-209ENST00000486810 APLP2Q06481 763 aa15.37■□□□□ 0.05
COPS3-209ENST00000486810 CAPN15O75808 1086 aa15.35■□□□□ 0.05
COPS3-209ENST00000486810 TRHP20396 242 aaPredicted RBP15.29■□□□□ 0.04
COPS3-209ENST00000486810 ZNF219Q9P2Y4 722 aaPredicted RBP15.24■□□□□ 0.03
COPS3-209ENST00000486810 DSG3P32926 999 aa15.18■□□□□ 0.02
COPS3-209ENST00000486810 ABCB7O75027 752 aa15.12■□□□□ 0.01
COPS3-209ENST00000486810 POLA2Q14181 598 aa15.06■□□□□ 0
COPS3-209ENST00000486810 MKRN4PQ13434 485 aaPredicted RBP14.81□□□□□ -0.04
COPS3-209ENST00000486810 ZBTB12Q9Y330 459 aaPredicted RBP14.7□□□□□ -0.06
COPS3-209ENST00000486810 FBLN2P98095 1184 aa14.65□□□□□ -0.06
COPS3-209ENST00000486810 OSCARQ8IYS5 282 aa14.57□□□□□ -0.08
COPS3-209ENST00000486810 SPDYE2BA6NHP3 402 aa14.37□□□□□ -0.11
COPS3-209ENST00000486810 SPDYE6P0CI01 402 aa14.37□□□□□ -0.11
COPS3-209ENST00000486810 SPDYE2Q495Y8 402 aa14.37□□□□□ -0.11
COPS3-209ENST00000486810 SPDYE4A6NLX3 237 aa14.36□□□□□ -0.11
COPS3-209ENST00000486810 FKBP8Q14318 412 aa14.36□□□□□ -0.11
COPS3-209ENST00000486810 RBM42Q9BTD8 480 aaKnown RBP14.33□□□□□ -0.12
COPS3-209ENST00000486810 SSUH2Q9Y2M2 353 aa14.32□□□□□ -0.12
COPS3-209ENST00000486810 ZNF692Q9BU19 519 aaPredicted RBP14.31□□□□□ -0.12
COPS3-209ENST00000486810 AKT1S1Q96B36 256 aa14.21□□□□□ -0.13
COPS3-209ENST00000486810 PROM2Q8N271 834 aa14.2□□□□□ -0.14
COPS3-209ENST00000486810 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
COPS3-209ENST00000486810 REM2Q8IYK8 340 aaPredicted RBP14.11□□□□□ -0.15
COPS3-209ENST00000486810 PITPNM1O00562 1244 aa13.97□□□□□ -0.17
COPS3-209ENST00000486810 SPDYE1Q8NFV5 336 aaPredicted RBP13.93□□□□□ -0.18
COPS3-209ENST00000486810 CLEC11AQ9Y240 323 aa13.88□□□□□ -0.19
COPS3-209ENST00000486810 CHRDL2Q6WN34 429 aa13.82□□□□□ -0.2
COPS3-209ENST00000486810 STAG3Q9UJ98 1225 aa13.82□□□□□ -0.2
COPS3-209ENST00000486810 FBXO3Q9UK99 471 aa13.76□□□□□ -0.21
COPS3-209ENST00000486810 PRR29P0C7W0 189 aa13.75□□□□□ -0.21
COPS3-209ENST00000486810 FXR2P51116 673 aaKnown RBP eCLIP13.72□□□□□ -0.21
COPS3-209ENST00000486810 PIP4P2Q8N4L2 257 aa13.69□□□□□ -0.22
COPS3-209ENST00000486810 VASPP50552 380 aaPredicted RBP13.67□□□□□ -0.22
COPS3-209ENST00000486810 CREBZFQ9NS37 354 aa13.66□□□□□ -0.22
COPS3-209ENST00000486810 CHADLQ6NUI6 762 aa13.63□□□□□ -0.23
COPS3-209ENST00000486810 PRKAR2AP13861 404 aaKnown RBP13.58□□□□□ -0.24
COPS3-209ENST00000486810 MIER1Q8N108 512 aa13.58□□□□□ -0.24
COPS3-209ENST00000486810 MNX1P50219 401 aaPredicted RBP13.55□□□□□ -0.24
COPS3-209ENST00000486810 IFNLR1Q8IU57 520 aaPredicted RBP13.54□□□□□ -0.24
COPS3-209ENST00000486810 PLCD3Q8N3E9 789 aa13.54□□□□□ -0.24
COPS3-209ENST00000486810 FARP1Q9Y4F1 1045 aaPredicted RBP13.46□□□□□ -0.25
COPS3-209ENST00000486810 POTEHQ6S545 545 aa13.43□□□□□ -0.26
COPS3-209ENST00000486810 PLEKHG5O94827 1062 aa13.4□□□□□ -0.26
COPS3-209ENST00000486810 KLHL34Q8N239 644 aa13.37□□□□□ -0.27
COPS3-209ENST00000486810 ZBTB47Q9UFB7 747 aaPredicted RBP13.34□□□□□ -0.27
COPS3-209ENST00000486810 NUBP1P53384 320 aa13.33□□□□□ -0.28
COPS3-209ENST00000486810 NPM1P06748 294 aaKnown RBP eCLIP13.3□□□□□ -0.28
COPS3-209ENST00000486810 SPOCK2Q92563 424 aa13.29□□□□□ -0.28
COPS3-209ENST00000486810 RASEFQ8IZ41 740 aa13.27□□□□□ -0.29
COPS3-209ENST00000486810 C19orf67A6NJJ6 358 aa13.25□□□□□ -0.29
COPS3-209ENST00000486810 EVX2Q03828 476 aa13.22□□□□□ -0.29
COPS3-209ENST00000486810 CD44P16070 742 aaKnown RBP13.19□□□□□ -0.3
COPS3-209ENST00000486810 HAX1O00165 279 aa13.18□□□□□ -0.3
COPS3-209ENST00000486810 TSPYL2Q9H2G4 693 aaPredicted RBP13.15□□□□□ -0.3
COPS3-209ENST00000486810 DCAF8Q5TAQ9 597 aa13.11□□□□□ -0.31
COPS3-209ENST00000486810 FAM212AQ96EL1 285 aa13.11□□□□□ -0.31
COPS3-209ENST00000486810 ZRANB1Q9UGI0 708 aa13.11□□□□□ -0.31
COPS3-209ENST00000486810 CCDC61Q9Y6R9 512 aa13.11□□□□□ -0.31
COPS3-209ENST00000486810 PKD2Q13563 968 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms