RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 NISCHQ9Y2I1 1504 aa25.24■■□□□ 1.63
HMGN1-216ENST00000486741 DCAF8L2P0C7V8 631 aa23.87■■□□□ 1.41
HMGN1-216ENST00000486741 SHROOM4Q9ULL8 1493 aa23.21■■□□□ 1.31
HMGN1-216ENST00000486741 SUPT5HO00267 1087 aaKnown RBP23.06■■□□□ 1.28
HMGN1-216ENST00000486741 EHMT2Q96KQ7 1210 aa21.93■■□□□ 1.1
HMGN1-216ENST00000486741 FAM9AQ8IZU1 332 aaPredicted RBP21.6■■□□□ 1.05
HMGN1-216ENST00000486741 PCGF6Q9BYE7 350 aa21.31■■□□□ 1
HMGN1-216ENST00000486741 TRIM41Q8WV44 630 aa21.26■□□□□ 0.99
HMGN1-216ENST00000486741 CHIC1Q5VXU3 224 aa21.25■□□□□ 0.99
HMGN1-216ENST00000486741 ABCC9O60706 1549 aa21.2■□□□□ 0.98
HMGN1-216ENST00000486741 LOC105371045A0A1W2PR82 267 aa21.11■□□□□ 0.97
HMGN1-216ENST00000486741 TTBK1Q5TCY1 1321 aaPredicted RBP21.09■□□□□ 0.97
HMGN1-216ENST00000486741 ZCCHC6Q5VYS8 1495 aaKnown RBP21.05■□□□□ 0.96
HMGN1-216ENST00000486741 RANGAP1P46060 587 aaPredicted RBP20.88■□□□□ 0.93
HMGN1-216ENST00000486741 PPARGC1BQ86YN6 1023 aaKnown RBP20.87■□□□□ 0.93
HMGN1-216ENST00000486741 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
HMGN1-216ENST00000486741 PABPN1Q86U42 306 aaKnown RBP eCLIP20.82■□□□□ 0.92
HMGN1-216ENST00000486741 UBTFP17480 764 aaKnown RBP20.68■□□□□ 0.9
HMGN1-216ENST00000486741 SCRIBQ14160 1630 aa20.61■□□□□ 0.89
HMGN1-216ENST00000486741 APLP2Q06481 763 aa20.6■□□□□ 0.89
HMGN1-216ENST00000486741 TRIM26Q12899 539 aaPredicted RBP20.46■□□□□ 0.87
HMGN1-216ENST00000486741 HRCP23327 699 aa20.42■□□□□ 0.86
HMGN1-216ENST00000486741 CCER1Q8TC90 406 aaPredicted RBP20.4■□□□□ 0.86
HMGN1-216ENST00000486741 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
HMGN1-216ENST00000486741 ATP1B4Q9UN42 357 aaPredicted RBP20.28■□□□□ 0.84
HMGN1-216ENST00000486741 RSF1Q96T23 1441 aaPredicted RBP20.18■□□□□ 0.82
HMGN1-216ENST00000486741 ZEB1P37275 1124 aaPredicted RBP20.17■□□□□ 0.82
HMGN1-216ENST00000486741 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.06■□□□□ 0.8
HMGN1-216ENST00000486741 DCAF1Q9Y4B6 1507 aa20.05■□□□□ 0.8
HMGN1-216ENST00000486741 HNRNPUL2Q1KMD3 747 aaKnown RBP20.05■□□□□ 0.8
HMGN1-216ENST00000486741 CECR2Q9BXF3 1484 aa20.01■□□□□ 0.79
HMGN1-216ENST00000486741 ITGAEP38570 1179 aa19.97■□□□□ 0.79
HMGN1-216ENST00000486741 NACADO15069 1562 aa19.91■□□□□ 0.78
HMGN1-216ENST00000486741 CSRNP3Q8WYN3 585 aa19.9■□□□□ 0.78
HMGN1-216ENST00000486741 RB1CC1Q8TDY2 1594 aa19.89■□□□□ 0.77
HMGN1-216ENST00000486741 YTHDC1Q96MU7 727 aaKnown RBP19.75■□□□□ 0.75
HMGN1-216ENST00000486741 PELP1Q8IZL8 1130 aaKnown RBP19.73■□□□□ 0.75
HMGN1-216ENST00000486741 MROH2BQ7Z745 1585 aa19.73■□□□□ 0.75
HMGN1-216ENST00000486741 P3H3Q8IVL6 736 aa19.6■□□□□ 0.73
HMGN1-216ENST00000486741 CENPBP07199 599 aaPredicted RBP19.57■□□□□ 0.72
HMGN1-216ENST00000486741 BAZ1AQ9NRL2 1556 aaPredicted RBP19.55■□□□□ 0.72
HMGN1-216ENST00000486741 FAM50AQ14320 339 aaKnown RBP19.5■□□□□ 0.71
HMGN1-216ENST00000486741 WIZO95785 1651 aa19.48■□□□□ 0.71
HMGN1-216ENST00000486741 DIEXFQ68CQ4 756 aaKnown RBP19.46■□□□□ 0.71
HMGN1-216ENST00000486741 CCDC88BA6NC98 1476 aa19.41■□□□□ 0.7
HMGN1-216ENST00000486741 WRNQ14191 1432 aaPredicted RBP eCLIP19.41■□□□□ 0.7
HMGN1-216ENST00000486741 BAZ1BQ9UIG0 1483 aaKnown RBP19.41■□□□□ 0.7
HMGN1-216ENST00000486741 SOGA1O94964 1423 aa19.4■□□□□ 0.7
HMGN1-216ENST00000486741 ABCC8Q09428 1581 aa19.39■□□□□ 0.69
HMGN1-216ENST00000486741 ARID3CA6NKF2 412 aa19.38■□□□□ 0.69
HMGN1-216ENST00000486741 CEP162Q5TB80 1403 aa19.34■□□□□ 0.69
HMGN1-216ENST00000486741 NEUROD1Q13562 356 aa19.31■□□□□ 0.68
HMGN1-216ENST00000486741 FBLN2P98095 1184 aa19.29■□□□□ 0.68
HMGN1-216ENST00000486741 MYT1Q01538 1121 aa19.29■□□□□ 0.68
HMGN1-216ENST00000486741 CLIP1P30622 1438 aa19.27■□□□□ 0.67
HMGN1-216ENST00000486741 GOLGA3Q08378 1498 aa19.19■□□□□ 0.66
HMGN1-216ENST00000486741 CNGB1Q14028 1251 aaPredicted RBP19.18■□□□□ 0.66
HMGN1-216ENST00000486741 TNIKQ9UKE5 1360 aa19.18■□□□□ 0.66
HMGN1-216ENST00000486741 ZNF316A6NFI3 1004 aaPredicted RBP19.16■□□□□ 0.66
HMGN1-216ENST00000486741 EEA1Q15075 1411 aa19.16■□□□□ 0.66
HMGN1-216ENST00000486741 TOP2AP11388 1531 aaKnown RBP19.14■□□□□ 0.65
HMGN1-216ENST00000486741 TRIM52Q96A61 297 aa19.13■□□□□ 0.65
HMGN1-216ENST00000486741 POLR3GLQ9BT43 218 aa19.13■□□□□ 0.65
HMGN1-216ENST00000486741 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
HMGN1-216ENST00000486741 RUSC2Q8N2Y8 1516 aa19.1■□□□□ 0.65
HMGN1-216ENST00000486741 CEP164Q9UPV0 1460 aa19.05■□□□□ 0.64
HMGN1-216ENST00000486741 ATAD2BQ9ULI0 1458 aa19.03■□□□□ 0.64
HMGN1-216ENST00000486741 KIF27Q86VH2 1401 aa19■□□□□ 0.63
HMGN1-216ENST00000486741 MYT1LQ9UL68 1186 aa19■□□□□ 0.63
HMGN1-216ENST00000486741 GTF3C3Q9Y5Q9 886 aa18.97■□□□□ 0.63
HMGN1-216ENST00000486741 SMARCA2P51531 1590 aa18.95■□□□□ 0.62
HMGN1-216ENST00000486741 CHIC2Q9UKJ5 165 aa18.93■□□□□ 0.62
HMGN1-216ENST00000486741 ZNF777Q9ULD5 760 aaPredicted RBP18.92■□□□□ 0.62
HMGN1-216ENST00000486741 CUX2O14529 1486 aa18.89■□□□□ 0.61
HMGN1-216ENST00000486741 ZNF326Q5BKZ1 582 aaKnown RBP18.88■□□□□ 0.61
HMGN1-216ENST00000486741 KANK4Q5T7N3 995 aaPredicted RBP18.88■□□□□ 0.61
HMGN1-216ENST00000486741 NEFLP07196 543 aa18.88■□□□□ 0.61
HMGN1-216ENST00000486741 ACIN1Q9UKV3 1341 aaKnown RBP18.84■□□□□ 0.61
HMGN1-216ENST00000486741 HIRIP3Q9BW71 556 aaPredicted RBP18.83■□□□□ 0.61
HMGN1-216ENST00000486741 RAPGEF2Q9Y4G8 1499 aa18.83■□□□□ 0.6
HMGN1-216ENST00000486741 CARMIL1Q5VZK9 1371 aa18.82■□□□□ 0.6
HMGN1-216ENST00000486741 MTUS2Q5JR59 1369 aa18.81■□□□□ 0.6
HMGN1-216ENST00000486741 MIER1Q8N108 512 aa18.8■□□□□ 0.6
HMGN1-216ENST00000486741 VPS8Q8N3P4 1428 aa18.77■□□□□ 0.6
HMGN1-216ENST00000486741 DDX10Q13206 875 aaKnown RBP18.75■□□□□ 0.59
HMGN1-216ENST00000486741 CHMP7Q8WUX9 453 aaPredicted RBP18.74■□□□□ 0.59
HMGN1-216ENST00000486741 RRP7BPQ9NSQ0 103 aa18.73■□□□□ 0.59
HMGN1-216ENST00000486741 TDRD9Q8NDG6 1382 aaKnown RBP18.72■□□□□ 0.59
HMGN1-216ENST00000486741 CADPSQ9ULU8 1353 aa18.72■□□□□ 0.59
HMGN1-216ENST00000486741 BCANQ96GW7 911 aa18.7■□□□□ 0.58
HMGN1-216ENST00000486741 CDK11AQ9UQ88 783 aaPredicted RBP18.7■□□□□ 0.58
HMGN1-216ENST00000486741 ANP32CO43423 234 aa18.68■□□□□ 0.58
HMGN1-216ENST00000486741 SIN3AQ96ST3 1273 aa18.67■□□□□ 0.58
HMGN1-216ENST00000486741 SCAF1Q9H7N4 1312 aaKnown RBP18.67■□□□□ 0.58
HMGN1-216ENST00000486741 TONSLQ96HA7 1378 aa18.66■□□□□ 0.58
HMGN1-216ENST00000486741 CCNB3Q8WWL7 1395 aa18.62■□□□□ 0.57
HMGN1-216ENST00000486741 BICRAQ9NZM4 1560 aa18.61■□□□□ 0.57
HMGN1-216ENST00000486741 EIF4G1Q04637 1599 aaKnown RBP18.57■□□□□ 0.56
HMGN1-216ENST00000486741 SYNJ1O43426 1573 aa18.56■□□□□ 0.56
HMGN1-216ENST00000486741 NCAPD3P42695 1498 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms