RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 AEBP2Q6ZN18 517 aaPredicted RBP23.97■■□□□ 1.43
VPS50-216ENST00000484954 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
VPS50-216ENST00000484954 SENP3Q9H4L4 574 aaPredicted RBP20.48■□□□□ 0.87
VPS50-216ENST00000484954 PHF23Q9BUL5 403 aaPredicted RBP20.14■□□□□ 0.81
VPS50-216ENST00000484954 POTEDQ86YR6 584 aa19.86■□□□□ 0.77
VPS50-216ENST00000484954 FOXD1Q16676 465 aa19.31■□□□□ 0.68
VPS50-216ENST00000484954 MSH5O43196 834 aa18.38■□□□□ 0.53
VPS50-216ENST00000484954 PIAS4Q8N2W9 510 aaPredicted RBP17.75■□□□□ 0.43
VPS50-216ENST00000484954 PLPPR3Q6T4P5 718 aa17.61■□□□□ 0.41
VPS50-216ENST00000484954 PPP6R1Q9UPN7 881 aa17.58■□□□□ 0.4
VPS50-216ENST00000484954 ADRA2BP18089 450 aa17.52■□□□□ 0.4
VPS50-216ENST00000484954 CACNB1Q02641 598 aaPredicted RBP16.4■□□□□ 0.22
VPS50-216ENST00000484954 MAPK8IP2Q13387 824 aaPredicted RBP16.23■□□□□ 0.19
VPS50-216ENST00000484954 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
VPS50-216ENST00000484954 SCAF1Q9H7N4 1312 aaKnown RBP15.94■□□□□ 0.14
VPS50-216ENST00000484954 RNF39Q9H2S5 420 aa15.66■□□□□ 0.1
VPS50-216ENST00000484954 DCAF8L1A6NGE4 600 aa15.59■□□□□ 0.09
VPS50-216ENST00000484954 PPP4R3CPQ6ZMV5 832 aa15.43■□□□□ 0.06
VPS50-216ENST00000484954 C1QBPQ07021 282 aaKnown RBP15.34■□□□□ 0.05
VPS50-216ENST00000484954 HOXD11P31277 338 aaPredicted RBP15.33■□□□□ 0.04
VPS50-216ENST00000484954 POTEHQ6S545 545 aa15.3■□□□□ 0.04
VPS50-216ENST00000484954 CNKSR2Q8WXI2 1034 aa15.19■□□□□ 0.02
VPS50-216ENST00000484954 RNF216Q9NWF9 866 aaPredicted RBP15.12■□□□□ 0.01
VPS50-216ENST00000484954 DNAJC5BQ9UF47 199 aa14.88□□□□□ -0.03
VPS50-216ENST00000484954 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.06
VPS50-216ENST00000484954 NCBP3Q53F19 620 aaKnown RBP14.68□□□□□ -0.06
VPS50-216ENST00000484954 NPM3O75607 178 aaKnown RBP14.51□□□□□ -0.09
VPS50-216ENST00000484954 U3KPZ7 1027 aaPredicted RBP14.32□□□□□ -0.12
VPS50-216ENST00000484954 DSG3P32926 999 aa14.31□□□□□ -0.12
VPS50-216ENST00000484954 SPINK5Q9NQ38 1064 aaPredicted RBP14.27□□□□□ -0.13
VPS50-216ENST00000484954 CAPN15O75808 1086 aa14.26□□□□□ -0.13
VPS50-216ENST00000484954 TRHP20396 242 aaPredicted RBP13.98□□□□□ -0.17
VPS50-216ENST00000484954 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
VPS50-216ENST00000484954 ABCB7O75027 752 aa13.94□□□□□ -0.18
VPS50-216ENST00000484954 KCNA4P22459 653 aa13.94□□□□□ -0.18
VPS50-216ENST00000484954 SP7Q8TDD2 431 aaPredicted RBP13.83□□□□□ -0.2
VPS50-216ENST00000484954 ZNF219Q9P2Y4 722 aaPredicted RBP13.82□□□□□ -0.2
VPS50-216ENST00000484954 APLP2Q06481 763 aa13.8□□□□□ -0.2
VPS50-216ENST00000484954 CHRDL2Q6WN34 429 aa13.74□□□□□ -0.21
VPS50-216ENST00000484954 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
VPS50-216ENST00000484954 HNRNPUL2Q1KMD3 747 aaKnown RBP13.7□□□□□ -0.22
VPS50-216ENST00000484954 SAMD1Q6SPF0 538 aaPredicted RBP13.63□□□□□ -0.23
VPS50-216ENST00000484954 RBM42Q9BTD8 480 aaKnown RBP13.55□□□□□ -0.24
VPS50-216ENST00000484954 POLA2Q14181 598 aa13.46□□□□□ -0.25
VPS50-216ENST00000484954 MYCNP04198 464 aaPredicted RBP13.4□□□□□ -0.26
VPS50-216ENST00000484954 PIP4P2Q8N4L2 257 aa13.21□□□□□ -0.29
VPS50-216ENST00000484954 ATF5Q9Y2D1 282 aaPredicted RBP13.2□□□□□ -0.3
VPS50-216ENST00000484954 HAX1O00165 279 aa13.19□□□□□ -0.3
VPS50-216ENST00000484954 AKT1S1Q96B36 256 aa13.15□□□□□ -0.3
VPS50-216ENST00000484954 EVX2Q03828 476 aa13.12□□□□□ -0.31
VPS50-216ENST00000484954 REM2Q8IYK8 340 aaPredicted RBP13.07□□□□□ -0.32
VPS50-216ENST00000484954 SLC4A1APQ9BWU0 796 aaKnown RBP13.07□□□□□ -0.32
VPS50-216ENST00000484954 FOXD4L1Q9NU39 408 aa13.07□□□□□ -0.32
VPS50-216ENST00000484954 OSCARQ8IYS5 282 aa13.06□□□□□ -0.32
VPS50-216ENST00000484954 ZBTB12Q9Y330 459 aaPredicted RBP13.06□□□□□ -0.32
VPS50-216ENST00000484954 FXR2P51116 673 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS50-216ENST00000484954 LHX8Q68G74 356 aa12.97□□□□□ -0.33
VPS50-216ENST00000484954 PITPNM1O00562 1244 aa12.94□□□□□ -0.34
VPS50-216ENST00000484954 PLSCR2Q9NRY7 297 aa12.92□□□□□ -0.34
VPS50-216ENST00000484954 ZBTB22O15209 634 aa12.8□□□□□ -0.36
VPS50-216ENST00000484954 GABBR2O75899 941 aa12.69□□□□□ -0.38
VPS50-216ENST00000484954 SPDYE2BA6NHP3 402 aa12.66□□□□□ -0.38
VPS50-216ENST00000484954 SPDYE6P0CI01 402 aa12.66□□□□□ -0.38
VPS50-216ENST00000484954 SPDYE2Q495Y8 402 aa12.66□□□□□ -0.38
VPS50-216ENST00000484954 FBLN2P98095 1184 aa12.65□□□□□ -0.38
VPS50-216ENST00000484954 CLEC11AQ9Y240 323 aa12.65□□□□□ -0.38
VPS50-216ENST00000484954 C19orf67A6NJJ6 358 aa12.63□□□□□ -0.39
VPS50-216ENST00000484954 ATXN8OSP0DMR3 200 aa12.63□□□□□ -0.39
VPS50-216ENST00000484954 PRKAR2AP13861 404 aaKnown RBP12.62□□□□□ -0.39
VPS50-216ENST00000484954 SPDYE1Q8NFV5 336 aaPredicted RBP12.55□□□□□ -0.4
VPS50-216ENST00000484954 MKRN4PQ13434 485 aaPredicted RBP12.53□□□□□ -0.4
VPS50-216ENST00000484954 ZNF692Q9BU19 519 aaPredicted RBP12.51□□□□□ -0.41
VPS50-216ENST00000484954 POTEIP0CG38 1075 aa12.49□□□□□ -0.41
VPS50-216ENST00000484954 EHMT2Q96KQ7 1210 aa12.47□□□□□ -0.41
VPS50-216ENST00000484954 CHADLQ6NUI6 762 aa12.45□□□□□ -0.42
VPS50-216ENST00000484954 SSUH2Q9Y2M2 353 aa12.45□□□□□ -0.42
VPS50-216ENST00000484954 CSRNP3Q8WYN3 585 aa12.43□□□□□ -0.42
VPS50-216ENST00000484954 PRR29P0C7W0 189 aa12.33□□□□□ -0.44
VPS50-216ENST00000484954 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS50-216ENST00000484954 POTEMA6NI47 508 aa12.23□□□□□ -0.45
VPS50-216ENST00000484954 CD44P16070 742 aaKnown RBP12.2□□□□□ -0.46
VPS50-216ENST00000484954 OTUD5Q96G74 571 aa12.18□□□□□ -0.46
VPS50-216ENST00000484954 POTEGQ6S5H5 508 aa12.16□□□□□ -0.46
VPS50-216ENST00000484954 FARP1Q9Y4F1 1045 aaPredicted RBP12.15□□□□□ -0.46
VPS50-216ENST00000484954 PCDH10Q9P2E7 1040 aa12.13□□□□□ -0.47
VPS50-216ENST00000484954 CLCN6P51797 869 aa12.09□□□□□ -0.47
VPS50-216ENST00000484954 POTEB2H3BUK9 544 aa12.05□□□□□ -0.48
VPS50-216ENST00000484954 DCBLD2Q96PD2 775 aa12.01□□□□□ -0.49
VPS50-216ENST00000484954 ZRANB1Q9UGI0 708 aa11.98□□□□□ -0.49
VPS50-216ENST00000484954 ZNF579Q8NAF0 562 aaKnown RBP11.93□□□□□ -0.5
VPS50-216ENST00000484954 CREBZFQ9NS37 354 aa11.92□□□□□ -0.5
VPS50-216ENST00000484954 GALR2O43603 387 aaPredicted RBP11.89□□□□□ -0.51
VPS50-216ENST00000484954 LCE2DQ5TA82 110 aaPredicted RBP11.85□□□□□ -0.51
VPS50-216ENST00000484954 STAG3Q9UJ98 1225 aa11.82□□□□□ -0.52
VPS50-216ENST00000484954 PHF12Q96QT6 1004 aa11.81□□□□□ -0.52
VPS50-216ENST00000484954 PAK3O75914 559 aaPredicted RBP11.77□□□□□ -0.53
VPS50-216ENST00000484954 SPDYE4A6NLX3 237 aa11.75□□□□□ -0.53
VPS50-216ENST00000484954 POTEJP0CG39 1038 aa11.72□□□□□ -0.53
VPS50-216ENST00000484954 PELP1Q8IZL8 1130 aaKnown RBP11.69□□□□□ -0.54
VPS50-216ENST00000484954 NPM1P06748 294 aaKnown RBP eCLIP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms