RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 NISCHQ9Y2I1 1504 aa31.68■■■□□ 2.66
CHD3-211ENST00000481999 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
CHD3-211ENST00000481999 ZCCHC6Q5VYS8 1495 aaKnown RBP26.66■■□□□ 1.86
CHD3-211ENST00000481999 SHROOM4Q9ULL8 1493 aa26.64■■□□□ 1.85
CHD3-211ENST00000481999 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
CHD3-211ENST00000481999 ABCC9O60706 1549 aa26.36■■□□□ 1.81
CHD3-211ENST00000481999 DCAF1Q9Y4B6 1507 aa25.92■■□□□ 1.74
CHD3-211ENST00000481999 SUPT5HO00267 1087 aaKnown RBP25.75■■□□□ 1.71
CHD3-211ENST00000481999 SCRIBQ14160 1630 aa25.51■■□□□ 1.67
CHD3-211ENST00000481999 NACADO15069 1562 aa25.46■■□□□ 1.67
CHD3-211ENST00000481999 RB1CC1Q8TDY2 1594 aa25.42■■□□□ 1.66
CHD3-211ENST00000481999 MYO15BQ96JP2 1530 aa25.41■■□□□ 1.66
CHD3-211ENST00000481999 UNC13AQ9UPW8 1703 aa24.88■■□□□ 1.57
CHD3-211ENST00000481999 CECR2Q9BXF3 1484 aa24.84■■□□□ 1.57
CHD3-211ENST00000481999 RSF1Q96T23 1441 aaPredicted RBP24.83■■□□□ 1.56
CHD3-211ENST00000481999 PABPN1Q86U42 306 aaKnown RBP eCLIP24.72■■□□□ 1.55
CHD3-211ENST00000481999 BICRAQ9NZM4 1560 aa24.68■■□□□ 1.54
CHD3-211ENST00000481999 MROH2BQ7Z745 1585 aa24.65■■□□□ 1.54
CHD3-211ENST00000481999 CHIC1Q5VXU3 224 aa24.64■■□□□ 1.53
CHD3-211ENST00000481999 WIZO95785 1651 aa24.5■■□□□ 1.51
CHD3-211ENST00000481999 BAZ1AQ9NRL2 1556 aaPredicted RBP24.36■■□□□ 1.49
CHD3-211ENST00000481999 SMARCA4P51532 1647 aa24.29■■□□□ 1.48
CHD3-211ENST00000481999 TOP2AP11388 1531 aaKnown RBP24.02■■□□□ 1.44
CHD3-211ENST00000481999 EIF4G1Q04637 1599 aaKnown RBP23.99■■□□□ 1.43
CHD3-211ENST00000481999 TRIM41Q8WV44 630 aa23.97■■□□□ 1.43
CHD3-211ENST00000481999 LOC105371045A0A1W2PR82 267 aa23.96■■□□□ 1.43
CHD3-211ENST00000481999 CCDC88BA6NC98 1476 aa23.95■■□□□ 1.42
CHD3-211ENST00000481999 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
CHD3-211ENST00000481999 SMARCA2P51531 1590 aa23.9■■□□□ 1.42
CHD3-211ENST00000481999 FAM9AQ8IZU1 332 aaPredicted RBP23.85■■□□□ 1.41
CHD3-211ENST00000481999 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
CHD3-211ENST00000481999 CC2D2AQ9P2K1 1620 aa23.82■■□□□ 1.4
CHD3-211ENST00000481999 PEG3Q9GZU2 1588 aa23.81■■□□□ 1.4
CHD3-211ENST00000481999 EHMT2Q96KQ7 1210 aa23.74■■□□□ 1.39
CHD3-211ENST00000481999 BAZ1BQ9UIG0 1483 aaKnown RBP23.73■■□□□ 1.39
CHD3-211ENST00000481999 ABCC8Q09428 1581 aa23.72■■□□□ 1.39
CHD3-211ENST00000481999 NCAPD3P42695 1498 aa23.51■■□□□ 1.35
CHD3-211ENST00000481999 HMGXB3Q12766 1538 aa23.42■■□□□ 1.34
CHD3-211ENST00000481999 SOGA1O94964 1423 aa23.34■■□□□ 1.33
CHD3-211ENST00000481999 WRNQ14191 1432 aaPredicted RBP eCLIP23.33■■□□□ 1.32
CHD3-211ENST00000481999 RUSC2Q8N2Y8 1516 aa23.3■■□□□ 1.32
CHD3-211ENST00000481999 SYNJ1O43426 1573 aa23.29■■□□□ 1.32
CHD3-211ENST00000481999 PCGF6Q9BYE7 350 aa23.19■■□□□ 1.3
CHD3-211ENST00000481999 HRCP23327 699 aa23.12■■□□□ 1.29
CHD3-211ENST00000481999 CFTRP13569 1480 aa23.09■■□□□ 1.29
CHD3-211ENST00000481999 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
CHD3-211ENST00000481999 TOP2BQ02880 1626 aa23■■□□□ 1.27
CHD3-211ENST00000481999 PPARGC1BQ86YN6 1023 aaKnown RBP22.99■■□□□ 1.27
CHD3-211ENST00000481999 CUX1P39880 1505 aa22.98■■□□□ 1.27
CHD3-211ENST00000481999 CADPSQ9ULU8 1353 aa22.98■■□□□ 1.27
CHD3-211ENST00000481999 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
CHD3-211ENST00000481999 NESP48681 1621 aa22.92■■□□□ 1.26
CHD3-211ENST00000481999 EEA1Q15075 1411 aa22.92■■□□□ 1.26
CHD3-211ENST00000481999 BIVM-ERCC5R4GMW8 1640 aa22.92■■□□□ 1.26
CHD3-211ENST00000481999 CEP162Q5TB80 1403 aa22.85■■□□□ 1.25
CHD3-211ENST00000481999 PRDM2Q13029 1718 aa22.83■■□□□ 1.25
CHD3-211ENST00000481999 LAMC3Q9Y6N6 1575 aa22.82■■□□□ 1.24
CHD3-211ENST00000481999 GOLGA3Q08378 1498 aa22.81■■□□□ 1.24
CHD3-211ENST00000481999 RANGAP1P46060 587 aaPredicted RBP22.8■■□□□ 1.24
CHD3-211ENST00000481999 TRIM26Q12899 539 aaPredicted RBP22.8■■□□□ 1.24
CHD3-211ENST00000481999 TNIKQ9UKE5 1360 aa22.8■■□□□ 1.24
CHD3-211ENST00000481999 RAPGEF2Q9Y4G8 1499 aa22.79■■□□□ 1.24
CHD3-211ENST00000481999 FANCD2Q9BXW9 1451 aa22.78■■□□□ 1.24
CHD3-211ENST00000481999 TTBK1Q5TCY1 1321 aaPredicted RBP22.76■■□□□ 1.23
CHD3-211ENST00000481999 CEP164Q9UPV0 1460 aa22.75■■□□□ 1.23
CHD3-211ENST00000481999 KIF21BO75037 1637 aa22.71■■□□□ 1.23
CHD3-211ENST00000481999 FGD5Q6ZNL6 1462 aa22.68■■□□□ 1.22
CHD3-211ENST00000481999 PDS5BQ9NTI5 1447 aa22.67■■□□□ 1.22
CHD3-211ENST00000481999 ERCC6Q03468 1493 aa22.66■■□□□ 1.22
CHD3-211ENST00000481999 KIF27Q86VH2 1401 aa22.64■■□□□ 1.21
CHD3-211ENST00000481999 CUX2O14529 1486 aa22.62■■□□□ 1.21
CHD3-211ENST00000481999 KIF21AQ7Z4S6 1674 aa22.61■■□□□ 1.21
CHD3-211ENST00000481999 PRXQ9BXM0 1461 aa22.59■■□□□ 1.21
CHD3-211ENST00000481999 RAD54L2Q9Y4B4 1467 aa22.58■■□□□ 1.21
CHD3-211ENST00000481999 CLIP1P30622 1438 aa22.56■■□□□ 1.2
CHD3-211ENST00000481999 TOPBP1Q92547 1522 aa22.55■■□□□ 1.2
CHD3-211ENST00000481999 POLA1P09884 1462 aaPredicted RBP22.51■■□□□ 1.19
CHD3-211ENST00000481999 DNMBPQ6XZF7 1577 aa22.51■■□□□ 1.19
CHD3-211ENST00000481999 URB2Q14146 1524 aaKnown RBP22.51■■□□□ 1.19
CHD3-211ENST00000481999 IGF1RP08069 1367 aa22.5■■□□□ 1.19
CHD3-211ENST00000481999 ERICH3Q5RHP9 1530 aa22.46■■□□□ 1.19
CHD3-211ENST00000481999 THOC2Q8NI27 1593 aaKnown RBP22.45■■□□□ 1.18
CHD3-211ENST00000481999 MRC2Q9UBG0 1479 aa22.43■■□□□ 1.18
CHD3-211ENST00000481999 CARMIL1Q5VZK9 1371 aa22.38■■□□□ 1.17
CHD3-211ENST00000481999 TDRD9Q8NDG6 1382 aaKnown RBP22.35■■□□□ 1.17
CHD3-211ENST00000481999 ABCA10Q8WWZ4 1543 aa22.35■■□□□ 1.17
CHD3-211ENST00000481999 VPS8Q8N3P4 1428 aa22.35■■□□□ 1.17
CHD3-211ENST00000481999 WDR62O43379 1518 aa22.34■■□□□ 1.17
CHD3-211ENST00000481999 ZEB1P37275 1124 aaPredicted RBP22.31■■□□□ 1.16
CHD3-211ENST00000481999 ARAP1Q96P48 1450 aa22.31■■□□□ 1.16
CHD3-211ENST00000481999 ARHGAP35Q9NRY4 1499 aa22.24■■□□□ 1.15
CHD3-211ENST00000481999 WDR97A6NE52 1622 aa22.23■■□□□ 1.15
CHD3-211ENST00000481999 P3H3Q8IVL6 736 aa22.2■■□□□ 1.14
CHD3-211ENST00000481999 APLP2Q06481 763 aa22.18■■□□□ 1.14
CHD3-211ENST00000481999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.18■■□□□ 1.14
CHD3-211ENST00000481999 GAPVD1Q14C86 1478 aa22.16■■□□□ 1.14
CHD3-211ENST00000481999 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
CHD3-211ENST00000481999 TARBP1Q13395 1621 aaKnown RBP22.15■■□□□ 1.14
CHD3-211ENST00000481999 KANK4Q5T7N3 995 aaPredicted RBP22.15■■□□□ 1.14
CHD3-211ENST00000481999 AQRO60306 1485 aaKnown RBP eCLIP22.13■■□□□ 1.132e-6■■■□□ 16.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms