RNA–Protein interactions for RNA: ENST00000481152.2

CHCHD3-205, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 2

Gene CHCHD3, Length 1,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-205ENST00000481152 AEBP2Q6ZN18 517 aaPredicted RBP24.8■■□□□ 1.56
CHCHD3-205ENST00000481152 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
CHCHD3-205ENST00000481152 SENP3Q9H4L4 574 aaPredicted RBP21.1■□□□□ 0.97
CHCHD3-205ENST00000481152 PHF23Q9BUL5 403 aaPredicted RBP21.05■□□□□ 0.96
CHCHD3-205ENST00000481152 FOXD1Q16676 465 aa19.6■□□□□ 0.73
CHCHD3-205ENST00000481152 PLPPR3Q6T4P5 718 aa19.35■□□□□ 0.69
CHCHD3-205ENST00000481152 PPP6R1Q9UPN7 881 aa18.66■□□□□ 0.58
CHCHD3-205ENST00000481152 ADRA2BP18089 450 aa18.62■□□□□ 0.57
CHCHD3-205ENST00000481152 PIAS4Q8N2W9 510 aaPredicted RBP18.42■□□□□ 0.54
CHCHD3-205ENST00000481152 MSH5O43196 834 aa18.18■□□□□ 0.5
CHCHD3-205ENST00000481152 SCAF1Q9H7N4 1312 aaKnown RBP17.03■□□□□ 0.32
CHCHD3-205ENST00000481152 PPP4R3CPQ6ZMV5 832 aa17.02■□□□□ 0.31
CHCHD3-205ENST00000481152 POTEDQ86YR6 584 aa17.02■□□□□ 0.31
CHCHD3-205ENST00000481152 MAPK8IP2Q13387 824 aaPredicted RBP16.98■□□□□ 0.31
CHCHD3-205ENST00000481152 DMRT2Q9Y5R5 561 aa16.79■□□□□ 0.28
CHCHD3-205ENST00000481152 CNKSR2Q8WXI2 1034 aa16.6■□□□□ 0.25
CHCHD3-205ENST00000481152 NCBP3Q53F19 620 aaKnown RBP16.5■□□□□ 0.23
CHCHD3-205ENST00000481152 HOXD11P31277 338 aaPredicted RBP16.35■□□□□ 0.21
CHCHD3-205ENST00000481152 RNF216Q9NWF9 866 aaPredicted RBP16.34■□□□□ 0.21
CHCHD3-205ENST00000481152 KCNA4P22459 653 aa16.33■□□□□ 0.2
CHCHD3-205ENST00000481152 NPM3O75607 178 aaKnown RBP16.26■□□□□ 0.19
CHCHD3-205ENST00000481152 DCAF8L1A6NGE4 600 aa16.08■□□□□ 0.16
CHCHD3-205ENST00000481152 DNAJC5BQ9UF47 199 aa15.83■□□□□ 0.12
CHCHD3-205ENST00000481152 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.58■□□□□ 0.081e-6■■□□□ 12
CHCHD3-205ENST00000481152 RNF39Q9H2S5 420 aa15.56■□□□□ 0.08
CHCHD3-205ENST00000481152 SLC4A1APQ9BWU0 796 aaKnown RBP15.5■□□□□ 0.07
CHCHD3-205ENST00000481152 SLC4A2P04920 1241 aa15.42■□□□□ 0.06
CHCHD3-205ENST00000481152 C1QBPQ07021 282 aaKnown RBP15.36■□□□□ 0.05
CHCHD3-205ENST00000481152 CACNB1Q02641 598 aaPredicted RBP15.34■□□□□ 0.05
CHCHD3-205ENST00000481152 U3KPZ7 1027 aaPredicted RBP15.3■□□□□ 0.04
CHCHD3-205ENST00000481152 FOXD4L1Q9NU39 408 aa15.11■□□□□ 0.01
CHCHD3-205ENST00000481152 ZBTB22O15209 634 aa15.03■□□□□ -0
CHCHD3-205ENST00000481152 MYCNP04198 464 aaPredicted RBP15.03■□□□□ -0
CHCHD3-205ENST00000481152 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.01□□□□□ -0.01
CHCHD3-205ENST00000481152 HNRNPUL2Q1KMD3 747 aaKnown RBP15.01□□□□□ -0.01
CHCHD3-205ENST00000481152 SAMD1Q6SPF0 538 aaPredicted RBP14.95□□□□□ -0.02
CHCHD3-205ENST00000481152 SPINK5Q9NQ38 1064 aaPredicted RBP14.95□□□□□ -0.02
CHCHD3-205ENST00000481152 APLP2Q06481 763 aa14.92□□□□□ -0.02
CHCHD3-205ENST00000481152 CAPN15O75808 1086 aa14.9□□□□□ -0.02
CHCHD3-205ENST00000481152 TRHP20396 242 aaPredicted RBP14.76□□□□□ -0.05
CHCHD3-205ENST00000481152 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
CHCHD3-205ENST00000481152 ZNF219Q9P2Y4 722 aaPredicted RBP14.76□□□□□ -0.05
CHCHD3-205ENST00000481152 DSG3P32926 999 aa14.71□□□□□ -0.06
CHCHD3-205ENST00000481152 CSRNP3Q8WYN3 585 aa14.71□□□□□ -0.06
CHCHD3-205ENST00000481152 ATF5Q9Y2D1 282 aaPredicted RBP14.64□□□□□ -0.07
CHCHD3-205ENST00000481152 ATXN8OSP0DMR3 200 aa14.6□□□□□ -0.07
CHCHD3-205ENST00000481152 ABCB7O75027 752 aa14.6□□□□□ -0.07
CHCHD3-205ENST00000481152 POLA2Q14181 598 aa14.47□□□□□ -0.09
CHCHD3-205ENST00000481152 ZBTB12Q9Y330 459 aaPredicted RBP14.22□□□□□ -0.13
CHCHD3-205ENST00000481152 FBLN2P98095 1184 aa14.05□□□□□ -0.16
CHCHD3-205ENST00000481152 RBM42Q9BTD8 480 aaKnown RBP14.03□□□□□ -0.16
CHCHD3-205ENST00000481152 MKRN4PQ13434 485 aaPredicted RBP14□□□□□ -0.17
CHCHD3-205ENST00000481152 OSCARQ8IYS5 282 aa14□□□□□ -0.17
CHCHD3-205ENST00000481152 SPDYE2BA6NHP3 402 aa13.81□□□□□ -0.2
CHCHD3-205ENST00000481152 SPDYE6P0CI01 402 aa13.81□□□□□ -0.2
CHCHD3-205ENST00000481152 SPDYE2Q495Y8 402 aa13.81□□□□□ -0.2
CHCHD3-205ENST00000481152 AKT1S1Q96B36 256 aa13.8□□□□□ -0.2
CHCHD3-205ENST00000481152 ZNF692Q9BU19 519 aaPredicted RBP13.71□□□□□ -0.22
CHCHD3-205ENST00000481152 SSUH2Q9Y2M2 353 aa13.69□□□□□ -0.22
CHCHD3-205ENST00000481152 REM2Q8IYK8 340 aaPredicted RBP13.67□□□□□ -0.22
CHCHD3-205ENST00000481152 SPDYE4A6NLX3 237 aa13.56□□□□□ -0.24
CHCHD3-205ENST00000481152 CHRDL2Q6WN34 429 aa13.56□□□□□ -0.24
CHCHD3-205ENST00000481152 PITPNM1O00562 1244 aa13.52□□□□□ -0.25
CHCHD3-205ENST00000481152 PABPN1Q86U42 306 aaKnown RBP eCLIP13.52□□□□□ -0.25
CHCHD3-205ENST00000481152 SPDYE1Q8NFV5 336 aaPredicted RBP13.46□□□□□ -0.25
CHCHD3-205ENST00000481152 POTEHQ6S545 545 aa13.43□□□□□ -0.26
CHCHD3-205ENST00000481152 CLEC11AQ9Y240 323 aa13.41□□□□□ -0.26
CHCHD3-205ENST00000481152 PIP4P2Q8N4L2 257 aa13.32□□□□□ -0.28
CHCHD3-205ENST00000481152 FKBP8Q14318 412 aa13.32□□□□□ -0.28
CHCHD3-205ENST00000481152 FXR2P51116 673 aaKnown RBP eCLIP13.31□□□□□ -0.28
CHCHD3-205ENST00000481152 PROM2Q8N271 834 aa13.31□□□□□ -0.28
CHCHD3-205ENST00000481152 PRR29P0C7W0 189 aa13.25□□□□□ -0.29
CHCHD3-205ENST00000481152 STAG3Q9UJ98 1225 aa13.24□□□□□ -0.29
CHCHD3-205ENST00000481152 PRKAR2AP13861 404 aaKnown RBP13.17□□□□□ -0.3
CHCHD3-205ENST00000481152 CHADLQ6NUI6 762 aa13.11□□□□□ -0.31
CHCHD3-205ENST00000481152 CREBZFQ9NS37 354 aa13.03□□□□□ -0.32
CHCHD3-205ENST00000481152 FARP1Q9Y4F1 1045 aaPredicted RBP12.97□□□□□ -0.33
CHCHD3-205ENST00000481152 HAX1O00165 279 aa12.95□□□□□ -0.34
CHCHD3-205ENST00000481152 FBXO3Q9UK99 471 aa12.92□□□□□ -0.34
CHCHD3-205ENST00000481152 C19orf67A6NJJ6 358 aa12.87□□□□□ -0.35
CHCHD3-205ENST00000481152 MIER1Q8N108 512 aa12.87□□□□□ -0.35
CHCHD3-205ENST00000481152 MNX1P50219 401 aaPredicted RBP12.86□□□□□ -0.35
CHCHD3-205ENST00000481152 PLEKHG5O94827 1062 aa12.83□□□□□ -0.36
CHCHD3-205ENST00000481152 PLCD3Q8N3E9 789 aa12.83□□□□□ -0.36
CHCHD3-205ENST00000481152 EVX2Q03828 476 aa12.82□□□□□ -0.36
CHCHD3-205ENST00000481152 NPM1P06748 294 aaKnown RBP eCLIP12.81□□□□□ -0.36
CHCHD3-205ENST00000481152 SP7Q8TDD2 431 aaPredicted RBP12.79□□□□□ -0.36
CHCHD3-205ENST00000481152 CD44P16070 742 aaKnown RBP12.78□□□□□ -0.36
CHCHD3-205ENST00000481152 VASPP50552 380 aaPredicted RBP12.76□□□□□ -0.37
CHCHD3-205ENST00000481152 ZBTB47Q9UFB7 747 aaPredicted RBP12.71□□□□□ -0.37
CHCHD3-205ENST00000481152 ZRANB1Q9UGI0 708 aa12.67□□□□□ -0.38
CHCHD3-205ENST00000481152 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
CHCHD3-205ENST00000481152 ZNF579Q8NAF0 562 aaKnown RBP12.61□□□□□ -0.39
CHCHD3-205ENST00000481152 RASEFQ8IZ41 740 aa12.59□□□□□ -0.39
CHCHD3-205ENST00000481152 KLHL34Q8N239 644 aa12.59□□□□□ -0.39
CHCHD3-205ENST00000481152 NUBP1P53384 320 aa12.58□□□□□ -0.4
CHCHD3-205ENST00000481152 TSPYL2Q9H2G4 693 aaPredicted RBP12.58□□□□□ -0.4
CHCHD3-205ENST00000481152 GABBR2O75899 941 aa12.57□□□□□ -0.4
CHCHD3-205ENST00000481152 IFNLR1Q8IU57 520 aaPredicted RBP12.56□□□□□ -0.4
CHCHD3-205ENST00000481152 PHF12Q96QT6 1004 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms