RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 NISCHQ9Y2I1 1504 aa22.53■■□□□ 1.2
VPS52-217ENST00000478934 SHROOM4Q9ULL8 1493 aa19.44■□□□□ 0.7
VPS52-217ENST00000478934 SUPT5HO00267 1087 aaKnown RBP19.02■□□□□ 0.64
VPS52-217ENST00000478934 ZCCHC6Q5VYS8 1495 aaKnown RBP19.02■□□□□ 0.64
VPS52-217ENST00000478934 CCDC180Q9P1Z9 1646 aa19.02■□□□□ 0.63
VPS52-217ENST00000478934 DCAF8L2P0C7V8 631 aa19.01■□□□□ 0.63
VPS52-217ENST00000478934 CHIC1Q5VXU3 224 aa18.37■□□□□ 0.53
VPS52-217ENST00000478934 DCAF1Q9Y4B6 1507 aa18.34■□□□□ 0.53
VPS52-217ENST00000478934 MYO15BQ96JP2 1530 aa18.31■□□□□ 0.52
VPS52-217ENST00000478934 SCRIBQ14160 1630 aa18.05■□□□□ 0.48
VPS52-217ENST00000478934 ABCC9O60706 1549 aa17.98■□□□□ 0.47
VPS52-217ENST00000478934 LOC105371045A0A1W2PR82 267 aa17.95■□□□□ 0.46
VPS52-217ENST00000478934 RSF1Q96T23 1441 aaPredicted RBP17.88■□□□□ 0.45
VPS52-217ENST00000478934 PCGF6Q9BYE7 350 aa17.81■□□□□ 0.44
VPS52-217ENST00000478934 CECR2Q9BXF3 1484 aa17.72■□□□□ 0.43
VPS52-217ENST00000478934 HRCP23327 699 aa17.69■□□□□ 0.42
VPS52-217ENST00000478934 RB1CC1Q8TDY2 1594 aa17.68■□□□□ 0.42
VPS52-217ENST00000478934 NACADO15069 1562 aa17.66■□□□□ 0.42
VPS52-217ENST00000478934 FAM9AQ8IZU1 332 aaPredicted RBP17.63■□□□□ 0.41
VPS52-217ENST00000478934 TRIM41Q8WV44 630 aa17.62■□□□□ 0.41
VPS52-217ENST00000478934 EHMT2Q96KQ7 1210 aa17.6■□□□□ 0.41
VPS52-217ENST00000478934 MROH2BQ7Z745 1585 aa17.6■□□□□ 0.41
VPS52-217ENST00000478934 PPARGC1BQ86YN6 1023 aaKnown RBP17.58■□□□□ 0.4
VPS52-217ENST00000478934 WIZO95785 1651 aa17.49■□□□□ 0.39
VPS52-217ENST00000478934 TRIM26Q12899 539 aaPredicted RBP17.34■□□□□ 0.37
VPS52-217ENST00000478934 PABPN1Q86U42 306 aaKnown RBP eCLIP17.3■□□□□ 0.36
VPS52-217ENST00000478934 BAZ1AQ9NRL2 1556 aaPredicted RBP17.26■□□□□ 0.35
VPS52-217ENST00000478934 UNC13AQ9UPW8 1703 aa17.19■□□□□ 0.34
VPS52-217ENST00000478934 SMARCA4P51532 1647 aa17.15■□□□□ 0.34
VPS52-217ENST00000478934 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
VPS52-217ENST00000478934 ABCC8Q09428 1581 aa17.13■□□□□ 0.33
VPS52-217ENST00000478934 EIF4G1Q04637 1599 aaKnown RBP17.12■□□□□ 0.33
VPS52-217ENST00000478934 TOP2AP11388 1531 aaKnown RBP17.11■□□□□ 0.33
VPS52-217ENST00000478934 SMARCA2P51531 1590 aa17.06■□□□□ 0.32
VPS52-217ENST00000478934 BICRAQ9NZM4 1560 aa17.03■□□□□ 0.32
VPS52-217ENST00000478934 SOGA1O94964 1423 aa16.98■□□□□ 0.31
VPS52-217ENST00000478934 TTBK1Q5TCY1 1321 aaPredicted RBP16.97■□□□□ 0.31
VPS52-217ENST00000478934 RUSC2Q8N2Y8 1516 aa16.93■□□□□ 0.3
VPS52-217ENST00000478934 CSRNP3Q8WYN3 585 aa16.83■□□□□ 0.28
VPS52-217ENST00000478934 UBTFP17480 764 aaKnown RBP16.83■□□□□ 0.28
VPS52-217ENST00000478934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.82■□□□□ 0.28
VPS52-217ENST00000478934 ZEB1P37275 1124 aaPredicted RBP16.81■□□□□ 0.28
VPS52-217ENST00000478934 CEP162Q5TB80 1403 aa16.79■□□□□ 0.28
VPS52-217ENST00000478934 ATAD2BQ9ULI0 1458 aa16.78■□□□□ 0.28
VPS52-217ENST00000478934 WRNQ14191 1432 aaPredicted RBP eCLIP16.77■□□□□ 0.28
VPS52-217ENST00000478934 PEG3Q9GZU2 1588 aa16.75■□□□□ 0.27
VPS52-217ENST00000478934 BAZ1BQ9UIG0 1483 aaKnown RBP16.72■□□□□ 0.27
VPS52-217ENST00000478934 TNIKQ9UKE5 1360 aa16.72■□□□□ 0.27
VPS52-217ENST00000478934 SYNJ1O43426 1573 aa16.7■□□□□ 0.26
VPS52-217ENST00000478934 CCER1Q8TC90 406 aaPredicted RBP16.68■□□□□ 0.26
VPS52-217ENST00000478934 RANGAP1P46060 587 aaPredicted RBP16.67■□□□□ 0.26
VPS52-217ENST00000478934 EEA1Q15075 1411 aa16.64■□□□□ 0.25
VPS52-217ENST00000478934 GOLGA3Q08378 1498 aa16.62■□□□□ 0.25
VPS52-217ENST00000478934 RAPGEF2Q9Y4G8 1499 aa16.53■□□□□ 0.24
VPS52-217ENST00000478934 CEP164Q9UPV0 1460 aa16.52■□□□□ 0.23
VPS52-217ENST00000478934 CLIP1P30622 1438 aa16.49■□□□□ 0.23
VPS52-217ENST00000478934 HNRNPUL2Q1KMD3 747 aaKnown RBP16.47■□□□□ 0.23
VPS52-217ENST00000478934 SCAF1Q9H7N4 1312 aaKnown RBP16.46■□□□□ 0.22
VPS52-217ENST00000478934 KIF21BO75037 1637 aa16.44■□□□□ 0.22
VPS52-217ENST00000478934 TOP2BQ02880 1626 aa16.42■□□□□ 0.22
VPS52-217ENST00000478934 NCAPD3P42695 1498 aa16.42■□□□□ 0.22
VPS52-217ENST00000478934 VPS8Q8N3P4 1428 aa16.37■□□□□ 0.21
VPS52-217ENST00000478934 CUX1P39880 1505 aa16.36■□□□□ 0.21
VPS52-217ENST00000478934 APLP2Q06481 763 aa16.34■□□□□ 0.21
VPS52-217ENST00000478934 HMGXB3Q12766 1538 aa16.34■□□□□ 0.21
VPS52-217ENST00000478934 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
VPS52-217ENST00000478934 DIEXFQ68CQ4 756 aaKnown RBP16.32■□□□□ 0.2
VPS52-217ENST00000478934 CFTRP13569 1480 aa16.29■□□□□ 0.2
VPS52-217ENST00000478934 PRXQ9BXM0 1461 aa16.29■□□□□ 0.2
VPS52-217ENST00000478934 KANK4Q5T7N3 995 aaPredicted RBP16.28■□□□□ 0.2
VPS52-217ENST00000478934 NEUROD1Q13562 356 aa16.26■□□□□ 0.19
VPS52-217ENST00000478934 ARAP1Q96P48 1450 aa16.24■□□□□ 0.19
VPS52-217ENST00000478934 KIF27Q86VH2 1401 aa16.23■□□□□ 0.19
VPS52-217ENST00000478934 ERICH3Q5RHP9 1530 aa16.18■□□□□ 0.18
VPS52-217ENST00000478934 ACIN1Q9UKV3 1341 aaKnown RBP16.18■□□□□ 0.18
VPS52-217ENST00000478934 ZNF316A6NFI3 1004 aaPredicted RBP16.16■□□□□ 0.18
VPS52-217ENST00000478934 CADPSQ9ULU8 1353 aa16.16■□□□□ 0.18
VPS52-217ENST00000478934 CUX2O14529 1486 aa16.15■□□□□ 0.18
VPS52-217ENST00000478934 IGF1RP08069 1367 aa16.13■□□□□ 0.17
VPS52-217ENST00000478934 YTHDC1Q96MU7 727 aaKnown RBP16.13■□□□□ 0.17
VPS52-217ENST00000478934 ARHGAP35Q9NRY4 1499 aa16.11■□□□□ 0.17
VPS52-217ENST00000478934 ITGAEP38570 1179 aa16.1■□□□□ 0.17
VPS52-217ENST00000478934 GTF3C3Q9Y5Q9 886 aa16.1■□□□□ 0.17
VPS52-217ENST00000478934 CC2D2AQ9P2K1 1620 aa16.09■□□□□ 0.17
VPS52-217ENST00000478934 FGD5Q6ZNL6 1462 aa16.08■□□□□ 0.16
VPS52-217ENST00000478934 P3H3Q8IVL6 736 aa16.08■□□□□ 0.16
VPS52-217ENST00000478934 CARMIL1Q5VZK9 1371 aa16.05■□□□□ 0.16
VPS52-217ENST00000478934 NESP48681 1621 aa16.03■□□□□ 0.16
VPS52-217ENST00000478934 MIER1Q8N108 512 aa16.02■□□□□ 0.16
VPS52-217ENST00000478934 CENPBP07199 599 aaPredicted RBP16.02■□□□□ 0.15
VPS52-217ENST00000478934 RAD54L2Q9Y4B4 1467 aa16.01■□□□□ 0.15
VPS52-217ENST00000478934 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
VPS52-217ENST00000478934 DHX57Q6P158 1386 aaKnown RBP16.01■□□□□ 0.15
VPS52-217ENST00000478934 FANCD2Q9BXW9 1451 aa16■□□□□ 0.15
VPS52-217ENST00000478934 ATP1B4Q9UN42 357 aaPredicted RBP16■□□□□ 0.15
VPS52-217ENST00000478934 PRDM2Q13029 1718 aa15.98■□□□□ 0.15
VPS52-217ENST00000478934 RRBP1Q9P2E9 1410 aaKnown RBP15.96■□□□□ 0.15
VPS52-217ENST00000478934 CCNB3Q8WWL7 1395 aa15.95■□□□□ 0.14
VPS52-217ENST00000478934 POLA1P09884 1462 aaPredicted RBP15.89■□□□□ 0.13
VPS52-217ENST00000478934 TOPBP1Q92547 1522 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms