RNA–Protein interactions for RNA: ENST00000477949.1

USP33-208, Transcript of ubiquitin specific peptidase 33, humanhuman

TSL 2

Gene USP33, Length 663 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP33-208ENST00000477949 AEBP2Q6ZN18 517 aaPredicted RBP29.23■■■□□ 2.27
USP33-208ENST00000477949 CHIC1Q5VXU3 224 aa27.82■■■□□ 2.04
USP33-208ENST00000477949 SENP3Q9H4L4 574 aaPredicted RBP24.98■■□□□ 1.59
USP33-208ENST00000477949 PHF23Q9BUL5 403 aaPredicted RBP24.67■■□□□ 1.54
USP33-208ENST00000477949 FOXD1Q16676 465 aa23.25■■□□□ 1.31
USP33-208ENST00000477949 PLPPR3Q6T4P5 718 aa22.25■■□□□ 1.15
USP33-208ENST00000477949 MSH5O43196 834 aa21.78■■□□□ 1.08
USP33-208ENST00000477949 PPP6R1Q9UPN7 881 aa21.76■■□□□ 1.07
USP33-208ENST00000477949 PIAS4Q8N2W9 510 aaPredicted RBP21.73■■□□□ 1.07
USP33-208ENST00000477949 ADRA2BP18089 450 aa21.7■■□□□ 1.06
USP33-208ENST00000477949 POTEDQ86YR6 584 aa21.19■□□□□ 0.98
USP33-208ENST00000477949 MAPK8IP2Q13387 824 aaPredicted RBP19.92■□□□□ 0.78
USP33-208ENST00000477949 SCAF1Q9H7N4 1312 aaKnown RBP19.92■□□□□ 0.78
USP33-208ENST00000477949 DMRT2Q9Y5R5 561 aa19.8■□□□□ 0.76
USP33-208ENST00000477949 PPP4R3CPQ6ZMV5 832 aa19.5■□□□□ 0.71
USP33-208ENST00000477949 CNKSR2Q8WXI2 1034 aa19.14■□□□□ 0.65
USP33-208ENST00000477949 HOXD11P31277 338 aaPredicted RBP19.09■□□□□ 0.65
USP33-208ENST00000477949 DCAF8L1A6NGE4 600 aa18.99■□□□□ 0.63
USP33-208ENST00000477949 RNF216Q9NWF9 866 aaPredicted RBP18.96■□□□□ 0.63
USP33-208ENST00000477949 NCBP3Q53F19 620 aaKnown RBP18.8■□□□□ 0.6
USP33-208ENST00000477949 CACNB1Q02641 598 aaPredicted RBP18.68■□□□□ 0.58
USP33-208ENST00000477949 RNF39Q9H2S5 420 aa18.57■□□□□ 0.56
USP33-208ENST00000477949 DNAJC5BQ9UF47 199 aa18.47■□□□□ 0.55
USP33-208ENST00000477949 NPM3O75607 178 aaKnown RBP18.46■□□□□ 0.55
USP33-208ENST00000477949 C1QBPQ07021 282 aaKnown RBP18.34■□□□□ 0.53
USP33-208ENST00000477949 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.21■□□□□ 0.51
USP33-208ENST00000477949 KCNA4P22459 653 aa18.12■□□□□ 0.49
USP33-208ENST00000477949 U3KPZ7 1027 aaPredicted RBP17.78■□□□□ 0.44
USP33-208ENST00000477949 SLC4A2P04920 1241 aa17.63■□□□□ 0.41
USP33-208ENST00000477949 SPINK5Q9NQ38 1064 aaPredicted RBP17.52■□□□□ 0.4
USP33-208ENST00000477949 CAPN15O75808 1086 aa17.51■□□□□ 0.39
USP33-208ENST00000477949 DSG3P32926 999 aa17.4■□□□□ 0.38
USP33-208ENST00000477949 APLP2Q06481 763 aa17.36■□□□□ 0.37
USP33-208ENST00000477949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.35■□□□□ 0.37
USP33-208ENST00000477949 HNRNPUL2Q1KMD3 747 aaKnown RBP17.35■□□□□ 0.37
USP33-208ENST00000477949 TRHP20396 242 aaPredicted RBP17.24■□□□□ 0.35
USP33-208ENST00000477949 SAMD1Q6SPF0 538 aaPredicted RBP17.24■□□□□ 0.35
USP33-208ENST00000477949 ZNF219Q9P2Y4 722 aaPredicted RBP17.21■□□□□ 0.35
USP33-208ENST00000477949 SLC4A1APQ9BWU0 796 aaKnown RBP17.13■□□□□ 0.33
USP33-208ENST00000477949 NISCHQ9Y2I1 1504 aa17.1■□□□□ 0.33
USP33-208ENST00000477949 MYCNP04198 464 aaPredicted RBP17.09■□□□□ 0.33
USP33-208ENST00000477949 ABCB7O75027 752 aa17.08■□□□□ 0.32
USP33-208ENST00000477949 FOXD4L1Q9NU39 408 aa16.92■□□□□ 0.3
USP33-208ENST00000477949 POLA2Q14181 598 aa16.8■□□□□ 0.28
USP33-208ENST00000477949 ATF5Q9Y2D1 282 aaPredicted RBP16.66■□□□□ 0.26
USP33-208ENST00000477949 ZBTB22O15209 634 aa16.63■□□□□ 0.25
USP33-208ENST00000477949 RBM42Q9BTD8 480 aaKnown RBP16.63■□□□□ 0.25
USP33-208ENST00000477949 POTEHQ6S545 545 aa16.62■□□□□ 0.25
USP33-208ENST00000477949 ZBTB12Q9Y330 459 aaPredicted RBP16.47■□□□□ 0.23
USP33-208ENST00000477949 ATXN8OSP0DMR3 200 aa16.44■□□□□ 0.22
USP33-208ENST00000477949 AKT1S1Q96B36 256 aa16.26■□□□□ 0.19
USP33-208ENST00000477949 CHRDL2Q6WN34 429 aa16.23■□□□□ 0.19
USP33-208ENST00000477949 OSCARQ8IYS5 282 aa16.2■□□□□ 0.18
USP33-208ENST00000477949 REM2Q8IYK8 340 aaPredicted RBP16.09■□□□□ 0.17
USP33-208ENST00000477949 ABCC9O60706 1549 aa16.09■□□□□ 0.17
USP33-208ENST00000477949 FBLN2P98095 1184 aa16.07■□□□□ 0.16
USP33-208ENST00000477949 SPDYE2BA6NHP3 402 aa15.96■□□□□ 0.15
USP33-208ENST00000477949 SPDYE6P0CI01 402 aa15.96■□□□□ 0.15
USP33-208ENST00000477949 SPDYE2Q495Y8 402 aa15.96■□□□□ 0.15
USP33-208ENST00000477949 CSRNP3Q8WYN3 585 aa15.93■□□□□ 0.14
USP33-208ENST00000477949 MKRN4PQ13434 485 aaPredicted RBP15.9■□□□□ 0.14
USP33-208ENST00000477949 PITPNM1O00562 1244 aa15.88■□□□□ 0.13
USP33-208ENST00000477949 PIP4P2Q8N4L2 257 aa15.84■□□□□ 0.13
USP33-208ENST00000477949 ZNF692Q9BU19 519 aaPredicted RBP15.78■□□□□ 0.12
USP33-208ENST00000477949 FXR2P51116 673 aaKnown RBP eCLIP15.77■□□□□ 0.12
USP33-208ENST00000477949 SSUH2Q9Y2M2 353 aa15.71■□□□□ 0.11
USP33-208ENST00000477949 EHMT2Q96KQ7 1210 aa15.69■□□□□ 0.1
USP33-208ENST00000477949 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
USP33-208ENST00000477949 CLEC11AQ9Y240 323 aa15.63■□□□□ 0.09
USP33-208ENST00000477949 CCDC180Q9P1Z9 1646 aa15.61■□□□□ 0.09
USP33-208ENST00000477949 HAX1O00165 279 aa15.59■□□□□ 0.09
USP33-208ENST00000477949 SP7Q8TDD2 431 aaPredicted RBP15.59■□□□□ 0.09
USP33-208ENST00000477949 PABPN1Q86U42 306 aaKnown RBP eCLIP15.52■□□□□ 0.08
USP33-208ENST00000477949 PRKAR2AP13861 404 aaKnown RBP15.5■□□□□ 0.07
USP33-208ENST00000477949 PRR29P0C7W0 189 aa15.4■□□□□ 0.06
USP33-208ENST00000477949 DNAJC5Q9H3Z4 198 aa15.36■□□□□ 0.05
USP33-208ENST00000477949 EVX2Q03828 476 aa15.35■□□□□ 0.05
USP33-208ENST00000477949 CHADLQ6NUI6 762 aa15.3■□□□□ 0.04
USP33-208ENST00000477949 C19orf67A6NJJ6 358 aa15.26■□□□□ 0.03
USP33-208ENST00000477949 SPDYE4A6NLX3 237 aa15.2■□□□□ 0.02
USP33-208ENST00000477949 STAG3Q9UJ98 1225 aa15.15■□□□□ 0.02
USP33-208ENST00000477949 FARP1Q9Y4F1 1045 aaPredicted RBP15.11■□□□□ 0.01
USP33-208ENST00000477949 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
USP33-208ENST00000477949 GABBR2O75899 941 aa15.04■□□□□ -0
USP33-208ENST00000477949 CD44P16070 742 aaKnown RBP15□□□□□ -0.01
USP33-208ENST00000477949 CREBZFQ9NS37 354 aa14.99□□□□□ -0.01
USP33-208ENST00000477949 CLCN6P51797 869 aa14.87□□□□□ -0.03
USP33-208ENST00000477949 NACADO15069 1562 aa14.85□□□□□ -0.03
USP33-208ENST00000477949 PROM2Q8N271 834 aa14.82□□□□□ -0.04
USP33-208ENST00000477949 UNC13AQ9UPW8 1703 aa14.81□□□□□ -0.04
USP33-208ENST00000477949 ZRANB1Q9UGI0 708 aa14.81□□□□□ -0.04
USP33-208ENST00000477949 NPM1P06748 294 aaKnown RBP eCLIP14.77□□□□□ -0.05
USP33-208ENST00000477949 ZNF579Q8NAF0 562 aaKnown RBP14.77□□□□□ -0.05
USP33-208ENST00000477949 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.05
USP33-208ENST00000477949 MNX1P50219 401 aaPredicted RBP14.72□□□□□ -0.05
USP33-208ENST00000477949 PAK3O75914 559 aaPredicted RBP14.71□□□□□ -0.05
USP33-208ENST00000477949 POTEIP0CG38 1075 aa14.69□□□□□ -0.06
USP33-208ENST00000477949 DCBLD2Q96PD2 775 aa14.66□□□□□ -0.06
USP33-208ENST00000477949 LHX8Q68G74 356 aa14.65□□□□□ -0.06
USP33-208ENST00000477949 GALR2O43603 387 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms