RNA–Protein interactions for RNA: ENST00000477626.5

PRPF39-203, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,507 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-203ENST00000477626 NISCHQ9Y2I1 1504 aa28.55■■■□□ 2.16
PRPF39-203ENST00000477626 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
PRPF39-203ENST00000477626 ZCCHC6Q5VYS8 1495 aaKnown RBP24.1■■□□□ 1.45
PRPF39-203ENST00000477626 DCAF1Q9Y4B6 1507 aa23.84■■□□□ 1.41
PRPF39-203ENST00000477626 MYO15BQ96JP2 1530 aa23.56■■□□□ 1.36
PRPF39-203ENST00000477626 NACADO15069 1562 aa23.16■■□□□ 1.3
PRPF39-203ENST00000477626 ABCC9O60706 1549 aa23.08■■□□□ 1.29
PRPF39-203ENST00000477626 UNC13AQ9UPW8 1703 aa22.88■■□□□ 1.25
PRPF39-203ENST00000477626 RB1CC1Q8TDY2 1594 aa22.84■■□□□ 1.25
PRPF39-203ENST00000477626 SCRIBQ14160 1630 aa22.74■■□□□ 1.23
PRPF39-203ENST00000477626 SHROOM4Q9ULL8 1493 aa22.67■■□□□ 1.22
PRPF39-203ENST00000477626 BICRAQ9NZM4 1560 aa22.48■■□□□ 1.19
PRPF39-203ENST00000477626 DCAF8L2P0C7V8 631 aa22.47■■□□□ 1.19
PRPF39-203ENST00000477626 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
PRPF39-203ENST00000477626 RSF1Q96T23 1441 aaPredicted RBP22.08■■□□□ 1.13
PRPF39-203ENST00000477626 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
PRPF39-203ENST00000477626 SMARCA4P51532 1647 aa22■■□□□ 1.11
PRPF39-203ENST00000477626 BAZ1AQ9NRL2 1556 aaPredicted RBP21.97■■□□□ 1.11
PRPF39-203ENST00000477626 PEG3Q9GZU2 1588 aa21.95■■□□□ 1.1
PRPF39-203ENST00000477626 WIZO95785 1651 aa21.91■■□□□ 1.1
PRPF39-203ENST00000477626 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
PRPF39-203ENST00000477626 TOP2AP11388 1531 aaKnown RBP21.68■■□□□ 1.06
PRPF39-203ENST00000477626 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
PRPF39-203ENST00000477626 PABPN1Q86U42 306 aaKnown RBP eCLIP21.57■■□□□ 1.042e-9■■■□□ 16.8
PRPF39-203ENST00000477626 SMARCA2P51531 1590 aa21.54■■□□□ 1.04
PRPF39-203ENST00000477626 ATAD2BQ9ULI0 1458 aa21.49■■□□□ 1.03
PRPF39-203ENST00000477626 HMGXB3Q12766 1538 aa21.43■■□□□ 1.02
PRPF39-203ENST00000477626 CCDC88BA6NC98 1476 aa21.34■■□□□ 1.01
PRPF39-203ENST00000477626 NCAPD3P42695 1498 aa21.34■■□□□ 1.01
PRPF39-203ENST00000477626 CC2D2AQ9P2K1 1620 aa21.22■□□□□ 0.99
PRPF39-203ENST00000477626 BAZ1BQ9UIG0 1483 aaKnown RBP21.19■□□□□ 0.98
PRPF39-203ENST00000477626 PRDM2Q13029 1718 aa21.16■□□□□ 0.98
PRPF39-203ENST00000477626 CHIC1Q5VXU3 224 aa21.15■□□□□ 0.98
PRPF39-203ENST00000477626 ABCC8Q09428 1581 aa20.88■□□□□ 0.93
PRPF39-203ENST00000477626 CFTRP13569 1480 aa20.88■□□□□ 0.93
PRPF39-203ENST00000477626 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
PRPF39-203ENST00000477626 SYNJ1O43426 1573 aa20.82■□□□□ 0.92
PRPF39-203ENST00000477626 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
PRPF39-203ENST00000477626 CUX1P39880 1505 aa20.63■□□□□ 0.89
PRPF39-203ENST00000477626 LAMC3Q9Y6N6 1575 aa20.62■□□□□ 0.89
PRPF39-203ENST00000477626 WRNQ14191 1432 aaPredicted RBP eCLIP20.59■□□□□ 0.89
PRPF39-203ENST00000477626 CADPSQ9ULU8 1353 aa20.59■□□□□ 0.89
PRPF39-203ENST00000477626 DNAJC5BQ9UF47 199 aa20.49■□□□□ 0.87
PRPF39-203ENST00000477626 KIF21AQ7Z4S6 1674 aa20.49■□□□□ 0.87
PRPF39-203ENST00000477626 WDR97A6NE52 1622 aa20.48■□□□□ 0.87
PRPF39-203ENST00000477626 NESP48681 1621 aa20.47■□□□□ 0.87
PRPF39-203ENST00000477626 TRIM41Q8WV44 630 aa20.43■□□□□ 0.86
PRPF39-203ENST00000477626 RUSC2Q8N2Y8 1516 aa20.43■□□□□ 0.86
PRPF39-203ENST00000477626 SOGA1O94964 1423 aa20.42■□□□□ 0.86
PRPF39-203ENST00000477626 DNMBPQ6XZF7 1577 aa20.4■□□□□ 0.86
PRPF39-203ENST00000477626 FANCD2Q9BXW9 1451 aa20.39■□□□□ 0.85
PRPF39-203ENST00000477626 KIF21BO75037 1637 aa20.39■□□□□ 0.85
PRPF39-203ENST00000477626 EEA1Q15075 1411 aa20.36■□□□□ 0.85
PRPF39-203ENST00000477626 URB2Q14146 1524 aaKnown RBP20.32■□□□□ 0.84
PRPF39-203ENST00000477626 TOPBP1Q92547 1522 aa20.29■□□□□ 0.84
PRPF39-203ENST00000477626 TARBP1Q13395 1621 aaKnown RBP20.24■□□□□ 0.83
PRPF39-203ENST00000477626 FGD5Q6ZNL6 1462 aa20.23■□□□□ 0.83
PRPF39-203ENST00000477626 CEP164Q9UPV0 1460 aa20.21■□□□□ 0.83
PRPF39-203ENST00000477626 THOC2Q8NI27 1593 aaKnown RBP20.21■□□□□ 0.83
PRPF39-203ENST00000477626 ABCA5Q8WWZ7 1642 aa20.21■□□□□ 0.83
PRPF39-203ENST00000477626 PRXQ9BXM0 1461 aa20.19■□□□□ 0.82
PRPF39-203ENST00000477626 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
PRPF39-203ENST00000477626 WDR62O43379 1518 aa20.18■□□□□ 0.82
PRPF39-203ENST00000477626 ABCA10Q8WWZ4 1543 aa20.18■□□□□ 0.82
PRPF39-203ENST00000477626 POLA1P09884 1462 aaPredicted RBP20.18■□□□□ 0.82
PRPF39-203ENST00000477626 LOC105371045A0A1W2PR82 267 aa20.18■□□□□ 0.82
PRPF39-203ENST00000477626 PDS5BQ9NTI5 1447 aa20.13■□□□□ 0.81
PRPF39-203ENST00000477626 GOLGA3Q08378 1498 aa20.05■□□□□ 0.8
PRPF39-203ENST00000477626 MRC2Q9UBG0 1479 aa20.05■□□□□ 0.8
PRPF39-203ENST00000477626 CUX2O14529 1486 aa20.04■□□□□ 0.8
PRPF39-203ENST00000477626 RAPGEF2Q9Y4G8 1499 aa20.04■□□□□ 0.8
PRPF39-203ENST00000477626 TNIKQ9UKE5 1360 aa20.02■□□□□ 0.8
PRPF39-203ENST00000477626 PBRM1Q86U86 1689 aa20.01■□□□□ 0.79
PRPF39-203ENST00000477626 CUL7Q14999 1698 aa20.01■□□□□ 0.79
PRPF39-203ENST00000477626 RAD54L2Q9Y4B4 1467 aa20.01■□□□□ 0.79
PRPF39-203ENST00000477626 CSRNP3Q8WYN3 585 aa19.99■□□□□ 0.79
PRPF39-203ENST00000477626 KIF27Q86VH2 1401 aa19.99■□□□□ 0.79
PRPF39-203ENST00000477626 IGF1RP08069 1367 aa19.96■□□□□ 0.79
PRPF39-203ENST00000477626 CTTNBP2Q8WZ74 1663 aa19.89■□□□□ 0.77
PRPF39-203ENST00000477626 CEP162Q5TB80 1403 aa19.88■□□□□ 0.77
PRPF39-203ENST00000477626 FAM9AQ8IZU1 332 aaPredicted RBP19.88■□□□□ 0.77
PRPF39-203ENST00000477626 ADAMTS12P58397 1594 aa19.83■□□□□ 0.76
PRPF39-203ENST00000477626 EIF4G3O43432 1585 aaKnown RBP19.81■□□□□ 0.76
PRPF39-203ENST00000477626 IFT140Q96RY7 1462 aa19.8■□□□□ 0.76
PRPF39-203ENST00000477626 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
PRPF39-203ENST00000477626 ARAP1Q96P48 1450 aa19.76■□□□□ 0.75
PRPF39-203ENST00000477626 ZNF608Q9ULD9 1512 aaPredicted RBP19.73■□□□□ 0.75
PRPF39-203ENST00000477626 SAMD9Q5K651 1589 aa19.72■□□□□ 0.75
PRPF39-203ENST00000477626 CARMIL1Q5VZK9 1371 aa19.69■□□□□ 0.74
PRPF39-203ENST00000477626 ARHGAP35Q9NRY4 1499 aa19.68■□□□□ 0.74
PRPF39-203ENST00000477626 LRRIQ1Q96JM4 1722 aa19.62■□□□□ 0.73
PRPF39-203ENST00000477626 CLIP1P30622 1438 aa19.62■□□□□ 0.73
PRPF39-203ENST00000477626 GRIN2BQ13224 1484 aa19.62■□□□□ 0.73
PRPF39-203ENST00000477626 TDRD9Q8NDG6 1382 aaKnown RBP19.61■□□□□ 0.73
PRPF39-203ENST00000477626 ERCC6Q03468 1493 aa19.6■□□□□ 0.73
PRPF39-203ENST00000477626 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.732e-7■■■■□ 20.5
PRPF39-203ENST00000477626 VPS8Q8N3P4 1428 aa19.59■□□□□ 0.73
PRPF39-203ENST00000477626 EFCAB5A4FU69 1503 aa19.58■□□□□ 0.73
PRPF39-203ENST00000477626 FHAD1B1AJZ9 1412 aa19.57■□□□□ 0.72
PRPF39-203ENST00000477626 CFAP43Q8NDM7 1665 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms