RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 NISCHQ9Y2I1 1504 aa20.56■□□□□ 0.88
COL27A1-204ENST00000477421 DCAF8L2P0C7V8 631 aa19.68■□□□□ 0.74
COL27A1-204ENST00000477421 SHROOM4Q9ULL8 1493 aa19.18■□□□□ 0.66
COL27A1-204ENST00000477421 SUPT5HO00267 1087 aaKnown RBP19.15■□□□□ 0.66
COL27A1-204ENST00000477421 EHMT2Q96KQ7 1210 aa18.27■□□□□ 0.51
COL27A1-204ENST00000477421 FAM9AQ8IZU1 332 aaPredicted RBP17.95■□□□□ 0.46
COL27A1-204ENST00000477421 PCGF6Q9BYE7 350 aa17.87■□□□□ 0.45
COL27A1-204ENST00000477421 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
COL27A1-204ENST00000477421 TRIM41Q8WV44 630 aa17.6■□□□□ 0.41
COL27A1-204ENST00000477421 TTBK1Q5TCY1 1321 aaPredicted RBP17.59■□□□□ 0.41
COL27A1-204ENST00000477421 LOC105371045A0A1W2PR82 267 aa17.56■□□□□ 0.4
COL27A1-204ENST00000477421 PPARGC1BQ86YN6 1023 aaKnown RBP17.4■□□□□ 0.38
COL27A1-204ENST00000477421 SLC24A1O60721 1099 aa17.34■□□□□ 0.37
COL27A1-204ENST00000477421 RANGAP1P46060 587 aaPredicted RBP17.32■□□□□ 0.36
COL27A1-204ENST00000477421 ABCC9O60706 1549 aa17.21■□□□□ 0.35
COL27A1-204ENST00000477421 HRCP23327 699 aa17.16■□□□□ 0.34
COL27A1-204ENST00000477421 ZCCHC6Q5VYS8 1495 aaKnown RBP17.14■□□□□ 0.33
COL27A1-204ENST00000477421 UBTFP17480 764 aaKnown RBP17.13■□□□□ 0.33
COL27A1-204ENST00000477421 APLP2Q06481 763 aa17.1■□□□□ 0.33
COL27A1-204ENST00000477421 TRIM26Q12899 539 aaPredicted RBP17.08■□□□□ 0.32
COL27A1-204ENST00000477421 CCER1Q8TC90 406 aaPredicted RBP17.06■□□□□ 0.32
COL27A1-204ENST00000477421 PABPN1Q86U42 306 aaKnown RBP eCLIP17■□□□□ 0.314e-11■■■■□ 20.8
COL27A1-204ENST00000477421 ZEB1P37275 1124 aaPredicted RBP16.88■□□□□ 0.29
COL27A1-204ENST00000477421 MYO15BQ96JP2 1530 aa16.8■□□□□ 0.28
COL27A1-204ENST00000477421 ATP1B4Q9UN42 357 aaPredicted RBP16.79■□□□□ 0.28
COL27A1-204ENST00000477421 CCDC180Q9P1Z9 1646 aa16.79■□□□□ 0.28
COL27A1-204ENST00000477421 SCRIBQ14160 1630 aa16.78■□□□□ 0.28
COL27A1-204ENST00000477421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.77■□□□□ 0.27
COL27A1-204ENST00000477421 HNRNPUL2Q1KMD3 747 aaKnown RBP16.69■□□□□ 0.26
COL27A1-204ENST00000477421 YTHDC1Q96MU7 727 aaKnown RBP16.62■□□□□ 0.25
COL27A1-204ENST00000477421 ITGAEP38570 1179 aa16.6■□□□□ 0.25
COL27A1-204ENST00000477421 RSF1Q96T23 1441 aaPredicted RBP16.52■□□□□ 0.24
COL27A1-204ENST00000477421 CENPBP07199 599 aaPredicted RBP16.49■□□□□ 0.23
COL27A1-204ENST00000477421 CSRNP3Q8WYN3 585 aa16.42■□□□□ 0.22
COL27A1-204ENST00000477421 DCAF1Q9Y4B6 1507 aa16.36■□□□□ 0.21
COL27A1-204ENST00000477421 CECR2Q9BXF3 1484 aa16.34■□□□□ 0.21
COL27A1-204ENST00000477421 DIEXFQ68CQ4 756 aaKnown RBP16.32■□□□□ 0.2
COL27A1-204ENST00000477421 P3H3Q8IVL6 736 aa16.18■□□□□ 0.18
COL27A1-204ENST00000477421 FAM50AQ14320 339 aaKnown RBP16.16■□□□□ 0.18
COL27A1-204ENST00000477421 PELP1Q8IZL8 1130 aaKnown RBP16.15■□□□□ 0.18
COL27A1-204ENST00000477421 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
COL27A1-204ENST00000477421 NACADO15069 1562 aa16.1■□□□□ 0.17
COL27A1-204ENST00000477421 MROH2BQ7Z745 1585 aa16.1■□□□□ 0.17
COL27A1-204ENST00000477421 NEUROD1Q13562 356 aa16.07■□□□□ 0.16
COL27A1-204ENST00000477421 CNGB1Q14028 1251 aaPredicted RBP16.04■□□□□ 0.16
COL27A1-204ENST00000477421 ZNF316A6NFI3 1004 aaPredicted RBP16.01■□□□□ 0.15
COL27A1-204ENST00000477421 GTF3C3Q9Y5Q9 886 aa16.01■□□□□ 0.15
COL27A1-204ENST00000477421 ARID3CA6NKF2 412 aa16■□□□□ 0.15
COL27A1-204ENST00000477421 CEP162Q5TB80 1403 aa15.97■□□□□ 0.15
COL27A1-204ENST00000477421 SOGA1O94964 1423 aa15.96■□□□□ 0.15
COL27A1-204ENST00000477421 POLR3GLQ9BT43 218 aa15.95■□□□□ 0.14
COL27A1-204ENST00000477421 WRNQ14191 1432 aaPredicted RBP eCLIP15.91■□□□□ 0.14
COL27A1-204ENST00000477421 BAZ1AQ9NRL2 1556 aaPredicted RBP15.91■□□□□ 0.14
COL27A1-204ENST00000477421 ABCC8Q09428 1581 aa15.89■□□□□ 0.13
COL27A1-204ENST00000477421 CLIP1P30622 1438 aa15.89■□□□□ 0.13
COL27A1-204ENST00000477421 WIZO95785 1651 aa15.88■□□□□ 0.13
COL27A1-204ENST00000477421 NEFLP07196 543 aa15.87■□□□□ 0.13
COL27A1-204ENST00000477421 ACIN1Q9UKV3 1341 aaKnown RBP15.87■□□□□ 0.13
COL27A1-204ENST00000477421 CCDC88BA6NC98 1476 aa15.87■□□□□ 0.13
COL27A1-204ENST00000477421 TRIM52Q96A61 297 aa15.85■□□□□ 0.13
COL27A1-204ENST00000477421 FBLN2P98095 1184 aa15.83■□□□□ 0.13
COL27A1-204ENST00000477421 BAZ1BQ9UIG0 1483 aaKnown RBP15.8■□□□□ 0.12
COL27A1-204ENST00000477421 TNIKQ9UKE5 1360 aa15.8■□□□□ 0.12
COL27A1-204ENST00000477421 GOLGA3Q08378 1498 aa15.78■□□□□ 0.12
COL27A1-204ENST00000477421 SCAF1Q9H7N4 1312 aaKnown RBP15.78■□□□□ 0.12
COL27A1-204ENST00000477421 PLPPR3Q6T4P5 718 aa15.78■□□□□ 0.12
COL27A1-204ENST00000477421 BCANQ96GW7 911 aa15.75■□□□□ 0.11
COL27A1-204ENST00000477421 MIER1Q8N108 512 aa15.75■□□□□ 0.11
COL27A1-204ENST00000477421 EEA1Q15075 1411 aa15.73■□□□□ 0.11
COL27A1-204ENST00000477421 HIRIP3Q9BW71 556 aaPredicted RBP15.71■□□□□ 0.11
COL27A1-204ENST00000477421 ZNF326Q5BKZ1 582 aaKnown RBP15.69■□□□□ 0.1
COL27A1-204ENST00000477421 DAXXQ9UER7 740 aaPredicted RBP15.69■□□□□ 0.1
COL27A1-204ENST00000477421 RUSC2Q8N2Y8 1516 aa15.69■□□□□ 0.1
COL27A1-204ENST00000477421 MYT1LQ9UL68 1186 aa15.68■□□□□ 0.1
COL27A1-204ENST00000477421 CHIC2Q9UKJ5 165 aa15.66■□□□□ 0.1
COL27A1-204ENST00000477421 DDX10Q13206 875 aaKnown RBP15.65■□□□□ 0.1
COL27A1-204ENST00000477421 CEP164Q9UPV0 1460 aa15.65■□□□□ 0.1
COL27A1-204ENST00000477421 ZNF777Q9ULD5 760 aaPredicted RBP15.62■□□□□ 0.09
COL27A1-204ENST00000477421 KANK4Q5T7N3 995 aaPredicted RBP15.6■□□□□ 0.09
COL27A1-204ENST00000477421 ERICH6Q7L0X2 663 aa15.6■□□□□ 0.09
COL27A1-204ENST00000477421 RTN4Q9NQC3 1192 aaKnown RBP15.59■□□□□ 0.09
COL27A1-204ENST00000477421 ANP32CO43423 234 aa15.59■□□□□ 0.09
COL27A1-204ENST00000477421 TOP2AP11388 1531 aaKnown RBP15.57■□□□□ 0.08
COL27A1-204ENST00000477421 KIF27Q86VH2 1401 aa15.57■□□□□ 0.08
COL27A1-204ENST00000477421 SIN3AQ96ST3 1273 aa15.51■□□□□ 0.07
COL27A1-204ENST00000477421 SMARCA4P51532 1647 aa15.51■□□□□ 0.07
COL27A1-204ENST00000477421 MTUS2Q5JR59 1369 aa15.5■□□□□ 0.07
COL27A1-204ENST00000477421 RRP7BPQ9NSQ0 103 aa15.5■□□□□ 0.07
COL27A1-204ENST00000477421 TONSLQ96HA7 1378 aa15.49■□□□□ 0.07
COL27A1-204ENST00000477421 ATAD2BQ9ULI0 1458 aa15.47■□□□□ 0.07
COL27A1-204ENST00000477421 VPS8Q8N3P4 1428 aa15.47■□□□□ 0.07
COL27A1-204ENST00000477421 CUX2O14529 1486 aa15.46■□□□□ 0.07
COL27A1-204ENST00000477421 RAPGEF2Q9Y4G8 1499 aa15.46■□□□□ 0.07
COL27A1-204ENST00000477421 CARMIL1Q5VZK9 1371 aa15.43■□□□□ 0.06
COL27A1-204ENST00000477421 SMARCA2P51531 1590 aa15.4■□□□□ 0.06
COL27A1-204ENST00000477421 FKBP8Q14318 412 aa15.39■□□□□ 0.05
COL27A1-204ENST00000477421 CDK11AQ9UQ88 783 aaPredicted RBP15.38■□□□□ 0.05
COL27A1-204ENST00000477421 CCNB3Q8WWL7 1395 aa15.38■□□□□ 0.05
COL27A1-204ENST00000477421 HNRNPUQ00839 825 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL27A1-204ENST00000477421 SLC4A1APQ9BWU0 796 aaKnown RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms