RNA–Protein interactions for RNA: ENST00000477237.1

XRN1-211, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 686 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-211ENST00000477237 AEBP2Q6ZN18 517 aaPredicted RBP25.56■■□□□ 1.68
XRN1-211ENST00000477237 CHIC1Q5VXU3 224 aa23.84■■□□□ 1.41
XRN1-211ENST00000477237 SENP3Q9H4L4 574 aaPredicted RBP21.78■■□□□ 1.08
XRN1-211ENST00000477237 PHF23Q9BUL5 403 aaPredicted RBP21.49■■□□□ 1.03
XRN1-211ENST00000477237 FOXD1Q16676 465 aa20.41■□□□□ 0.86
XRN1-211ENST00000477237 POTEDQ86YR6 584 aa19.45■□□□□ 0.7
XRN1-211ENST00000477237 MSH5O43196 834 aa19.18■□□□□ 0.66
XRN1-211ENST00000477237 PIAS4Q8N2W9 510 aaPredicted RBP18.94■□□□□ 0.62
XRN1-211ENST00000477237 PLPPR3Q6T4P5 718 aa18.84■□□□□ 0.61
XRN1-211ENST00000477237 PPP6R1Q9UPN7 881 aa18.81■□□□□ 0.6
XRN1-211ENST00000477237 ADRA2BP18089 450 aa18.71■□□□□ 0.59
XRN1-211ENST00000477237 MAPK8IP2Q13387 824 aaPredicted RBP17.33■□□□□ 0.36
XRN1-211ENST00000477237 DMRT2Q9Y5R5 561 aa17.24■□□□□ 0.35
XRN1-211ENST00000477237 SCAF1Q9H7N4 1312 aaKnown RBP17.03■□□□□ 0.32
XRN1-211ENST00000477237 CACNB1Q02641 598 aaPredicted RBP16.73■□□□□ 0.27
XRN1-211ENST00000477237 DCAF8L1A6NGE4 600 aa16.55■□□□□ 0.24
XRN1-211ENST00000477237 PPP4R3CPQ6ZMV5 832 aa16.49■□□□□ 0.23
XRN1-211ENST00000477237 HOXD11P31277 338 aaPredicted RBP16.44■□□□□ 0.22
XRN1-211ENST00000477237 RNF39Q9H2S5 420 aa16.37■□□□□ 0.21
XRN1-211ENST00000477237 CNKSR2Q8WXI2 1034 aa16.26■□□□□ 0.19
XRN1-211ENST00000477237 RNF216Q9NWF9 866 aaPredicted RBP16.2■□□□□ 0.18
XRN1-211ENST00000477237 C1QBPQ07021 282 aaKnown RBP16.07■□□□□ 0.16
XRN1-211ENST00000477237 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
XRN1-211ENST00000477237 NCBP3Q53F19 620 aaKnown RBP15.69■□□□□ 0.1
XRN1-211ENST00000477237 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.66■□□□□ 0.1
XRN1-211ENST00000477237 NPM3O75607 178 aaKnown RBP15.53■□□□□ 0.08
XRN1-211ENST00000477237 U3KPZ7 1027 aaPredicted RBP15.32■□□□□ 0.04
XRN1-211ENST00000477237 SPINK5Q9NQ38 1064 aaPredicted RBP15.23■□□□□ 0.03
XRN1-211ENST00000477237 DSG3P32926 999 aa15.21■□□□□ 0.03
XRN1-211ENST00000477237 CAPN15O75808 1086 aa15.18■□□□□ 0.02
XRN1-211ENST00000477237 POTEHQ6S545 545 aa15.15■□□□□ 0.02
XRN1-211ENST00000477237 SLC4A2P04920 1241 aa14.95□□□□□ -0.02
XRN1-211ENST00000477237 KCNA4P22459 653 aa14.9□□□□□ -0.02
XRN1-211ENST00000477237 TRHP20396 242 aaPredicted RBP14.86□□□□□ -0.03
XRN1-211ENST00000477237 ABCB7O75027 752 aa14.83□□□□□ -0.04
XRN1-211ENST00000477237 ZNF219Q9P2Y4 722 aaPredicted RBP14.77□□□□□ -0.05
XRN1-211ENST00000477237 APLP2Q06481 763 aa14.75□□□□□ -0.05
XRN1-211ENST00000477237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.66□□□□□ -0.06
XRN1-211ENST00000477237 HNRNPUL2Q1KMD3 747 aaKnown RBP14.66□□□□□ -0.06
XRN1-211ENST00000477237 SAMD1Q6SPF0 538 aaPredicted RBP14.58□□□□□ -0.08
XRN1-211ENST00000477237 RBM42Q9BTD8 480 aaKnown RBP14.46□□□□□ -0.09
XRN1-211ENST00000477237 POLA2Q14181 598 aa14.37□□□□□ -0.11
XRN1-211ENST00000477237 CHRDL2Q6WN34 429 aa14.34□□□□□ -0.11
XRN1-211ENST00000477237 MYCNP04198 464 aaPredicted RBP14.33□□□□□ -0.12
XRN1-211ENST00000477237 ATF5Q9Y2D1 282 aaPredicted RBP14.11□□□□□ -0.15
XRN1-211ENST00000477237 AKT1S1Q96B36 256 aa14.07□□□□□ -0.16
XRN1-211ENST00000477237 SP7Q8TDD2 431 aaPredicted RBP14.01□□□□□ -0.17
XRN1-211ENST00000477237 FOXD4L1Q9NU39 408 aa13.98□□□□□ -0.17
XRN1-211ENST00000477237 ZBTB12Q9Y330 459 aaPredicted RBP13.98□□□□□ -0.17
XRN1-211ENST00000477237 REM2Q8IYK8 340 aaPredicted RBP13.97□□□□□ -0.17
XRN1-211ENST00000477237 SLC4A1APQ9BWU0 796 aaKnown RBP13.95□□□□□ -0.18
XRN1-211ENST00000477237 OSCARQ8IYS5 282 aa13.94□□□□□ -0.18
XRN1-211ENST00000477237 PIP4P2Q8N4L2 257 aa13.94□□□□□ -0.18
XRN1-211ENST00000477237 PITPNM1O00562 1244 aa13.83□□□□□ -0.2
XRN1-211ENST00000477237 HAX1O00165 279 aa13.78□□□□□ -0.2
XRN1-211ENST00000477237 FXR2P51116 673 aaKnown RBP eCLIP13.78□□□□□ -0.2
XRN1-211ENST00000477237 ZBTB22O15209 634 aa13.71□□□□□ -0.21
XRN1-211ENST00000477237 EVX2Q03828 476 aa13.63□□□□□ -0.23
XRN1-211ENST00000477237 ATXN8OSP0DMR3 200 aa13.56□□□□□ -0.24
XRN1-211ENST00000477237 SPDYE2BA6NHP3 402 aa13.55□□□□□ -0.24
XRN1-211ENST00000477237 SPDYE6P0CI01 402 aa13.55□□□□□ -0.24
XRN1-211ENST00000477237 SPDYE2Q495Y8 402 aa13.55□□□□□ -0.24
XRN1-211ENST00000477237 FBLN2P98095 1184 aa13.5□□□□□ -0.25
XRN1-211ENST00000477237 PRKAR2AP13861 404 aaKnown RBP13.45□□□□□ -0.26
XRN1-211ENST00000477237 CLEC11AQ9Y240 323 aa13.43□□□□□ -0.26
XRN1-211ENST00000477237 MKRN4PQ13434 485 aaPredicted RBP13.42□□□□□ -0.26
XRN1-211ENST00000477237 SPDYE1Q8NFV5 336 aaPredicted RBP13.41□□□□□ -0.26
XRN1-211ENST00000477237 C19orf67A6NJJ6 358 aa13.35□□□□□ -0.27
XRN1-211ENST00000477237 ZNF692Q9BU19 519 aaPredicted RBP13.35□□□□□ -0.27
XRN1-211ENST00000477237 SSUH2Q9Y2M2 353 aa13.35□□□□□ -0.27
XRN1-211ENST00000477237 GABBR2O75899 941 aa13.26□□□□□ -0.29
XRN1-211ENST00000477237 CHADLQ6NUI6 762 aa13.25□□□□□ -0.29
XRN1-211ENST00000477237 PABPN1Q86U42 306 aaKnown RBP eCLIP13.15□□□□□ -0.3
XRN1-211ENST00000477237 PRR29P0C7W0 189 aa13.14□□□□□ -0.31
XRN1-211ENST00000477237 LHX8Q68G74 356 aa13.14□□□□□ -0.31
XRN1-211ENST00000477237 POTEIP0CG38 1075 aa13.01□□□□□ -0.33
XRN1-211ENST00000477237 CD44P16070 742 aaKnown RBP13□□□□□ -0.33
XRN1-211ENST00000477237 FARP1Q9Y4F1 1045 aaPredicted RBP12.98□□□□□ -0.33
XRN1-211ENST00000477237 CLCN6P51797 869 aa12.83□□□□□ -0.36
XRN1-211ENST00000477237 DCBLD2Q96PD2 775 aa12.79□□□□□ -0.36
XRN1-211ENST00000477237 ZNF579Q8NAF0 562 aaKnown RBP12.77□□□□□ -0.37
XRN1-211ENST00000477237 CREBZFQ9NS37 354 aa12.76□□□□□ -0.37
XRN1-211ENST00000477237 ZRANB1Q9UGI0 708 aa12.76□□□□□ -0.37
XRN1-211ENST00000477237 CSRNP3Q8WYN3 585 aa12.71□□□□□ -0.37
XRN1-211ENST00000477237 GALR2O43603 387 aaPredicted RBP12.68□□□□□ -0.38
XRN1-211ENST00000477237 STAG3Q9UJ98 1225 aa12.65□□□□□ -0.38
XRN1-211ENST00000477237 PLSCR2Q9NRY7 297 aa12.63□□□□□ -0.39
XRN1-211ENST00000477237 OTUD5Q96G74 571 aa12.59□□□□□ -0.39
XRN1-211ENST00000477237 POTEB2H3BUK9 544 aa12.58□□□□□ -0.4
XRN1-211ENST00000477237 PHF12Q96QT6 1004 aa12.57□□□□□ -0.4
XRN1-211ENST00000477237 SPDYE4A6NLX3 237 aa12.55□□□□□ -0.4
XRN1-211ENST00000477237 PAK3O75914 559 aaPredicted RBP12.52□□□□□ -0.41
XRN1-211ENST00000477237 PELP1Q8IZL8 1130 aaKnown RBP12.5□□□□□ -0.41
XRN1-211ENST00000477237 MNX1P50219 401 aaPredicted RBP12.49□□□□□ -0.41
XRN1-211ENST00000477237 NPM1P06748 294 aaKnown RBP eCLIP12.45□□□□□ -0.42
XRN1-211ENST00000477237 POTEMA6NI47 508 aa12.39□□□□□ -0.43
XRN1-211ENST00000477237 MS4A3Q96HJ5 214 aa12.39□□□□□ -0.43
XRN1-211ENST00000477237 ASTLQ6HA08 431 aaPredicted RBP12.37□□□□□ -0.43
XRN1-211ENST00000477237 POTEGQ6S5H5 508 aa12.35□□□□□ -0.43
XRN1-211ENST00000477237 METRNQ9UJH8 293 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms