RNA–Protein interactions for RNA: ENST00000475344.1

LTN1-204, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 3

Gene LTN1, Length 696 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-204ENST00000475344 AEBP2Q6ZN18 517 aaPredicted RBP28.56■■■□□ 2.16
LTN1-204ENST00000475344 CHIC1Q5VXU3 224 aa27.6■■■□□ 2.01
LTN1-204ENST00000475344 SENP3Q9H4L4 574 aaPredicted RBP24.28■■□□□ 1.48
LTN1-204ENST00000475344 PHF23Q9BUL5 403 aaPredicted RBP24.24■■□□□ 1.47
LTN1-204ENST00000475344 FOXD1Q16676 465 aa22.59■■□□□ 1.21
LTN1-204ENST00000475344 PLPPR3Q6T4P5 718 aa22.31■■□□□ 1.16
LTN1-204ENST00000475344 ADRA2BP18089 450 aa21.52■■□□□ 1.04
LTN1-204ENST00000475344 PPP6R1Q9UPN7 881 aa21.51■■□□□ 1.03
LTN1-204ENST00000475344 PIAS4Q8N2W9 510 aaPredicted RBP21.29■■□□□ 1
LTN1-204ENST00000475344 MSH5O43196 834 aa20.93■□□□□ 0.94
LTN1-204ENST00000475344 SCAF1Q9H7N4 1312 aaKnown RBP19.66■□□□□ 0.74
LTN1-204ENST00000475344 PPP4R3CPQ6ZMV5 832 aa19.64■□□□□ 0.73
LTN1-204ENST00000475344 MAPK8IP2Q13387 824 aaPredicted RBP19.61■□□□□ 0.73
LTN1-204ENST00000475344 POTEDQ86YR6 584 aa19.59■□□□□ 0.73
LTN1-204ENST00000475344 DMRT2Q9Y5R5 561 aa19.32■□□□□ 0.68
LTN1-204ENST00000475344 CNKSR2Q8WXI2 1034 aa19.13■□□□□ 0.65
LTN1-204ENST00000475344 NCBP3Q53F19 620 aaKnown RBP19.04■□□□□ 0.64
LTN1-204ENST00000475344 KCNA4P22459 653 aa18.87■□□□□ 0.61
LTN1-204ENST00000475344 RNF216Q9NWF9 866 aaPredicted RBP18.8■□□□□ 0.6
LTN1-204ENST00000475344 HOXD11P31277 338 aaPredicted RBP18.78■□□□□ 0.6
LTN1-204ENST00000475344 NPM3O75607 178 aaKnown RBP18.75■□□□□ 0.59
LTN1-204ENST00000475344 DCAF8L1A6NGE4 600 aa18.68■□□□□ 0.58
LTN1-204ENST00000475344 DNAJC5BQ9UF47 199 aa18.07■□□□□ 0.48
LTN1-204ENST00000475344 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.01■□□□□ 0.47
LTN1-204ENST00000475344 SLC4A1APQ9BWU0 796 aaKnown RBP17.93■□□□□ 0.46
LTN1-204ENST00000475344 RNF39Q9H2S5 420 aa17.89■□□□□ 0.45
LTN1-204ENST00000475344 SLC4A2P04920 1241 aa17.76■□□□□ 0.43
LTN1-204ENST00000475344 CACNB1Q02641 598 aaPredicted RBP17.73■□□□□ 0.43
LTN1-204ENST00000475344 C1QBPQ07021 282 aaKnown RBP17.65■□□□□ 0.42
LTN1-204ENST00000475344 U3KPZ7 1027 aaPredicted RBP17.63■□□□□ 0.41
LTN1-204ENST00000475344 FOXD4L1Q9NU39 408 aa17.43■□□□□ 0.38
LTN1-204ENST00000475344 MYCNP04198 464 aaPredicted RBP17.34■□□□□ 0.37
LTN1-204ENST00000475344 ZBTB22O15209 634 aa17.33■□□□□ 0.36
LTN1-204ENST00000475344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.3■□□□□ 0.36
LTN1-204ENST00000475344 HNRNPUL2Q1KMD3 747 aaKnown RBP17.3■□□□□ 0.36
LTN1-204ENST00000475344 SPINK5Q9NQ38 1064 aaPredicted RBP17.27■□□□□ 0.36
LTN1-204ENST00000475344 CAPN15O75808 1086 aa17.26■□□□□ 0.35
LTN1-204ENST00000475344 SAMD1Q6SPF0 538 aaPredicted RBP17.23■□□□□ 0.35
LTN1-204ENST00000475344 APLP2Q06481 763 aa17.2■□□□□ 0.34
LTN1-204ENST00000475344 EHMT2Q96KQ7 1210 aa17.17■□□□□ 0.34
LTN1-204ENST00000475344 TRHP20396 242 aaPredicted RBP17.12■□□□□ 0.33
LTN1-204ENST00000475344 ZNF219Q9P2Y4 722 aaPredicted RBP17.02■□□□□ 0.32
LTN1-204ENST00000475344 CSRNP3Q8WYN3 585 aa17■□□□□ 0.31
LTN1-204ENST00000475344 DSG3P32926 999 aa16.94■□□□□ 0.3
LTN1-204ENST00000475344 ABCB7O75027 752 aa16.92■□□□□ 0.3
LTN1-204ENST00000475344 ATF5Q9Y2D1 282 aaPredicted RBP16.92■□□□□ 0.3
LTN1-204ENST00000475344 ATXN8OSP0DMR3 200 aa16.78■□□□□ 0.28
LTN1-204ENST00000475344 POLA2Q14181 598 aa16.72■□□□□ 0.27
LTN1-204ENST00000475344 ZBTB12Q9Y330 459 aaPredicted RBP16.37■□□□□ 0.21
LTN1-204ENST00000475344 FBLN2P98095 1184 aa16.24■□□□□ 0.19
LTN1-204ENST00000475344 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
LTN1-204ENST00000475344 RBM42Q9BTD8 480 aaKnown RBP16.16■□□□□ 0.18
LTN1-204ENST00000475344 MKRN4PQ13434 485 aaPredicted RBP16.13■□□□□ 0.17
LTN1-204ENST00000475344 SPDYE2BA6NHP3 402 aa15.9■□□□□ 0.14
LTN1-204ENST00000475344 SPDYE6P0CI01 402 aa15.9■□□□□ 0.14
LTN1-204ENST00000475344 SPDYE2Q495Y8 402 aa15.9■□□□□ 0.14
LTN1-204ENST00000475344 AKT1S1Q96B36 256 aa15.88■□□□□ 0.13
LTN1-204ENST00000475344 ZNF692Q9BU19 519 aaPredicted RBP15.86■□□□□ 0.13
LTN1-204ENST00000475344 REM2Q8IYK8 340 aaPredicted RBP15.75■□□□□ 0.11
LTN1-204ENST00000475344 SSUH2Q9Y2M2 353 aa15.72■□□□□ 0.11
LTN1-204ENST00000475344 SPDYE4A6NLX3 237 aa15.68■□□□□ 0.1
LTN1-204ENST00000475344 PABPN1Q86U42 306 aaKnown RBP eCLIP15.64■□□□□ 0.09
LTN1-204ENST00000475344 CHRDL2Q6WN34 429 aa15.62■□□□□ 0.09
LTN1-204ENST00000475344 PITPNM1O00562 1244 aa15.6■□□□□ 0.09
LTN1-204ENST00000475344 CLEC11AQ9Y240 323 aa15.58■□□□□ 0.08
LTN1-204ENST00000475344 SPDYE1Q8NFV5 336 aaPredicted RBP15.53■□□□□ 0.08
LTN1-204ENST00000475344 POTEHQ6S545 545 aa15.47■□□□□ 0.07
LTN1-204ENST00000475344 FKBP8Q14318 412 aa15.45■□□□□ 0.06
LTN1-204ENST00000475344 PIP4P2Q8N4L2 257 aa15.36■□□□□ 0.05
LTN1-204ENST00000475344 PRR29P0C7W0 189 aa15.34■□□□□ 0.05
LTN1-204ENST00000475344 FXR2P51116 673 aaKnown RBP eCLIP15.31■□□□□ 0.04
LTN1-204ENST00000475344 STAG3Q9UJ98 1225 aa15.27■□□□□ 0.04
LTN1-204ENST00000475344 PROM2Q8N271 834 aa15.25■□□□□ 0.03
LTN1-204ENST00000475344 PRKAR2AP13861 404 aaKnown RBP15.23■□□□□ 0.03
LTN1-204ENST00000475344 CHADLQ6NUI6 762 aa15.2■□□□□ 0.02
LTN1-204ENST00000475344 CREBZFQ9NS37 354 aa15.02■□□□□ -0
LTN1-204ENST00000475344 HAX1O00165 279 aa15.01□□□□□ -0.01
LTN1-204ENST00000475344 FARP1Q9Y4F1 1045 aaPredicted RBP14.96□□□□□ -0.01
LTN1-204ENST00000475344 MIER1Q8N108 512 aa14.94□□□□□ -0.02
LTN1-204ENST00000475344 FBXO3Q9UK99 471 aa14.93□□□□□ -0.02
LTN1-204ENST00000475344 PLCD3Q8N3E9 789 aa14.9□□□□□ -0.02
LTN1-204ENST00000475344 PLEKHG5O94827 1062 aa14.89□□□□□ -0.03
LTN1-204ENST00000475344 EVX2Q03828 476 aa14.81□□□□□ -0.04
LTN1-204ENST00000475344 C19orf67A6NJJ6 358 aa14.8□□□□□ -0.04
LTN1-204ENST00000475344 MNX1P50219 401 aaPredicted RBP14.8□□□□□ -0.04
LTN1-204ENST00000475344 NPM1P06748 294 aaKnown RBP eCLIP14.79□□□□□ -0.04
LTN1-204ENST00000475344 CD44P16070 742 aaKnown RBP14.78□□□□□ -0.04
LTN1-204ENST00000475344 VASPP50552 380 aaPredicted RBP14.74□□□□□ -0.05
LTN1-204ENST00000475344 SP7Q8TDD2 431 aaPredicted RBP14.73□□□□□ -0.05
LTN1-204ENST00000475344 ZBTB47Q9UFB7 747 aaPredicted RBP14.68□□□□□ -0.06
LTN1-204ENST00000475344 ZRANB1Q9UGI0 708 aa14.67□□□□□ -0.06
LTN1-204ENST00000475344 PAK3O75914 559 aaPredicted RBP14.66□□□□□ -0.06
LTN1-204ENST00000475344 KLHL34Q8N239 644 aa14.65□□□□□ -0.06
LTN1-204ENST00000475344 TSPYL2Q9H2G4 693 aaPredicted RBP14.61□□□□□ -0.07
LTN1-204ENST00000475344 RASEFQ8IZ41 740 aa14.54□□□□□ -0.08
LTN1-204ENST00000475344 IFNLR1Q8IU57 520 aaPredicted RBP14.52□□□□□ -0.09
LTN1-204ENST00000475344 ZNF579Q8NAF0 562 aaKnown RBP14.51□□□□□ -0.09
LTN1-204ENST00000475344 GABBR2O75899 941 aa14.5□□□□□ -0.09
LTN1-204ENST00000475344 NUBP1P53384 320 aa14.5□□□□□ -0.09
LTN1-204ENST00000475344 PHF12Q96QT6 1004 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms