RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 AEBP2Q6ZN18 517 aaPredicted RBP22.8■■□□□ 1.24
ATPAF1-204ENST00000474020 CHIC1Q5VXU3 224 aa21.99■■□□□ 1.11
ATPAF1-204ENST00000474020 SENP3Q9H4L4 574 aaPredicted RBP19.43■□□□□ 0.7
ATPAF1-204ENST00000474020 PHF23Q9BUL5 403 aaPredicted RBP19.29■□□□□ 0.68
ATPAF1-204ENST00000474020 FOXD1Q16676 465 aa18.05■□□□□ 0.48
ATPAF1-204ENST00000474020 POTEDQ86YR6 584 aa17.98■□□□□ 0.47
ATPAF1-204ENST00000474020 PLPPR3Q6T4P5 718 aa17.72■□□□□ 0.43
ATPAF1-204ENST00000474020 PPP6R1Q9UPN7 881 aa17.11■□□□□ 0.33
ATPAF1-204ENST00000474020 ADRA2BP18089 450 aa17.07■□□□□ 0.32
ATPAF1-204ENST00000474020 MSH5O43196 834 aa16.96■□□□□ 0.31
ATPAF1-204ENST00000474020 PIAS4Q8N2W9 510 aaPredicted RBP16.95■□□□□ 0.3
ATPAF1-204ENST00000474020 SCAF1Q9H7N4 1312 aaKnown RBP15.68■□□□□ 0.1
ATPAF1-204ENST00000474020 MAPK8IP2Q13387 824 aaPredicted RBP15.57■□□□□ 0.08
ATPAF1-204ENST00000474020 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
ATPAF1-204ENST00000474020 DMRT2Q9Y5R5 561 aa15.46■□□□□ 0.07
ATPAF1-204ENST00000474020 CNKSR2Q8WXI2 1034 aa15.21■□□□□ 0.03
ATPAF1-204ENST00000474020 NCBP3Q53F19 620 aaKnown RBP15.08■□□□□ 0
ATPAF1-204ENST00000474020 CACNB1Q02641 598 aaPredicted RBP15.06■□□□□ 0
ATPAF1-204ENST00000474020 HOXD11P31277 338 aaPredicted RBP15.02■□□□□ -0
ATPAF1-204ENST00000474020 RNF216Q9NWF9 866 aaPredicted RBP14.99□□□□□ -0.01
ATPAF1-204ENST00000474020 NPM3O75607 178 aaKnown RBP14.84□□□□□ -0.03
ATPAF1-204ENST00000474020 KCNA4P22459 653 aa14.84□□□□□ -0.03
ATPAF1-204ENST00000474020 DCAF8L1A6NGE4 600 aa14.77□□□□□ -0.05
ATPAF1-204ENST00000474020 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
ATPAF1-204ENST00000474020 RNF39Q9H2S5 420 aa14.35□□□□□ -0.11
ATPAF1-204ENST00000474020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.29□□□□□ -0.12
ATPAF1-204ENST00000474020 C1QBPQ07021 282 aaKnown RBP14.19□□□□□ -0.14
ATPAF1-204ENST00000474020 SLC4A2P04920 1241 aa14.09□□□□□ -0.15
ATPAF1-204ENST00000474020 SLC4A1APQ9BWU0 796 aaKnown RBP14.08□□□□□ -0.16
ATPAF1-204ENST00000474020 U3KPZ7 1027 aaPredicted RBP14.03□□□□□ -0.16
ATPAF1-204ENST00000474020 POTEHQ6S545 545 aa13.93□□□□□ -0.18
ATPAF1-204ENST00000474020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.78□□□□□ -0.2
ATPAF1-204ENST00000474020 HNRNPUL2Q1KMD3 747 aaKnown RBP13.78□□□□□ -0.2
ATPAF1-204ENST00000474020 FOXD4L1Q9NU39 408 aa13.76□□□□□ -0.21
ATPAF1-204ENST00000474020 MYCNP04198 464 aaPredicted RBP13.75□□□□□ -0.21
ATPAF1-204ENST00000474020 APLP2Q06481 763 aa13.75□□□□□ -0.21
ATPAF1-204ENST00000474020 SPINK5Q9NQ38 1064 aaPredicted RBP13.72□□□□□ -0.21
ATPAF1-204ENST00000474020 SAMD1Q6SPF0 538 aaPredicted RBP13.7□□□□□ -0.22
ATPAF1-204ENST00000474020 CAPN15O75808 1086 aa13.68□□□□□ -0.22
ATPAF1-204ENST00000474020 ZBTB22O15209 634 aa13.64□□□□□ -0.23
ATPAF1-204ENST00000474020 ZNF219Q9P2Y4 722 aaPredicted RBP13.56□□□□□ -0.24
ATPAF1-204ENST00000474020 TRHP20396 242 aaPredicted RBP13.54□□□□□ -0.24
ATPAF1-204ENST00000474020 DSG3P32926 999 aa13.54□□□□□ -0.24
ATPAF1-204ENST00000474020 ABCB7O75027 752 aa13.39□□□□□ -0.27
ATPAF1-204ENST00000474020 ATF5Q9Y2D1 282 aaPredicted RBP13.36□□□□□ -0.27
ATPAF1-204ENST00000474020 ATXN8OSP0DMR3 200 aa13.33□□□□□ -0.28
ATPAF1-204ENST00000474020 CSRNP3Q8WYN3 585 aa13.31□□□□□ -0.28
ATPAF1-204ENST00000474020 EHMT2Q96KQ7 1210 aa13.28□□□□□ -0.28
ATPAF1-204ENST00000474020 POLA2Q14181 598 aa13.25□□□□□ -0.29
ATPAF1-204ENST00000474020 ZBTB12Q9Y330 459 aaPredicted RBP13.06□□□□□ -0.32
ATPAF1-204ENST00000474020 RBM42Q9BTD8 480 aaKnown RBP12.97□□□□□ -0.33
ATPAF1-204ENST00000474020 FBLN2P98095 1184 aa12.85□□□□□ -0.35
ATPAF1-204ENST00000474020 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
ATPAF1-204ENST00000474020 MKRN4PQ13434 485 aaPredicted RBP12.78□□□□□ -0.36
ATPAF1-204ENST00000474020 AKT1S1Q96B36 256 aa12.7□□□□□ -0.38
ATPAF1-204ENST00000474020 SPDYE2BA6NHP3 402 aa12.67□□□□□ -0.38
ATPAF1-204ENST00000474020 SPDYE6P0CI01 402 aa12.67□□□□□ -0.38
ATPAF1-204ENST00000474020 SPDYE2Q495Y8 402 aa12.67□□□□□ -0.38
ATPAF1-204ENST00000474020 SP7Q8TDD2 431 aaPredicted RBP12.65□□□□□ -0.38
ATPAF1-204ENST00000474020 CHRDL2Q6WN34 429 aa12.64□□□□□ -0.39
ATPAF1-204ENST00000474020 REM2Q8IYK8 340 aaPredicted RBP12.56□□□□□ -0.4
ATPAF1-204ENST00000474020 ZNF692Q9BU19 519 aaPredicted RBP12.54□□□□□ -0.4
ATPAF1-204ENST00000474020 SSUH2Q9Y2M2 353 aa12.53□□□□□ -0.4
ATPAF1-204ENST00000474020 PITPNM1O00562 1244 aa12.42□□□□□ -0.42
ATPAF1-204ENST00000474020 PABPN1Q86U42 306 aaKnown RBP eCLIP12.36□□□□□ -0.43
ATPAF1-204ENST00000474020 SPDYE1Q8NFV5 336 aaPredicted RBP12.36□□□□□ -0.43
ATPAF1-204ENST00000474020 SPDYE4A6NLX3 237 aa12.34□□□□□ -0.43
ATPAF1-204ENST00000474020 NISCHQ9Y2I1 1504 aa12.29□□□□□ -0.44
ATPAF1-204ENST00000474020 CLEC11AQ9Y240 323 aa12.29□□□□□ -0.44
ATPAF1-204ENST00000474020 PIP4P2Q8N4L2 257 aa12.27□□□□□ -0.45
ATPAF1-204ENST00000474020 FXR2P51116 673 aaKnown RBP eCLIP12.26□□□□□ -0.45
ATPAF1-204ENST00000474020 HAX1O00165 279 aa12.18□□□□□ -0.46
ATPAF1-204ENST00000474020 PRR29P0C7W0 189 aa12.15□□□□□ -0.46
ATPAF1-204ENST00000474020 PROM2Q8N271 834 aa12.12□□□□□ -0.47
ATPAF1-204ENST00000474020 STAG3Q9UJ98 1225 aa12.12□□□□□ -0.47
ATPAF1-204ENST00000474020 PRKAR2AP13861 404 aaKnown RBP12.1□□□□□ -0.47
ATPAF1-204ENST00000474020 FKBP8Q14318 412 aa12.04□□□□□ -0.48
ATPAF1-204ENST00000474020 CHADLQ6NUI6 762 aa12.02□□□□□ -0.49
ATPAF1-204ENST00000474020 CREBZFQ9NS37 354 aa11.92□□□□□ -0.5
ATPAF1-204ENST00000474020 EVX2Q03828 476 aa11.9□□□□□ -0.5
ATPAF1-204ENST00000474020 FARP1Q9Y4F1 1045 aaPredicted RBP11.89□□□□□ -0.51
ATPAF1-204ENST00000474020 LHX8Q68G74 356 aa11.87□□□□□ -0.51
ATPAF1-204ENST00000474020 C19orf67A6NJJ6 358 aa11.85□□□□□ -0.51
ATPAF1-204ENST00000474020 PLSCR2Q9NRY7 297 aa11.81□□□□□ -0.52
ATPAF1-204ENST00000474020 MNX1P50219 401 aaPredicted RBP11.77□□□□□ -0.53
ATPAF1-204ENST00000474020 CD44P16070 742 aaKnown RBP11.74□□□□□ -0.53
ATPAF1-204ENST00000474020 PLEKHG5O94827 1062 aa11.73□□□□□ -0.53
ATPAF1-204ENST00000474020 NPM1P06748 294 aaKnown RBP eCLIP11.73□□□□□ -0.53
ATPAF1-204ENST00000474020 MIER1Q8N108 512 aa11.73□□□□□ -0.53
ATPAF1-204ENST00000474020 FBXO3Q9UK99 471 aa11.73□□□□□ -0.53
ATPAF1-204ENST00000474020 PLCD3Q8N3E9 789 aa11.68□□□□□ -0.54
ATPAF1-204ENST00000474020 GABBR2O75899 941 aa11.63□□□□□ -0.55
ATPAF1-204ENST00000474020 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
ATPAF1-204ENST00000474020 CLCN6P51797 869 aa11.63□□□□□ -0.55
ATPAF1-204ENST00000474020 ZRANB1Q9UGI0 708 aa11.62□□□□□ -0.55
ATPAF1-204ENST00000474020 ZBTB47Q9UFB7 747 aaPredicted RBP11.6□□□□□ -0.55
ATPAF1-204ENST00000474020 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
ATPAF1-204ENST00000474020 VASPP50552 380 aaPredicted RBP11.57□□□□□ -0.56
ATPAF1-204ENST00000474020 TSPYL2Q9H2G4 693 aaPredicted RBP11.5□□□□□ -0.57
ATPAF1-204ENST00000474020 RASEFQ8IZ41 740 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms