RNA–Protein interactions for RNA: ENST00000473470.1

CNOT4-209, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 2

Gene CNOT4, Length 707 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-209ENST00000473470 AEBP2Q6ZN18 517 aaPredicted RBP24.96■■□□□ 1.59
CNOT4-209ENST00000473470 CHIC1Q5VXU3 224 aa24.44■■□□□ 1.5
CNOT4-209ENST00000473470 SENP3Q9H4L4 574 aaPredicted RBP21.4■■□□□ 1.02
CNOT4-209ENST00000473470 PHF23Q9BUL5 403 aaPredicted RBP21.34■■□□□ 1.01
CNOT4-209ENST00000473470 PLPPR3Q6T4P5 718 aa19.88■□□□□ 0.77
CNOT4-209ENST00000473470 FOXD1Q16676 465 aa19.71■□□□□ 0.75
CNOT4-209ENST00000473470 ADRA2BP18089 450 aa18.82■□□□□ 0.6
CNOT4-209ENST00000473470 PPP6R1Q9UPN7 881 aa18.81■□□□□ 0.6
CNOT4-209ENST00000473470 PIAS4Q8N2W9 510 aaPredicted RBP18.67■□□□□ 0.58
CNOT4-209ENST00000473470 MSH5O43196 834 aa18.39■□□□□ 0.53
CNOT4-209ENST00000473470 SCAF1Q9H7N4 1312 aaKnown RBP17.46■□□□□ 0.38
CNOT4-209ENST00000473470 PPP4R3CPQ6ZMV5 832 aa17.42■□□□□ 0.38
CNOT4-209ENST00000473470 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
CNOT4-209ENST00000473470 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
CNOT4-209ENST00000473470 CNKSR2Q8WXI2 1034 aa17.02■□□□□ 0.32
CNOT4-209ENST00000473470 DMRT2Q9Y5R5 561 aa17.02■□□□□ 0.32
CNOT4-209ENST00000473470 KCNA4P22459 653 aa16.88■□□□□ 0.29
CNOT4-209ENST00000473470 POTEDQ86YR6 584 aa16.72■□□□□ 0.27
CNOT4-209ENST00000473470 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
CNOT4-209ENST00000473470 NPM3O75607 178 aaKnown RBP16.68■□□□□ 0.26
CNOT4-209ENST00000473470 HOXD11P31277 338 aaPredicted RBP16.64■□□□□ 0.25
CNOT4-209ENST00000473470 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
CNOT4-209ENST00000473470 DCAF8L1A6NGE4 600 aa16.24■□□□□ 0.19
CNOT4-209ENST00000473470 SLC4A1APQ9BWU0 796 aaKnown RBP16.15■□□□□ 0.18
CNOT4-209ENST00000473470 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.85■□□□□ 0.13
CNOT4-209ENST00000473470 SLC4A2P04920 1241 aa15.72■□□□□ 0.11
CNOT4-209ENST00000473470 FOXD4L1Q9NU39 408 aa15.69■□□□□ 0.1
CNOT4-209ENST00000473470 RNF39Q9H2S5 420 aa15.66■□□□□ 0.1
CNOT4-209ENST00000473470 U3KPZ7 1027 aaPredicted RBP15.55■□□□□ 0.08
CNOT4-209ENST00000473470 MYCNP04198 464 aaPredicted RBP15.54■□□□□ 0.08
CNOT4-209ENST00000473470 C1QBPQ07021 282 aaKnown RBP15.53■□□□□ 0.08
CNOT4-209ENST00000473470 EHMT2Q96KQ7 1210 aa15.53■□□□□ 0.08
CNOT4-209ENST00000473470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.51■□□□□ 0.07
CNOT4-209ENST00000473470 HNRNPUL2Q1KMD3 747 aaKnown RBP15.51■□□□□ 0.07
CNOT4-209ENST00000473470 ZBTB22O15209 634 aa15.49■□□□□ 0.07
CNOT4-209ENST00000473470 APLP2Q06481 763 aa15.43■□□□□ 0.06
CNOT4-209ENST00000473470 SAMD1Q6SPF0 538 aaPredicted RBP15.41■□□□□ 0.06
CNOT4-209ENST00000473470 CSRNP3Q8WYN3 585 aa15.35■□□□□ 0.05
CNOT4-209ENST00000473470 CACNB1Q02641 598 aaPredicted RBP15.3■□□□□ 0.04
CNOT4-209ENST00000473470 ATXN8OSP0DMR3 200 aa15.18■□□□□ 0.02
CNOT4-209ENST00000473470 ZNF219Q9P2Y4 722 aaPredicted RBP15.13■□□□□ 0.01
CNOT4-209ENST00000473470 CAPN15O75808 1086 aa15.1■□□□□ 0.01
CNOT4-209ENST00000473470 SPINK5Q9NQ38 1064 aaPredicted RBP15.07■□□□□ 0
CNOT4-209ENST00000473470 TRHP20396 242 aaPredicted RBP14.98□□□□□ -0.01
CNOT4-209ENST00000473470 ATF5Q9Y2D1 282 aaPredicted RBP14.9□□□□□ -0.02
CNOT4-209ENST00000473470 DSG3P32926 999 aa14.84□□□□□ -0.03
CNOT4-209ENST00000473470 ABCB7O75027 752 aa14.76□□□□□ -0.05
CNOT4-209ENST00000473470 POLA2Q14181 598 aa14.71□□□□□ -0.05
CNOT4-209ENST00000473470 ZBTB12Q9Y330 459 aaPredicted RBP14.69□□□□□ -0.06
CNOT4-209ENST00000473470 FBLN2P98095 1184 aa14.52□□□□□ -0.09
CNOT4-209ENST00000473470 RBM42Q9BTD8 480 aaKnown RBP14.33□□□□□ -0.12
CNOT4-209ENST00000473470 MKRN4PQ13434 485 aaPredicted RBP14.3□□□□□ -0.12
CNOT4-209ENST00000473470 OSCARQ8IYS5 282 aa14.26□□□□□ -0.13
CNOT4-209ENST00000473470 SPDYE2BA6NHP3 402 aa14.2□□□□□ -0.14
CNOT4-209ENST00000473470 SPDYE6P0CI01 402 aa14.2□□□□□ -0.14
CNOT4-209ENST00000473470 SPDYE2Q495Y8 402 aa14.2□□□□□ -0.14
CNOT4-209ENST00000473470 SPDYE4A6NLX3 237 aa14.04□□□□□ -0.16
CNOT4-209ENST00000473470 AKT1S1Q96B36 256 aa14.04□□□□□ -0.16
CNOT4-209ENST00000473470 ZNF692Q9BU19 519 aaPredicted RBP14.04□□□□□ -0.16
CNOT4-209ENST00000473470 SSUH2Q9Y2M2 353 aa14.04□□□□□ -0.16
CNOT4-209ENST00000473470 FKBP8Q14318 412 aa13.95□□□□□ -0.18
CNOT4-209ENST00000473470 PABPN1Q86U42 306 aaKnown RBP eCLIP13.85□□□□□ -0.19
CNOT4-209ENST00000473470 REM2Q8IYK8 340 aaPredicted RBP13.82□□□□□ -0.2
CNOT4-209ENST00000473470 PROM2Q8N271 834 aa13.81□□□□□ -0.2
CNOT4-209ENST00000473470 SPDYE1Q8NFV5 336 aaPredicted RBP13.8□□□□□ -0.2
CNOT4-209ENST00000473470 STAG3Q9UJ98 1225 aa13.72□□□□□ -0.21
CNOT4-209ENST00000473470 PITPNM1O00562 1244 aa13.68□□□□□ -0.22
CNOT4-209ENST00000473470 CLEC11AQ9Y240 323 aa13.64□□□□□ -0.23
CNOT4-209ENST00000473470 CHRDL2Q6WN34 429 aa13.63□□□□□ -0.23
CNOT4-209ENST00000473470 FBXO3Q9UK99 471 aa13.61□□□□□ -0.23
CNOT4-209ENST00000473470 PRR29P0C7W0 189 aa13.54□□□□□ -0.24
CNOT4-209ENST00000473470 FXR2P51116 673 aaKnown RBP eCLIP13.44□□□□□ -0.26
CNOT4-209ENST00000473470 PLEKHG5O94827 1062 aa13.42□□□□□ -0.26
CNOT4-209ENST00000473470 PIP4P2Q8N4L2 257 aa13.4□□□□□ -0.26
CNOT4-209ENST00000473470 PRKAR2AP13861 404 aaKnown RBP13.35□□□□□ -0.27
CNOT4-209ENST00000473470 VASPP50552 380 aaPredicted RBP13.35□□□□□ -0.27
CNOT4-209ENST00000473470 PLCD3Q8N3E9 789 aa13.33□□□□□ -0.28
CNOT4-209ENST00000473470 ZBTB47Q9UFB7 747 aaPredicted RBP13.31□□□□□ -0.28
CNOT4-209ENST00000473470 CREBZFQ9NS37 354 aa13.29□□□□□ -0.28
CNOT4-209ENST00000473470 MIER1Q8N108 512 aa13.28□□□□□ -0.28
CNOT4-209ENST00000473470 POTEHQ6S545 545 aa13.27□□□□□ -0.29
CNOT4-209ENST00000473470 CHADLQ6NUI6 762 aa13.24□□□□□ -0.29
CNOT4-209ENST00000473470 NPM1P06748 294 aaKnown RBP eCLIP13.2□□□□□ -0.3
CNOT4-209ENST00000473470 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
CNOT4-209ENST00000473470 MNX1P50219 401 aaPredicted RBP13.13□□□□□ -0.31
CNOT4-209ENST00000473470 KLHL34Q8N239 644 aa13.11□□□□□ -0.31
CNOT4-209ENST00000473470 IFNLR1Q8IU57 520 aaPredicted RBP13.06□□□□□ -0.32
CNOT4-209ENST00000473470 PAK3O75914 559 aaPredicted RBP13.05□□□□□ -0.32
CNOT4-209ENST00000473470 SPOCK2Q92563 424 aa13.03□□□□□ -0.32
CNOT4-209ENST00000473470 C19orf67A6NJJ6 358 aa12.99□□□□□ -0.33
CNOT4-209ENST00000473470 HAX1O00165 279 aa12.99□□□□□ -0.33
CNOT4-209ENST00000473470 CD44P16070 742 aaKnown RBP12.99□□□□□ -0.33
CNOT4-209ENST00000473470 FAM212AQ96EL1 285 aa12.98□□□□□ -0.33
CNOT4-209ENST00000473470 NUBP1P53384 320 aa12.95□□□□□ -0.34
CNOT4-209ENST00000473470 GSE1Q14687 1217 aa12.9□□□□□ -0.34
CNOT4-209ENST00000473470 RASEFQ8IZ41 740 aa12.9□□□□□ -0.34
CNOT4-209ENST00000473470 ZRANB1Q9UGI0 708 aa12.87□□□□□ -0.35
CNOT4-209ENST00000473470 ZNF579Q8NAF0 562 aaKnown RBP12.86□□□□□ -0.35
CNOT4-209ENST00000473470 TSPYL2Q9H2G4 693 aaPredicted RBP12.85□□□□□ -0.35
CNOT4-209ENST00000473470 CLCN6P51797 869 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms