RNA–Protein interactions for RNA: ENST00000473177.1

LRCH3-214, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 520 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-214ENST00000473177 AEBP2Q6ZN18 517 aaPredicted RBP17.62■□□□□ 0.41
LRCH3-214ENST00000473177 CHIC1Q5VXU3 224 aa16.83■□□□□ 0.28
LRCH3-214ENST00000473177 SENP3Q9H4L4 574 aaPredicted RBP15.15■□□□□ 0.02
LRCH3-214ENST00000473177 PHF23Q9BUL5 403 aaPredicted RBP14.88□□□□□ -0.03
LRCH3-214ENST00000473177 FOXD1Q16676 465 aa14.05□□□□□ -0.16
LRCH3-214ENST00000473177 PLPPR3Q6T4P5 718 aa13.74□□□□□ -0.21
LRCH3-214ENST00000473177 MSH5O43196 834 aa13.27□□□□□ -0.29
LRCH3-214ENST00000473177 PIAS4Q8N2W9 510 aaPredicted RBP13.17□□□□□ -0.3
LRCH3-214ENST00000473177 PPP6R1Q9UPN7 881 aa13.04□□□□□ -0.32
LRCH3-214ENST00000473177 ADRA2BP18089 450 aa13.02□□□□□ -0.33
LRCH3-214ENST00000473177 POTEDQ86YR6 584 aa12.99□□□□□ -0.33
LRCH3-214ENST00000473177 PPP4R3CPQ6ZMV5 832 aa12.12□□□□□ -0.47
LRCH3-214ENST00000473177 KCNA4P22459 653 aa12.04□□□□□ -0.48
LRCH3-214ENST00000473177 SCAF1Q9H7N4 1312 aaKnown RBP12.03□□□□□ -0.48
LRCH3-214ENST00000473177 DMRT2Q9Y5R5 561 aa11.98□□□□□ -0.49
LRCH3-214ENST00000473177 MAPK8IP2Q13387 824 aaPredicted RBP11.95□□□□□ -0.5
LRCH3-214ENST00000473177 NCBP3Q53F19 620 aaKnown RBP11.87□□□□□ -0.51
LRCH3-214ENST00000473177 CNKSR2Q8WXI2 1034 aa11.75□□□□□ -0.53
LRCH3-214ENST00000473177 NPM3O75607 178 aaKnown RBP11.69□□□□□ -0.54
LRCH3-214ENST00000473177 DCAF8L1A6NGE4 600 aa11.51□□□□□ -0.57
LRCH3-214ENST00000473177 HOXD11P31277 338 aaPredicted RBP11.5□□□□□ -0.57
LRCH3-214ENST00000473177 SLC4A1APQ9BWU0 796 aaKnown RBP11.49□□□□□ -0.57
LRCH3-214ENST00000473177 RNF216Q9NWF9 866 aaPredicted RBP11.49□□□□□ -0.57
LRCH3-214ENST00000473177 CACNB1Q02641 598 aaPredicted RBP11.4□□□□□ -0.58
LRCH3-214ENST00000473177 DNAJC5BQ9UF47 199 aa11.4□□□□□ -0.58
LRCH3-214ENST00000473177 EHMT2Q96KQ7 1210 aa11.34□□□□□ -0.59
LRCH3-214ENST00000473177 RNF39Q9H2S5 420 aa11.26□□□□□ -0.61
LRCH3-214ENST00000473177 CSRNP3Q8WYN3 585 aa11.18□□□□□ -0.62
LRCH3-214ENST00000473177 C1QBPQ07021 282 aaKnown RBP11.14□□□□□ -0.63
LRCH3-214ENST00000473177 ZBTB22O15209 634 aa11.08□□□□□ -0.64
LRCH3-214ENST00000473177 FOXD4L1Q9NU39 408 aa11.04□□□□□ -0.64
LRCH3-214ENST00000473177 SLC4A2P04920 1241 aa11□□□□□ -0.65
LRCH3-214ENST00000473177 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11□□□□□ -0.651e-7■■□□□ 14.2
LRCH3-214ENST00000473177 NISCHQ9Y2I1 1504 aa10.89□□□□□ -0.67
LRCH3-214ENST00000473177 MYCNP04198 464 aaPredicted RBP10.8□□□□□ -0.68
LRCH3-214ENST00000473177 U3KPZ7 1027 aaPredicted RBP10.71□□□□□ -0.69
LRCH3-214ENST00000473177 ATXN8OSP0DMR3 200 aa10.66□□□□□ -0.7
LRCH3-214ENST00000473177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.64□□□□□ -0.71
LRCH3-214ENST00000473177 HNRNPUL2Q1KMD3 747 aaKnown RBP10.64□□□□□ -0.71
LRCH3-214ENST00000473177 CAPN15O75808 1086 aa10.6□□□□□ -0.71
LRCH3-214ENST00000473177 SAMD1Q6SPF0 538 aaPredicted RBP10.6□□□□□ -0.71
LRCH3-214ENST00000473177 SPINK5Q9NQ38 1064 aaPredicted RBP10.56□□□□□ -0.72
LRCH3-214ENST00000473177 APLP2Q06481 763 aa10.54□□□□□ -0.72
LRCH3-214ENST00000473177 DSG3P32926 999 aa10.52□□□□□ -0.73
LRCH3-214ENST00000473177 ATF5Q9Y2D1 282 aaPredicted RBP10.47□□□□□ -0.73
LRCH3-214ENST00000473177 ZNF219Q9P2Y4 722 aaPredicted RBP10.43□□□□□ -0.74
LRCH3-214ENST00000473177 TRHP20396 242 aaPredicted RBP10.4□□□□□ -0.74
LRCH3-214ENST00000473177 ABCC9O60706 1549 aa10.39□□□□□ -0.75
LRCH3-214ENST00000473177 ABCB7O75027 752 aa10.32□□□□□ -0.76
LRCH3-214ENST00000473177 POTEHQ6S545 545 aa10.19□□□□□ -0.78
LRCH3-214ENST00000473177 POLA2Q14181 598 aa10.15□□□□□ -0.78
LRCH3-214ENST00000473177 RBM42Q9BTD8 480 aaKnown RBP10.13□□□□□ -0.79
LRCH3-214ENST00000473177 FKBP8Q14318 412 aa10.07□□□□□ -0.8
LRCH3-214ENST00000473177 MKRN4PQ13434 485 aaPredicted RBP10.05□□□□□ -0.8
LRCH3-214ENST00000473177 FBLN2P98095 1184 aa10.03□□□□□ -0.8
LRCH3-214ENST00000473177 ZBTB12Q9Y330 459 aaPredicted RBP10.02□□□□□ -0.81
LRCH3-214ENST00000473177 CCDC180Q9P1Z9 1646 aa9.92□□□□□ -0.82
LRCH3-214ENST00000473177 SPDYE4A6NLX3 237 aa9.9□□□□□ -0.82
LRCH3-214ENST00000473177 CHRDL2Q6WN34 429 aa9.87□□□□□ -0.83
LRCH3-214ENST00000473177 AKT1S1Q96B36 256 aa9.84□□□□□ -0.83
LRCH3-214ENST00000473177 PROM2Q8N271 834 aa9.81□□□□□ -0.84
LRCH3-214ENST00000473177 OSCARQ8IYS5 282 aa9.79□□□□□ -0.84
LRCH3-214ENST00000473177 SPDYE2BA6NHP3 402 aa9.76□□□□□ -0.85
LRCH3-214ENST00000473177 SPDYE6P0CI01 402 aa9.76□□□□□ -0.85
LRCH3-214ENST00000473177 SPDYE2Q495Y8 402 aa9.76□□□□□ -0.85
LRCH3-214ENST00000473177 ZNF692Q9BU19 519 aaPredicted RBP9.73□□□□□ -0.85
LRCH3-214ENST00000473177 SSUH2Q9Y2M2 353 aa9.71□□□□□ -0.86
LRCH3-214ENST00000473177 REM2Q8IYK8 340 aaPredicted RBP9.7□□□□□ -0.86
LRCH3-214ENST00000473177 FBXO3Q9UK99 471 aa9.7□□□□□ -0.86
LRCH3-214ENST00000473177 RB1CC1Q8TDY2 1594 aa9.69□□□□□ -0.86
LRCH3-214ENST00000473177 PITPNM1O00562 1244 aa9.61□□□□□ -0.87
LRCH3-214ENST00000473177 PABPN1Q86U42 306 aaKnown RBP eCLIP9.61□□□□□ -0.87
LRCH3-214ENST00000473177 PIP4P2Q8N4L2 257 aa9.6□□□□□ -0.87
LRCH3-214ENST00000473177 VASPP50552 380 aaPredicted RBP9.55□□□□□ -0.88
LRCH3-214ENST00000473177 FXR2P51116 673 aaKnown RBP eCLIP9.54□□□□□ -0.88
LRCH3-214ENST00000473177 SP7Q8TDD2 431 aaPredicted RBP9.54□□□□□ -0.88
LRCH3-214ENST00000473177 DNAJC5Q9H3Z4 198 aa9.54□□□□□ -0.88
LRCH3-214ENST00000473177 AMER1Q5JTC6 1135 aaPredicted RBP9.52□□□□□ -0.89
LRCH3-214ENST00000473177 STAG3Q9UJ98 1225 aa9.52□□□□□ -0.89
LRCH3-214ENST00000473177 NACADO15069 1562 aa9.5□□□□□ -0.89
LRCH3-214ENST00000473177 RTN4Q9NQC3 1192 aaKnown RBP9.48□□□□□ -0.89
LRCH3-214ENST00000473177 DCAF8L2P0C7V8 631 aa9.47□□□□□ -0.89
LRCH3-214ENST00000473177 SPDYE1Q8NFV5 336 aaPredicted RBP9.47□□□□□ -0.89
LRCH3-214ENST00000473177 HAX1O00165 279 aa9.46□□□□□ -0.9
LRCH3-214ENST00000473177 IFNLR1Q8IU57 520 aaPredicted RBP9.43□□□□□ -0.9
LRCH3-214ENST00000473177 CLEC11AQ9Y240 323 aa9.43□□□□□ -0.9
LRCH3-214ENST00000473177 CECR2Q9BXF3 1484 aa9.4□□□□□ -0.91
LRCH3-214ENST00000473177 PRKAR2AP13861 404 aaKnown RBP9.37□□□□□ -0.91
LRCH3-214ENST00000473177 MIER1Q8N108 512 aa9.36□□□□□ -0.91
LRCH3-214ENST00000473177 PLCD3Q8N3E9 789 aa9.36□□□□□ -0.91
LRCH3-214ENST00000473177 BICRAQ9NZM4 1560 aa9.35□□□□□ -0.91
LRCH3-214ENST00000473177 UNC13AQ9UPW8 1703 aa9.33□□□□□ -0.92
LRCH3-214ENST00000473177 CC2D2AQ9P2K1 1620 aa9.31□□□□□ -0.92
LRCH3-214ENST00000473177 PLEKHG5O94827 1062 aa9.31□□□□□ -0.92
LRCH3-214ENST00000473177 KLHL34Q8N239 644 aa9.31□□□□□ -0.92
LRCH3-214ENST00000473177 PRR29P0C7W0 189 aa9.3□□□□□ -0.92
LRCH3-214ENST00000473177 SPOCK2Q92563 424 aa9.29□□□□□ -0.92
LRCH3-214ENST00000473177 ZBTB47Q9UFB7 747 aaPredicted RBP9.28□□□□□ -0.92
LRCH3-214ENST00000473177 EVX2Q03828 476 aa9.25□□□□□ -0.93
LRCH3-214ENST00000473177 SHROOM4Q9ULL8 1493 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms