RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 AEBP2Q6ZN18 517 aaPredicted RBP31.64■■■□□ 2.66
PRPF40A-206ENST00000471167 CHIC1Q5VXU3 224 aa30.48■■■□□ 2.47
PRPF40A-206ENST00000471167 PHF23Q9BUL5 403 aaPredicted RBP26.93■■□□□ 1.9
PRPF40A-206ENST00000471167 SENP3Q9H4L4 574 aaPredicted RBP26.62■■□□□ 1.85
PRPF40A-206ENST00000471167 FOXD1Q16676 465 aa24.91■■□□□ 1.58
PRPF40A-206ENST00000471167 PLPPR3Q6T4P5 718 aa24.52■■□□□ 1.52
PRPF40A-206ENST00000471167 PPP6R1Q9UPN7 881 aa23.87■■□□□ 1.41
PRPF40A-206ENST00000471167 ADRA2BP18089 450 aa23.75■■□□□ 1.39
PRPF40A-206ENST00000471167 PIAS4Q8N2W9 510 aaPredicted RBP23.29■■□□□ 1.32
PRPF40A-206ENST00000471167 MSH5O43196 834 aa22.86■■□□□ 1.25
PRPF40A-206ENST00000471167 MAPK8IP2Q13387 824 aaPredicted RBP21.68■■□□□ 1.06
PRPF40A-206ENST00000471167 PPP4R3CPQ6ZMV5 832 aa21.66■■□□□ 1.06
PRPF40A-206ENST00000471167 POTEDQ86YR6 584 aa21.46■■□□□ 1.03
PRPF40A-206ENST00000471167 SCAF1Q9H7N4 1312 aaKnown RBP21.44■■□□□ 1.02
PRPF40A-206ENST00000471167 DMRT2Q9Y5R5 561 aa21.3■■□□□ 1
PRPF40A-206ENST00000471167 CNKSR2Q8WXI2 1034 aa21.04■□□□□ 0.96
PRPF40A-206ENST00000471167 KCNA4P22459 653 aa20.93■□□□□ 0.94
PRPF40A-206ENST00000471167 NCBP3Q53F19 620 aaKnown RBP20.83■□□□□ 0.93
PRPF40A-206ENST00000471167 HOXD11P31277 338 aaPredicted RBP20.77■□□□□ 0.92
PRPF40A-206ENST00000471167 NPM3O75607 178 aaKnown RBP20.74■□□□□ 0.91
PRPF40A-206ENST00000471167 RNF216Q9NWF9 866 aaPredicted RBP20.72■□□□□ 0.91
PRPF40A-206ENST00000471167 DCAF8L1A6NGE4 600 aa20.24■□□□□ 0.83
PRPF40A-206ENST00000471167 DNAJC5BQ9UF47 199 aa20.17■□□□□ 0.82
PRPF40A-206ENST00000471167 SLC4A1APQ9BWU0 796 aaKnown RBP19.75■□□□□ 0.75
PRPF40A-206ENST00000471167 SLC4A2P04920 1241 aa19.74■□□□□ 0.75
PRPF40A-206ENST00000471167 RNF39Q9H2S5 420 aa19.71■□□□□ 0.75
PRPF40A-206ENST00000471167 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.65■□□□□ 0.741e-6■■□□□ 14.5
PRPF40A-206ENST00000471167 U3KPZ7 1027 aaPredicted RBP19.48■□□□□ 0.71
PRPF40A-206ENST00000471167 ZBTB22O15209 634 aa19.35■□□□□ 0.69
PRPF40A-206ENST00000471167 C1QBPQ07021 282 aaKnown RBP19.35■□□□□ 0.69
PRPF40A-206ENST00000471167 CACNB1Q02641 598 aaPredicted RBP19.26■□□□□ 0.67
PRPF40A-206ENST00000471167 FOXD4L1Q9NU39 408 aa19.21■□□□□ 0.67
PRPF40A-206ENST00000471167 MYCNP04198 464 aaPredicted RBP19.04■□□□□ 0.64
PRPF40A-206ENST00000471167 SPINK5Q9NQ38 1064 aaPredicted RBP19.03■□□□□ 0.64
PRPF40A-206ENST00000471167 CSRNP3Q8WYN3 585 aa18.96■□□□□ 0.63
PRPF40A-206ENST00000471167 EHMT2Q96KQ7 1210 aa18.91■□□□□ 0.62
PRPF40A-206ENST00000471167 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.86■□□□□ 0.61
PRPF40A-206ENST00000471167 HNRNPUL2Q1KMD3 747 aaKnown RBP18.86■□□□□ 0.61
PRPF40A-206ENST00000471167 SAMD1Q6SPF0 538 aaPredicted RBP18.85■□□□□ 0.61
PRPF40A-206ENST00000471167 ATF5Q9Y2D1 282 aaPredicted RBP18.8■□□□□ 0.6
PRPF40A-206ENST00000471167 CAPN15O75808 1086 aa18.79■□□□□ 0.6
PRPF40A-206ENST00000471167 DSG3P32926 999 aa18.68■□□□□ 0.58
PRPF40A-206ENST00000471167 TRHP20396 242 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-206ENST00000471167 APLP2Q06481 763 aa18.65■□□□□ 0.58
PRPF40A-206ENST00000471167 ZNF219Q9P2Y4 722 aaPredicted RBP18.58■□□□□ 0.56
PRPF40A-206ENST00000471167 ATXN8OSP0DMR3 200 aa18.53■□□□□ 0.56
PRPF40A-206ENST00000471167 ABCB7O75027 752 aa18.5■□□□□ 0.55
PRPF40A-206ENST00000471167 POLA2Q14181 598 aa18.36■□□□□ 0.53
PRPF40A-206ENST00000471167 MKRN4PQ13434 485 aaPredicted RBP17.94■□□□□ 0.46
PRPF40A-206ENST00000471167 ZBTB12Q9Y330 459 aaPredicted RBP17.84■□□□□ 0.45
PRPF40A-206ENST00000471167 OSCARQ8IYS5 282 aa17.76■□□□□ 0.43
PRPF40A-206ENST00000471167 FBLN2P98095 1184 aa17.7■□□□□ 0.42
PRPF40A-206ENST00000471167 RBM42Q9BTD8 480 aaKnown RBP17.59■□□□□ 0.41
PRPF40A-206ENST00000471167 SPDYE2BA6NHP3 402 aa17.45■□□□□ 0.38
PRPF40A-206ENST00000471167 SPDYE6P0CI01 402 aa17.45■□□□□ 0.38
PRPF40A-206ENST00000471167 SPDYE2Q495Y8 402 aa17.45■□□□□ 0.38
PRPF40A-206ENST00000471167 AKT1S1Q96B36 256 aa17.41■□□□□ 0.38
PRPF40A-206ENST00000471167 SSUH2Q9Y2M2 353 aa17.39■□□□□ 0.37
PRPF40A-206ENST00000471167 ZNF692Q9BU19 519 aaPredicted RBP17.35■□□□□ 0.37
PRPF40A-206ENST00000471167 REM2Q8IYK8 340 aaPredicted RBP17.33■□□□□ 0.36
PRPF40A-206ENST00000471167 SPDYE4A6NLX3 237 aa17.23■□□□□ 0.35
PRPF40A-206ENST00000471167 PABPN1Q86U42 306 aaKnown RBP eCLIP17.16■□□□□ 0.34
PRPF40A-206ENST00000471167 PITPNM1O00562 1244 aa17.14■□□□□ 0.33
PRPF40A-206ENST00000471167 CHRDL2Q6WN34 429 aa17.09■□□□□ 0.33
PRPF40A-206ENST00000471167 PROM2Q8N271 834 aa17.04■□□□□ 0.32
PRPF40A-206ENST00000471167 FKBP8Q14318 412 aa17.02■□□□□ 0.32
PRPF40A-206ENST00000471167 SPDYE1Q8NFV5 336 aaPredicted RBP16.97■□□□□ 0.31
PRPF40A-206ENST00000471167 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
PRPF40A-206ENST00000471167 FXR2P51116 673 aaKnown RBP eCLIP16.89■□□□□ 0.29
PRPF40A-206ENST00000471167 PIP4P2Q8N4L2 257 aa16.88■□□□□ 0.29
PRPF40A-206ENST00000471167 POTEHQ6S545 545 aa16.87■□□□□ 0.29
PRPF40A-206ENST00000471167 PRR29P0C7W0 189 aa16.73■□□□□ 0.27
PRPF40A-206ENST00000471167 STAG3Q9UJ98 1225 aa16.67■□□□□ 0.26
PRPF40A-206ENST00000471167 CHADLQ6NUI6 762 aa16.66■□□□□ 0.26
PRPF40A-206ENST00000471167 PRKAR2AP13861 404 aaKnown RBP16.65■□□□□ 0.26
PRPF40A-206ENST00000471167 CREBZFQ9NS37 354 aa16.61■□□□□ 0.25
PRPF40A-206ENST00000471167 MNX1P50219 401 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-206ENST00000471167 FARP1Q9Y4F1 1045 aaPredicted RBP16.43■□□□□ 0.22
PRPF40A-206ENST00000471167 EVX2Q03828 476 aa16.4■□□□□ 0.22
PRPF40A-206ENST00000471167 FBXO3Q9UK99 471 aa16.33■□□□□ 0.2
PRPF40A-206ENST00000471167 MIER1Q8N108 512 aa16.32■□□□□ 0.2
PRPF40A-206ENST00000471167 C19orf67A6NJJ6 358 aa16.31■□□□□ 0.2
PRPF40A-206ENST00000471167 HAX1O00165 279 aa16.3■□□□□ 0.2
PRPF40A-206ENST00000471167 VASPP50552 380 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-206ENST00000471167 PLCD3Q8N3E9 789 aa16.21■□□□□ 0.19
PRPF40A-206ENST00000471167 CD44P16070 742 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-206ENST00000471167 IFNLR1Q8IU57 520 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-206ENST00000471167 NPM1P06748 294 aaKnown RBP eCLIP16.09■□□□□ 0.17
PRPF40A-206ENST00000471167 SP7Q8TDD2 431 aaPredicted RBP16.09■□□□□ 0.17
PRPF40A-206ENST00000471167 NUBP1P53384 320 aa16.08■□□□□ 0.16
PRPF40A-206ENST00000471167 RASEFQ8IZ41 740 aa16.07■□□□□ 0.16
PRPF40A-206ENST00000471167 PLEKHG5O94827 1062 aa16.05■□□□□ 0.16
PRPF40A-206ENST00000471167 ZRANB1Q9UGI0 708 aa16.01■□□□□ 0.15
PRPF40A-206ENST00000471167 ZBTB47Q9UFB7 747 aaPredicted RBP15.96■□□□□ 0.15
PRPF40A-206ENST00000471167 ZNF579Q8NAF0 562 aaKnown RBP15.95■□□□□ 0.14
PRPF40A-206ENST00000471167 TSPYL2Q9H2G4 693 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-206ENST00000471167 KLHL34Q8N239 644 aa15.93■□□□□ 0.14
PRPF40A-206ENST00000471167 CCDC61Q9Y6R9 512 aa15.93■□□□□ 0.14
PRPF40A-206ENST00000471167 GABBR2O75899 941 aa15.92■□□□□ 0.14
PRPF40A-206ENST00000471167 PHF12Q96QT6 1004 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms