RNA–Protein interactions for RNA: ENST00000470998.1

HDAC8-216, Transcript of histone deacetylase 8, humanhuman

TSL 3

Gene HDAC8, Length 329 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-216ENST00000470998 AEBP2Q6ZN18 517 aaPredicted RBP17.79■□□□□ 0.44
HDAC8-216ENST00000470998 CHIC1Q5VXU3 224 aa17.38■□□□□ 0.37
HDAC8-216ENST00000470998 SENP3Q9H4L4 574 aaPredicted RBP15.25■□□□□ 0.03
HDAC8-216ENST00000470998 PHF23Q9BUL5 403 aaPredicted RBP15.19■□□□□ 0.02
HDAC8-216ENST00000470998 PLPPR3Q6T4P5 718 aa14.15□□□□□ -0.14
HDAC8-216ENST00000470998 FOXD1Q16676 465 aa14.07□□□□□ -0.16
HDAC8-216ENST00000470998 ADRA2BP18089 450 aa13.47□□□□□ -0.25
HDAC8-216ENST00000470998 PPP6R1Q9UPN7 881 aa13.43□□□□□ -0.26
HDAC8-216ENST00000470998 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
HDAC8-216ENST00000470998 MSH5O43196 834 aa13.11□□□□□ -0.31
HDAC8-216ENST00000470998 NISCHQ9Y2I1 1504 aa12.95□□□□□ -0.34
HDAC8-216ENST00000470998 SCAF1Q9H7N4 1312 aaKnown RBP12.46□□□□□ -0.41
HDAC8-216ENST00000470998 PPP4R3CPQ6ZMV5 832 aa12.43□□□□□ -0.42
HDAC8-216ENST00000470998 MAPK8IP2Q13387 824 aaPredicted RBP12.22□□□□□ -0.45
HDAC8-216ENST00000470998 NCBP3Q53F19 620 aaKnown RBP12.17□□□□□ -0.46
HDAC8-216ENST00000470998 CNKSR2Q8WXI2 1034 aa12.12□□□□□ -0.47
HDAC8-216ENST00000470998 DMRT2Q9Y5R5 561 aa12.11□□□□□ -0.47
HDAC8-216ENST00000470998 KCNA4P22459 653 aa12.02□□□□□ -0.49
HDAC8-216ENST00000470998 POTEDQ86YR6 584 aa11.98□□□□□ -0.49
HDAC8-216ENST00000470998 NPM3O75607 178 aaKnown RBP11.88□□□□□ -0.51
HDAC8-216ENST00000470998 RNF216Q9NWF9 866 aaPredicted RBP11.88□□□□□ -0.51
HDAC8-216ENST00000470998 HOXD11P31277 338 aaPredicted RBP11.81□□□□□ -0.52
HDAC8-216ENST00000470998 DCAF8L1A6NGE4 600 aa11.73□□□□□ -0.53
HDAC8-216ENST00000470998 CCDC180Q9P1Z9 1646 aa11.58□□□□□ -0.56
HDAC8-216ENST00000470998 SLC4A1APQ9BWU0 796 aaKnown RBP11.51□□□□□ -0.57
HDAC8-216ENST00000470998 ABCC9O60706 1549 aa11.5□□□□□ -0.57
HDAC8-216ENST00000470998 DNAJC5BQ9UF47 199 aa11.48□□□□□ -0.57
HDAC8-216ENST00000470998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.37□□□□□ -0.59
HDAC8-216ENST00000470998 SLC4A2P04920 1241 aa11.18□□□□□ -0.62
HDAC8-216ENST00000470998 RNF39Q9H2S5 420 aa11.15□□□□□ -0.62
HDAC8-216ENST00000470998 FOXD4L1Q9NU39 408 aa11.15□□□□□ -0.62
HDAC8-216ENST00000470998 EHMT2Q96KQ7 1210 aa11.13□□□□□ -0.63
HDAC8-216ENST00000470998 U3KPZ7 1027 aaPredicted RBP11.08□□□□□ -0.64
HDAC8-216ENST00000470998 C1QBPQ07021 282 aaKnown RBP11.06□□□□□ -0.64
HDAC8-216ENST00000470998 MYCNP04198 464 aaPredicted RBP11.05□□□□□ -0.64
HDAC8-216ENST00000470998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.04□□□□□ -0.64
HDAC8-216ENST00000470998 HNRNPUL2Q1KMD3 747 aaKnown RBP11.04□□□□□ -0.64
HDAC8-216ENST00000470998 RB1CC1Q8TDY2 1594 aa11.03□□□□□ -0.64
HDAC8-216ENST00000470998 ZBTB22O15209 634 aa11.01□□□□□ -0.65
HDAC8-216ENST00000470998 CACNB1Q02641 598 aaPredicted RBP11.01□□□□□ -0.65
HDAC8-216ENST00000470998 APLP2Q06481 763 aa10.99□□□□□ -0.65
HDAC8-216ENST00000470998 NACADO15069 1562 aa10.99□□□□□ -0.65
HDAC8-216ENST00000470998 SAMD1Q6SPF0 538 aaPredicted RBP10.97□□□□□ -0.65
HDAC8-216ENST00000470998 MYO15BQ96JP2 1530 aa10.91□□□□□ -0.66
HDAC8-216ENST00000470998 CSRNP3Q8WYN3 585 aa10.91□□□□□ -0.66
HDAC8-216ENST00000470998 DCAF8L2P0C7V8 631 aa10.89□□□□□ -0.67
HDAC8-216ENST00000470998 CAPN15O75808 1086 aa10.85□□□□□ -0.67
HDAC8-216ENST00000470998 SPINK5Q9NQ38 1064 aaPredicted RBP10.79□□□□□ -0.68
HDAC8-216ENST00000470998 TRHP20396 242 aaPredicted RBP10.78□□□□□ -0.68
HDAC8-216ENST00000470998 ZNF219Q9P2Y4 722 aaPredicted RBP10.78□□□□□ -0.68
HDAC8-216ENST00000470998 DCAF1Q9Y4B6 1507 aa10.76□□□□□ -0.69
HDAC8-216ENST00000470998 ZCCHC6Q5VYS8 1495 aaKnown RBP10.75□□□□□ -0.69
HDAC8-216ENST00000470998 ATXN8OSP0DMR3 200 aa10.75□□□□□ -0.69
HDAC8-216ENST00000470998 PABPN1Q86U42 306 aaKnown RBP eCLIP10.74□□□□□ -0.69
HDAC8-216ENST00000470998 SHROOM4Q9ULL8 1493 aa10.65□□□□□ -0.7
HDAC8-216ENST00000470998 BICRAQ9NZM4 1560 aa10.65□□□□□ -0.71
HDAC8-216ENST00000470998 ATF5Q9Y2D1 282 aaPredicted RBP10.64□□□□□ -0.71
HDAC8-216ENST00000470998 UNC13AQ9UPW8 1703 aa10.64□□□□□ -0.71
HDAC8-216ENST00000470998 ABCB7O75027 752 aa10.61□□□□□ -0.71
HDAC8-216ENST00000470998 DSG3P32926 999 aa10.58□□□□□ -0.72
HDAC8-216ENST00000470998 POLA2Q14181 598 aa10.54□□□□□ -0.72
HDAC8-216ENST00000470998 SCRIBQ14160 1630 aa10.5□□□□□ -0.73
HDAC8-216ENST00000470998 ZBTB12Q9Y330 459 aaPredicted RBP10.44□□□□□ -0.74
HDAC8-216ENST00000470998 EIF4G1Q04637 1599 aaKnown RBP10.41□□□□□ -0.74
HDAC8-216ENST00000470998 CECR2Q9BXF3 1484 aa10.4□□□□□ -0.74
HDAC8-216ENST00000470998 CC2D2AQ9P2K1 1620 aa10.39□□□□□ -0.75
HDAC8-216ENST00000470998 FBLN2P98095 1184 aa10.38□□□□□ -0.75
HDAC8-216ENST00000470998 RBM42Q9BTD8 480 aaKnown RBP10.21□□□□□ -0.77
HDAC8-216ENST00000470998 OSCARQ8IYS5 282 aa10.2□□□□□ -0.78
HDAC8-216ENST00000470998 MKRN4PQ13434 485 aaPredicted RBP10.17□□□□□ -0.78
HDAC8-216ENST00000470998 NCAPD3P42695 1498 aa10.16□□□□□ -0.78
HDAC8-216ENST00000470998 SPDYE2BA6NHP3 402 aa10.1□□□□□ -0.79
HDAC8-216ENST00000470998 SPDYE6P0CI01 402 aa10.1□□□□□ -0.79
HDAC8-216ENST00000470998 SPDYE2Q495Y8 402 aa10.1□□□□□ -0.79
HDAC8-216ENST00000470998 ATAD2BQ9ULI0 1458 aa10.1□□□□□ -0.79
HDAC8-216ENST00000470998 SMARCA2P51531 1590 aa10.09□□□□□ -0.79
HDAC8-216ENST00000470998 BAZ1AQ9NRL2 1556 aaPredicted RBP10.07□□□□□ -0.8
HDAC8-216ENST00000470998 ZNF692Q9BU19 519 aaPredicted RBP10.07□□□□□ -0.8
HDAC8-216ENST00000470998 SMARCA4P51532 1647 aa10.06□□□□□ -0.8
HDAC8-216ENST00000470998 HMGXB3Q12766 1538 aa10.06□□□□□ -0.8
HDAC8-216ENST00000470998 SPDYE4A6NLX3 237 aa10.02□□□□□ -0.81
HDAC8-216ENST00000470998 PEG3Q9GZU2 1588 aa10.01□□□□□ -0.81
HDAC8-216ENST00000470998 BAZ1BQ9UIG0 1483 aaKnown RBP10□□□□□ -0.81
HDAC8-216ENST00000470998 AKT1S1Q96B36 256 aa10□□□□□ -0.81
HDAC8-216ENST00000470998 CUX2O14529 1486 aa9.98□□□□□ -0.81
HDAC8-216ENST00000470998 FKBP8Q14318 412 aa9.97□□□□□ -0.81
HDAC8-216ENST00000470998 ERCC6Q03468 1493 aa9.97□□□□□ -0.81
HDAC8-216ENST00000470998 SSUH2Q9Y2M2 353 aa9.95□□□□□ -0.82
HDAC8-216ENST00000470998 MROH2BQ7Z745 1585 aa9.95□□□□□ -0.82
HDAC8-216ENST00000470998 DNAJC5Q9H3Z4 198 aa9.9□□□□□ -0.82
HDAC8-216ENST00000470998 LAMC3Q9Y6N6 1575 aa9.89□□□□□ -0.83
HDAC8-216ENST00000470998 REM2Q8IYK8 340 aaPredicted RBP9.88□□□□□ -0.83
HDAC8-216ENST00000470998 NESP48681 1621 aa9.88□□□□□ -0.83
HDAC8-216ENST00000470998 PDS5BQ9NTI5 1447 aa9.87□□□□□ -0.83
HDAC8-216ENST00000470998 CADPSQ9ULU8 1353 aa9.85□□□□□ -0.83
HDAC8-216ENST00000470998 SPDYE1Q8NFV5 336 aaPredicted RBP9.84□□□□□ -0.83
HDAC8-216ENST00000470998 CLEC11AQ9Y240 323 aa9.83□□□□□ -0.84
HDAC8-216ENST00000470998 RSF1Q96T23 1441 aaPredicted RBP9.8□□□□□ -0.84
HDAC8-216ENST00000470998 WIZO95785 1651 aa9.79□□□□□ -0.84
HDAC8-216ENST00000470998 STAG3Q9UJ98 1225 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms