RNA–Protein interactions for RNA: ENST00000470998.1

HDAC8-216, Transcript of histone deacetylase 8, humanhuman

TSL 3

Gene HDAC8, Length 329 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-216ENST00000470998 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.24□□□□□ -1.418e-7■■■■■ 271.7
HDAC8-216ENST00000470998 SF3B4Q15427 424 aaKnown RBP eCLIP4.91□□□□□ -1.624e-73■■■■■ 236.6
HDAC8-216ENST00000470998 SF3B1O75533 1304 aaKnown RBP eCLIP5.89□□□□□ -1.472e-6■■■■■ 105.2
HDAC8-216ENST00000470998 SF3A3Q12874 501 aaKnown RBP eCLIP5.61□□□□□ -1.511e-323■■■■■ 83.9
HDAC8-216ENST00000470998 GPKOWQ92917 476 aaPredicted RBP eCLIP6.88□□□□□ -1.311e-19■■■■■ 59.4
HDAC8-216ENST00000470998 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.13□□□□□ -1.434e-7■■■■■ 56.2
HDAC8-216ENST00000470998 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.43□□□□□ -1.79e-10■■■■■ 36.7
HDAC8-216ENST00000470998 PCBP2Q15366 365 aaKnown RBP eCLIP5.57□□□□□ -1.521e-8■■■■■ 36
HDAC8-216ENST00000470998 SMNDC1O75940 238 aaKnown RBP eCLIP5.91□□□□□ -1.461e-16■■■■■ 35
HDAC8-216ENST00000470998 PTBP1P26599 531 aaKnown RBP eCLIP5.19□□□□□ -1.582e-7■■■■■ 29.7
HDAC8-216ENST00000470998 NSUN2Q08J23 767 aaKnown RBP eCLIP5.69□□□□□ -1.51e-5■■■■□ 24.6
HDAC8-216ENST00000470998 LARP4Q71RC2 724 aaKnown RBP eCLIP5.56□□□□□ -1.521e-6■■■□□ 19.2
HDAC8-216ENST00000470998 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.1□□□□□ -1.435e-7■■■□□ 18.9
HDAC8-216ENST00000470998 QKIQ96PU8 341 aaKnown RBP eCLIP5.84□□□□□ -1.471e-6■■□□□ 12.8
Retrieved 14 of 14 RNA–protein pairs in 12.6 ms