RNA–Protein interactions for RNA: ENST00000469479.1

VPS8-219, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 4

Gene VPS8, Length 583 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-219ENST00000469479 AEBP2Q6ZN18 517 aaPredicted RBP31.72■■■□□ 2.67
VPS8-219ENST00000469479 CHIC1Q5VXU3 224 aa29.74■■■□□ 2.35
VPS8-219ENST00000469479 SENP3Q9H4L4 574 aaPredicted RBP27.25■■□□□ 1.95
VPS8-219ENST00000469479 PHF23Q9BUL5 403 aaPredicted RBP26.79■■□□□ 1.88
VPS8-219ENST00000469479 FOXD1Q16676 465 aa25.43■■□□□ 1.66
VPS8-219ENST00000469479 POTEDQ86YR6 584 aa24.63■■□□□ 1.53
VPS8-219ENST00000469479 MSH5O43196 834 aa24.13■■□□□ 1.45
VPS8-219ENST00000469479 PIAS4Q8N2W9 510 aaPredicted RBP23.65■■□□□ 1.38
VPS8-219ENST00000469479 PLPPR3Q6T4P5 718 aa23.33■■□□□ 1.33
VPS8-219ENST00000469479 PPP6R1Q9UPN7 881 aa23.25■■□□□ 1.31
VPS8-219ENST00000469479 ADRA2BP18089 450 aa23.17■■□□□ 1.3
VPS8-219ENST00000469479 MAPK8IP2Q13387 824 aaPredicted RBP21.48■■□□□ 1.03
VPS8-219ENST00000469479 DMRT2Q9Y5R5 561 aa21.47■■□□□ 1.03
VPS8-219ENST00000469479 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
VPS8-219ENST00000469479 CACNB1Q02641 598 aaPredicted RBP21.13■□□□□ 0.97
VPS8-219ENST00000469479 DCAF8L1A6NGE4 600 aa20.73■□□□□ 0.91
VPS8-219ENST00000469479 RNF39Q9H2S5 420 aa20.48■□□□□ 0.87
VPS8-219ENST00000469479 HOXD11P31277 338 aaPredicted RBP20.41■□□□□ 0.86
VPS8-219ENST00000469479 PPP4R3CPQ6ZMV5 832 aa20.35■□□□□ 0.85
VPS8-219ENST00000469479 C1QBPQ07021 282 aaKnown RBP20.18■□□□□ 0.82
VPS8-219ENST00000469479 CNKSR2Q8WXI2 1034 aa20.13■□□□□ 0.81
VPS8-219ENST00000469479 RNF216Q9NWF9 866 aaPredicted RBP20.11■□□□□ 0.81
VPS8-219ENST00000469479 DNAJC5BQ9UF47 199 aa19.85■□□□□ 0.77
VPS8-219ENST00000469479 NCBP3Q53F19 620 aaKnown RBP19.55■□□□□ 0.72
VPS8-219ENST00000469479 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.54■□□□□ 0.72
VPS8-219ENST00000469479 POTEHQ6S545 545 aa19.2■□□□□ 0.66
VPS8-219ENST00000469479 NPM3O75607 178 aaKnown RBP19.16■□□□□ 0.66
VPS8-219ENST00000469479 CAPN15O75808 1086 aa18.97■□□□□ 0.63
VPS8-219ENST00000469479 DSG3P32926 999 aa18.96■□□□□ 0.63
VPS8-219ENST00000469479 U3KPZ7 1027 aaPredicted RBP18.96■□□□□ 0.63
VPS8-219ENST00000469479 SPINK5Q9NQ38 1064 aaPredicted RBP18.91■□□□□ 0.62
VPS8-219ENST00000469479 KCNA4P22459 653 aa18.58■□□□□ 0.56
VPS8-219ENST00000469479 TRHP20396 242 aaPredicted RBP18.5■□□□□ 0.55
VPS8-219ENST00000469479 APLP2Q06481 763 aa18.48■□□□□ 0.55
VPS8-219ENST00000469479 ZNF219Q9P2Y4 722 aaPredicted RBP18.44■□□□□ 0.54
VPS8-219ENST00000469479 ABCB7O75027 752 aa18.43■□□□□ 0.54
VPS8-219ENST00000469479 SLC4A2P04920 1241 aa18.35■□□□□ 0.53
VPS8-219ENST00000469479 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.29■□□□□ 0.52
VPS8-219ENST00000469479 HNRNPUL2Q1KMD3 747 aaKnown RBP18.29■□□□□ 0.52
VPS8-219ENST00000469479 RBM42Q9BTD8 480 aaKnown RBP18.17■□□□□ 0.5
VPS8-219ENST00000469479 SAMD1Q6SPF0 538 aaPredicted RBP18.13■□□□□ 0.49
VPS8-219ENST00000469479 CHRDL2Q6WN34 429 aa18■□□□□ 0.47
VPS8-219ENST00000469479 POLA2Q14181 598 aa17.84■□□□□ 0.45
VPS8-219ENST00000469479 MYCNP04198 464 aaPredicted RBP17.78■□□□□ 0.44
VPS8-219ENST00000469479 SP7Q8TDD2 431 aaPredicted RBP17.68■□□□□ 0.42
VPS8-219ENST00000469479 AKT1S1Q96B36 256 aa17.58■□□□□ 0.4
VPS8-219ENST00000469479 SLC4A1APQ9BWU0 796 aaKnown RBP17.55■□□□□ 0.4
VPS8-219ENST00000469479 FOXD4L1Q9NU39 408 aa17.47■□□□□ 0.39
VPS8-219ENST00000469479 ZBTB12Q9Y330 459 aaPredicted RBP17.44■□□□□ 0.38
VPS8-219ENST00000469479 REM2Q8IYK8 340 aaPredicted RBP17.4■□□□□ 0.38
VPS8-219ENST00000469479 PIP4P2Q8N4L2 257 aa17.4■□□□□ 0.38
VPS8-219ENST00000469479 HAX1O00165 279 aa17.34■□□□□ 0.37
VPS8-219ENST00000469479 ATF5Q9Y2D1 282 aaPredicted RBP17.28■□□□□ 0.36
VPS8-219ENST00000469479 OSCARQ8IYS5 282 aa17.26■□□□□ 0.35
VPS8-219ENST00000469479 PITPNM1O00562 1244 aa17.21■□□□□ 0.35
VPS8-219ENST00000469479 FXR2P51116 673 aaKnown RBP eCLIP17.19■□□□□ 0.34
VPS8-219ENST00000469479 ZBTB22O15209 634 aa17.03■□□□□ 0.32
VPS8-219ENST00000469479 ATXN8OSP0DMR3 200 aa17.01■□□□□ 0.31
VPS8-219ENST00000469479 EVX2Q03828 476 aa16.98■□□□□ 0.31
VPS8-219ENST00000469479 SPDYE2BA6NHP3 402 aa16.82■□□□□ 0.28
VPS8-219ENST00000469479 SPDYE6P0CI01 402 aa16.82■□□□□ 0.28
VPS8-219ENST00000469479 SPDYE2Q495Y8 402 aa16.82■□□□□ 0.28
VPS8-219ENST00000469479 PRKAR2AP13861 404 aaKnown RBP16.79■□□□□ 0.28
VPS8-219ENST00000469479 FBLN2P98095 1184 aa16.76■□□□□ 0.27
VPS8-219ENST00000469479 CLEC11AQ9Y240 323 aa16.75■□□□□ 0.27
VPS8-219ENST00000469479 SPDYE1Q8NFV5 336 aaPredicted RBP16.71■□□□□ 0.27
VPS8-219ENST00000469479 C19orf67A6NJJ6 358 aa16.67■□□□□ 0.26
VPS8-219ENST00000469479 GABBR2O75899 941 aa16.6■□□□□ 0.25
VPS8-219ENST00000469479 LHX8Q68G74 356 aa16.6■□□□□ 0.25
VPS8-219ENST00000469479 ZNF692Q9BU19 519 aaPredicted RBP16.55■□□□□ 0.24
VPS8-219ENST00000469479 MKRN4PQ13434 485 aaPredicted RBP16.49■□□□□ 0.23
VPS8-219ENST00000469479 SSUH2Q9Y2M2 353 aa16.47■□□□□ 0.23
VPS8-219ENST00000469479 CHADLQ6NUI6 762 aa16.44■□□□□ 0.22
VPS8-219ENST00000469479 PRR29P0C7W0 189 aa16.37■□□□□ 0.21
VPS8-219ENST00000469479 PABPN1Q86U42 306 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS8-219ENST00000469479 CD44P16070 742 aaKnown RBP16.22■□□□□ 0.19
VPS8-219ENST00000469479 POTEIP0CG38 1075 aa16.2■□□□□ 0.18
VPS8-219ENST00000469479 CLCN6P51797 869 aa16.17■□□□□ 0.18
VPS8-219ENST00000469479 FARP1Q9Y4F1 1045 aaPredicted RBP16.14■□□□□ 0.17
VPS8-219ENST00000469479 PLSCR2Q9NRY7 297 aa16.13■□□□□ 0.17
VPS8-219ENST00000469479 CSRNP3Q8WYN3 585 aa16.11■□□□□ 0.17
VPS8-219ENST00000469479 DCBLD2Q96PD2 775 aa16.08■□□□□ 0.16
VPS8-219ENST00000469479 ZNF579Q8NAF0 562 aaKnown RBP15.91■□□□□ 0.14
VPS8-219ENST00000469479 ZRANB1Q9UGI0 708 aa15.9■□□□□ 0.14
VPS8-219ENST00000469479 STAG3Q9UJ98 1225 aa15.79■□□□□ 0.12
VPS8-219ENST00000469479 GALR2O43603 387 aaPredicted RBP15.76■□□□□ 0.11
VPS8-219ENST00000469479 OTUD5Q96G74 571 aa15.76■□□□□ 0.11
VPS8-219ENST00000469479 EHMT2Q96KQ7 1210 aa15.75■□□□□ 0.11
VPS8-219ENST00000469479 CREBZFQ9NS37 354 aa15.73■□□□□ 0.11
VPS8-219ENST00000469479 SPDYE4A6NLX3 237 aa15.67■□□□□ 0.1
VPS8-219ENST00000469479 PAK3O75914 559 aaPredicted RBP15.67■□□□□ 0.1
VPS8-219ENST00000469479 POTEMA6NI47 508 aa15.66■□□□□ 0.1
VPS8-219ENST00000469479 POTEB2H3BUK9 544 aa15.65■□□□□ 0.1
VPS8-219ENST00000469479 POTEGQ6S5H5 508 aa15.59■□□□□ 0.09
VPS8-219ENST00000469479 PHF12Q96QT6 1004 aa15.58■□□□□ 0.08
VPS8-219ENST00000469479 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
VPS8-219ENST00000469479 PELP1Q8IZL8 1130 aaKnown RBP15.5■□□□□ 0.07
VPS8-219ENST00000469479 PCDH10Q9P2E7 1040 aa15.48■□□□□ 0.07
VPS8-219ENST00000469479 METRNQ9UJH8 293 aa15.42■□□□□ 0.06
VPS8-219ENST00000469479 SLC39A7Q92504 469 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms