RNA–Protein interactions for RNA: ENST00000467707.1

GAPVD1-211, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 3

Gene GAPVD1, Length 787 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-211ENST00000467707 AEBP2Q6ZN18 517 aaPredicted RBP22.48■■□□□ 1.19
GAPVD1-211ENST00000467707 CHIC1Q5VXU3 224 aa22.47■■□□□ 1.19
GAPVD1-211ENST00000467707 PHF23Q9BUL5 403 aaPredicted RBP19.73■□□□□ 0.75
GAPVD1-211ENST00000467707 SENP3Q9H4L4 574 aaPredicted RBP19.16■□□□□ 0.66
GAPVD1-211ENST00000467707 PLPPR3Q6T4P5 718 aa18.5■□□□□ 0.55
GAPVD1-211ENST00000467707 FOXD1Q16676 465 aa17.62■□□□□ 0.41
GAPVD1-211ENST00000467707 ADRA2BP18089 450 aa17.26■□□□□ 0.35
GAPVD1-211ENST00000467707 PPP6R1Q9UPN7 881 aa17.24■□□□□ 0.35
GAPVD1-211ENST00000467707 PIAS4Q8N2W9 510 aaPredicted RBP16.76■□□□□ 0.27
GAPVD1-211ENST00000467707 KCNA4P22459 653 aa16.34■□□□□ 0.21
GAPVD1-211ENST00000467707 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
GAPVD1-211ENST00000467707 MSH5O43196 834 aa16.21■□□□□ 0.19
GAPVD1-211ENST00000467707 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
GAPVD1-211ENST00000467707 SCAF1Q9H7N4 1312 aaKnown RBP15.98■□□□□ 0.15
GAPVD1-211ENST00000467707 CNKSR2Q8WXI2 1034 aa15.79■□□□□ 0.12
GAPVD1-211ENST00000467707 NPM3O75607 178 aaKnown RBP15.74■□□□□ 0.11
GAPVD1-211ENST00000467707 SLC4A1APQ9BWU0 796 aaKnown RBP15.7■□□□□ 0.1
GAPVD1-211ENST00000467707 EHMT2Q96KQ7 1210 aa15.68■□□□□ 0.1
GAPVD1-211ENST00000467707 MAPK8IP2Q13387 824 aaPredicted RBP15.5■□□□□ 0.07
GAPVD1-211ENST00000467707 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
GAPVD1-211ENST00000467707 DNAJC5BQ9UF47 199 aa15.38■□□□□ 0.05
GAPVD1-211ENST00000467707 DMRT2Q9Y5R5 561 aa15.33■□□□□ 0.04
GAPVD1-211ENST00000467707 CSRNP3Q8WYN3 585 aa15.32■□□□□ 0.04
GAPVD1-211ENST00000467707 HOXD11P31277 338 aaPredicted RBP15.2■□□□□ 0.02
GAPVD1-211ENST00000467707 ZBTB22O15209 634 aa15.02■□□□□ -0
GAPVD1-211ENST00000467707 FOXD4L1Q9NU39 408 aa15.01□□□□□ -0.01
GAPVD1-211ENST00000467707 SLC4A2P04920 1241 aa14.73□□□□□ -0.05
GAPVD1-211ENST00000467707 MYCNP04198 464 aaPredicted RBP14.6□□□□□ -0.07
GAPVD1-211ENST00000467707 DCAF8L1A6NGE4 600 aa14.58□□□□□ -0.08
GAPVD1-211ENST00000467707 ATXN8OSP0DMR3 200 aa14.53□□□□□ -0.08
GAPVD1-211ENST00000467707 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.47□□□□□ -0.09
GAPVD1-211ENST00000467707 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.37□□□□□ -0.11
GAPVD1-211ENST00000467707 HNRNPUL2Q1KMD3 747 aaKnown RBP14.37□□□□□ -0.11
GAPVD1-211ENST00000467707 SAMD1Q6SPF0 538 aaPredicted RBP14.3□□□□□ -0.12
GAPVD1-211ENST00000467707 U3KPZ7 1027 aaPredicted RBP14.24□□□□□ -0.13
GAPVD1-211ENST00000467707 APLP2Q06481 763 aa14.14□□□□□ -0.15
GAPVD1-211ENST00000467707 ATF5Q9Y2D1 282 aaPredicted RBP14.03□□□□□ -0.16
GAPVD1-211ENST00000467707 POTEDQ86YR6 584 aa13.88□□□□□ -0.19
GAPVD1-211ENST00000467707 ZNF219Q9P2Y4 722 aaPredicted RBP13.88□□□□□ -0.19
GAPVD1-211ENST00000467707 RNF39Q9H2S5 420 aa13.87□□□□□ -0.19
GAPVD1-211ENST00000467707 FKBP8Q14318 412 aa13.84□□□□□ -0.19
GAPVD1-211ENST00000467707 C1QBPQ07021 282 aaKnown RBP13.8□□□□□ -0.2
GAPVD1-211ENST00000467707 TRHP20396 242 aaPredicted RBP13.66□□□□□ -0.22
GAPVD1-211ENST00000467707 SPINK5Q9NQ38 1064 aaPredicted RBP13.66□□□□□ -0.22
GAPVD1-211ENST00000467707 CAPN15O75808 1086 aa13.65□□□□□ -0.22
GAPVD1-211ENST00000467707 FBLN2P98095 1184 aa13.58□□□□□ -0.24
GAPVD1-211ENST00000467707 POLA2Q14181 598 aa13.57□□□□□ -0.24
GAPVD1-211ENST00000467707 ZBTB12Q9Y330 459 aaPredicted RBP13.52□□□□□ -0.25
GAPVD1-211ENST00000467707 MKRN4PQ13434 485 aaPredicted RBP13.49□□□□□ -0.25
GAPVD1-211ENST00000467707 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
GAPVD1-211ENST00000467707 SPDYE4A6NLX3 237 aa13.46□□□□□ -0.25
GAPVD1-211ENST00000467707 FBXO3Q9UK99 471 aa13.37□□□□□ -0.27
GAPVD1-211ENST00000467707 ABCB7O75027 752 aa13.36□□□□□ -0.27
GAPVD1-211ENST00000467707 PROM2Q8N271 834 aa13.33□□□□□ -0.28
GAPVD1-211ENST00000467707 DSG3P32926 999 aa13.32□□□□□ -0.28
GAPVD1-211ENST00000467707 RTN4Q9NQC3 1192 aaKnown RBP13.31□□□□□ -0.28
GAPVD1-211ENST00000467707 CACNB1Q02641 598 aaPredicted RBP13.18□□□□□ -0.3
GAPVD1-211ENST00000467707 SPDYE2BA6NHP3 402 aa13.14□□□□□ -0.31
GAPVD1-211ENST00000467707 SPDYE6P0CI01 402 aa13.14□□□□□ -0.31
GAPVD1-211ENST00000467707 SPDYE2Q495Y8 402 aa13.14□□□□□ -0.31
GAPVD1-211ENST00000467707 ZNF692Q9BU19 519 aaPredicted RBP13.09□□□□□ -0.31
GAPVD1-211ENST00000467707 VASPP50552 380 aaPredicted RBP13.08□□□□□ -0.32
GAPVD1-211ENST00000467707 OSCARQ8IYS5 282 aa13.07□□□□□ -0.32
GAPVD1-211ENST00000467707 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
GAPVD1-211ENST00000467707 STAG3Q9UJ98 1225 aa12.97□□□□□ -0.33
GAPVD1-211ENST00000467707 PABPN1Q86U42 306 aaKnown RBP eCLIP12.91□□□□□ -0.34
GAPVD1-211ENST00000467707 IFNLR1Q8IU57 520 aaPredicted RBP12.89□□□□□ -0.35
GAPVD1-211ENST00000467707 SLC24A1O60721 1099 aa12.8□□□□□ -0.36
GAPVD1-211ENST00000467707 RBM42Q9BTD8 480 aaKnown RBP12.8□□□□□ -0.36
GAPVD1-211ENST00000467707 PLCD3Q8N3E9 789 aa12.76□□□□□ -0.37
GAPVD1-211ENST00000467707 KLHL34Q8N239 644 aa12.75□□□□□ -0.37
GAPVD1-211ENST00000467707 PLEKHG5O94827 1062 aa12.73□□□□□ -0.37
GAPVD1-211ENST00000467707 SPOCK2Q92563 424 aa12.73□□□□□ -0.37
GAPVD1-211ENST00000467707 MIER1Q8N108 512 aa12.72□□□□□ -0.37
GAPVD1-211ENST00000467707 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
GAPVD1-211ENST00000467707 AKT1S1Q96B36 256 aa12.69□□□□□ -0.38
GAPVD1-211ENST00000467707 PKD2Q13563 968 aa12.63□□□□□ -0.39
GAPVD1-211ENST00000467707 SPDYE1Q8NFV5 336 aaPredicted RBP12.63□□□□□ -0.39
GAPVD1-211ENST00000467707 REM2Q8IYK8 340 aaPredicted RBP12.51□□□□□ -0.41
GAPVD1-211ENST00000467707 ECM2O94769 699 aaPredicted RBP12.5□□□□□ -0.41
GAPVD1-211ENST00000467707 DCAF8L2P0C7V8 631 aa12.49□□□□□ -0.41
GAPVD1-211ENST00000467707 PRR29P0C7W0 189 aa12.47□□□□□ -0.41
GAPVD1-211ENST00000467707 TRIM41Q8WV44 630 aa12.46□□□□□ -0.41
GAPVD1-211ENST00000467707 CLEC11AQ9Y240 323 aa12.46□□□□□ -0.41
GAPVD1-211ENST00000467707 CIZ1Q9ULV3 898 aaPredicted RBP12.41□□□□□ -0.42
GAPVD1-211ENST00000467707 PLCB2Q00722 1185 aa12.4□□□□□ -0.42
GAPVD1-211ENST00000467707 GSE1Q14687 1217 aa12.4□□□□□ -0.42
GAPVD1-211ENST00000467707 CREBZFQ9NS37 354 aa12.36□□□□□ -0.43
GAPVD1-211ENST00000467707 PITPNM1O00562 1244 aa12.34□□□□□ -0.43
GAPVD1-211ENST00000467707 NUBP1P53384 320 aa12.33□□□□□ -0.44
GAPVD1-211ENST00000467707 RGL2O15211 777 aa12.32□□□□□ -0.44
GAPVD1-211ENST00000467707 BBXQ8WY36 941 aaPredicted RBP12.3□□□□□ -0.44
GAPVD1-211ENST00000467707 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.3□□□□□ -0.44
GAPVD1-211ENST00000467707 MNX1P50219 401 aaPredicted RBP12.29□□□□□ -0.44
GAPVD1-211ENST00000467707 FAM212AQ96EL1 285 aa12.29□□□□□ -0.44
GAPVD1-211ENST00000467707 NPM1P06748 294 aaKnown RBP eCLIP12.28□□□□□ -0.44
GAPVD1-211ENST00000467707 DCAF8Q5TAQ9 597 aa12.25□□□□□ -0.45
GAPVD1-211ENST00000467707 TAOK2Q9UL54 1235 aa12.24□□□□□ -0.45
GAPVD1-211ENST00000467707 CHRM1P11229 460 aaPredicted RBP12.18□□□□□ -0.46
GAPVD1-211ENST00000467707 HAP1P54257 671 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms