RNA–Protein interactions for RNA: ENST00000467275.1

ATG3-204, Transcript of autophagy related 3, humanhuman

TSL 3

Gene ATG3, Length 559 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-204ENST00000467275 AEBP2Q6ZN18 517 aaPredicted RBP31.3■■■□□ 2.6
ATG3-204ENST00000467275 CHIC1Q5VXU3 224 aa30.13■■■□□ 2.41
ATG3-204ENST00000467275 SENP3Q9H4L4 574 aaPredicted RBP26.7■■□□□ 1.86
ATG3-204ENST00000467275 PHF23Q9BUL5 403 aaPredicted RBP26.41■■□□□ 1.82
ATG3-204ENST00000467275 FOXD1Q16676 465 aa24.81■■□□□ 1.56
ATG3-204ENST00000467275 PLPPR3Q6T4P5 718 aa24.28■■□□□ 1.48
ATG3-204ENST00000467275 PPP6R1Q9UPN7 881 aa23.47■■□□□ 1.35
ATG3-204ENST00000467275 ADRA2BP18089 450 aa23.45■■□□□ 1.34
ATG3-204ENST00000467275 PIAS4Q8N2W9 510 aaPredicted RBP23.32■■□□□ 1.32
ATG3-204ENST00000467275 MSH5O43196 834 aa23.11■■□□□ 1.29
ATG3-204ENST00000467275 POTEDQ86YR6 584 aa21.88■■□□□ 1.09
ATG3-204ENST00000467275 SCAF1Q9H7N4 1312 aaKnown RBP21.52■■□□□ 1.03
ATG3-204ENST00000467275 MAPK8IP2Q13387 824 aaPredicted RBP21.42■■□□□ 1.02
ATG3-204ENST00000467275 PPP4R3CPQ6ZMV5 832 aa21.32■■□□□ 1
ATG3-204ENST00000467275 DMRT2Q9Y5R5 561 aa21.21■□□□□ 0.99
ATG3-204ENST00000467275 CNKSR2Q8WXI2 1034 aa20.84■□□□□ 0.93
ATG3-204ENST00000467275 NCBP3Q53F19 620 aaKnown RBP20.66■□□□□ 0.9
ATG3-204ENST00000467275 HOXD11P31277 338 aaPredicted RBP20.57■□□□□ 0.88
ATG3-204ENST00000467275 RNF216Q9NWF9 866 aaPredicted RBP20.54■□□□□ 0.88
ATG3-204ENST00000467275 DCAF8L1A6NGE4 600 aa20.41■□□□□ 0.86
ATG3-204ENST00000467275 NPM3O75607 178 aaKnown RBP20.3■□□□□ 0.84
ATG3-204ENST00000467275 KCNA4P22459 653 aa20.26■□□□□ 0.83
ATG3-204ENST00000467275 DNAJC5BQ9UF47 199 aa19.78■□□□□ 0.76
ATG3-204ENST00000467275 RNF39Q9H2S5 420 aa19.72■□□□□ 0.75
ATG3-204ENST00000467275 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.67■□□□□ 0.74
ATG3-204ENST00000467275 CACNB1Q02641 598 aaPredicted RBP19.62■□□□□ 0.73
ATG3-204ENST00000467275 C1QBPQ07021 282 aaKnown RBP19.48■□□□□ 0.71
ATG3-204ENST00000467275 SLC4A2P04920 1241 aa19.27■□□□□ 0.68
ATG3-204ENST00000467275 U3KPZ7 1027 aaPredicted RBP19.24■□□□□ 0.67
ATG3-204ENST00000467275 SLC4A1APQ9BWU0 796 aaKnown RBP19.23■□□□□ 0.67
ATG3-204ENST00000467275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
ATG3-204ENST00000467275 HNRNPUL2Q1KMD3 747 aaKnown RBP18.89■□□□□ 0.61
ATG3-204ENST00000467275 CAPN15O75808 1086 aa18.86■□□□□ 0.61
ATG3-204ENST00000467275 SPINK5Q9NQ38 1064 aaPredicted RBP18.86■□□□□ 0.61
ATG3-204ENST00000467275 APLP2Q06481 763 aa18.82■□□□□ 0.6
ATG3-204ENST00000467275 FOXD4L1Q9NU39 408 aa18.8■□□□□ 0.6
ATG3-204ENST00000467275 MYCNP04198 464 aaPredicted RBP18.79■□□□□ 0.6
ATG3-204ENST00000467275 SAMD1Q6SPF0 538 aaPredicted RBP18.78■□□□□ 0.6
ATG3-204ENST00000467275 TRHP20396 242 aaPredicted RBP18.65■□□□□ 0.58
ATG3-204ENST00000467275 DSG3P32926 999 aa18.61■□□□□ 0.57
ATG3-204ENST00000467275 ZNF219Q9P2Y4 722 aaPredicted RBP18.61■□□□□ 0.57
ATG3-204ENST00000467275 ZBTB22O15209 634 aa18.59■□□□□ 0.57
ATG3-204ENST00000467275 ABCB7O75027 752 aa18.44■□□□□ 0.54
ATG3-204ENST00000467275 ATF5Q9Y2D1 282 aaPredicted RBP18.29■□□□□ 0.52
ATG3-204ENST00000467275 POLA2Q14181 598 aa18.22■□□□□ 0.51
ATG3-204ENST00000467275 ATXN8OSP0DMR3 200 aa18.18■□□□□ 0.5
ATG3-204ENST00000467275 EHMT2Q96KQ7 1210 aa18.13■□□□□ 0.49
ATG3-204ENST00000467275 CSRNP3Q8WYN3 585 aa18.11■□□□□ 0.49
ATG3-204ENST00000467275 ZBTB12Q9Y330 459 aaPredicted RBP17.89■□□□□ 0.45
ATG3-204ENST00000467275 RBM42Q9BTD8 480 aaKnown RBP17.79■□□□□ 0.44
ATG3-204ENST00000467275 FBLN2P98095 1184 aa17.63■□□□□ 0.41
ATG3-204ENST00000467275 OSCARQ8IYS5 282 aa17.6■□□□□ 0.41
ATG3-204ENST00000467275 MKRN4PQ13434 485 aaPredicted RBP17.46■□□□□ 0.39
ATG3-204ENST00000467275 AKT1S1Q96B36 256 aa17.44■□□□□ 0.38
ATG3-204ENST00000467275 SPDYE2BA6NHP3 402 aa17.35■□□□□ 0.37
ATG3-204ENST00000467275 SPDYE6P0CI01 402 aa17.35■□□□□ 0.37
ATG3-204ENST00000467275 SPDYE2Q495Y8 402 aa17.35■□□□□ 0.37
ATG3-204ENST00000467275 REM2Q8IYK8 340 aaPredicted RBP17.27■□□□□ 0.36
ATG3-204ENST00000467275 POTEHQ6S545 545 aa17.24■□□□□ 0.35
ATG3-204ENST00000467275 CHRDL2Q6WN34 429 aa17.23■□□□□ 0.35
ATG3-204ENST00000467275 ZNF692Q9BU19 519 aaPredicted RBP17.23■□□□□ 0.35
ATG3-204ENST00000467275 SSUH2Q9Y2M2 353 aa17.13■□□□□ 0.33
ATG3-204ENST00000467275 PITPNM1O00562 1244 aa17.07■□□□□ 0.32
ATG3-204ENST00000467275 PABPN1Q86U42 306 aaKnown RBP eCLIP16.98■□□□□ 0.31
ATG3-204ENST00000467275 SPDYE1Q8NFV5 336 aaPredicted RBP16.97■□□□□ 0.31
ATG3-204ENST00000467275 CLEC11AQ9Y240 323 aa16.95■□□□□ 0.3
ATG3-204ENST00000467275 SPDYE4A6NLX3 237 aa16.89■□□□□ 0.29
ATG3-204ENST00000467275 PIP4P2Q8N4L2 257 aa16.89■□□□□ 0.29
ATG3-204ENST00000467275 FXR2P51116 673 aaKnown RBP eCLIP16.83■□□□□ 0.28
ATG3-204ENST00000467275 PRR29P0C7W0 189 aa16.72■□□□□ 0.27
ATG3-204ENST00000467275 PRKAR2AP13861 404 aaKnown RBP16.66■□□□□ 0.26
ATG3-204ENST00000467275 STAG3Q9UJ98 1225 aa16.61■□□□□ 0.25
ATG3-204ENST00000467275 CHADLQ6NUI6 762 aa16.55■□□□□ 0.24
ATG3-204ENST00000467275 HAX1O00165 279 aa16.53■□□□□ 0.24
ATG3-204ENST00000467275 PROM2Q8N271 834 aa16.46■□□□□ 0.23
ATG3-204ENST00000467275 FKBP8Q14318 412 aa16.45■□□□□ 0.22
ATG3-204ENST00000467275 SP7Q8TDD2 431 aaPredicted RBP16.34■□□□□ 0.21
ATG3-204ENST00000467275 FARP1Q9Y4F1 1045 aaPredicted RBP16.34■□□□□ 0.21
ATG3-204ENST00000467275 CREBZFQ9NS37 354 aa16.33■□□□□ 0.2
ATG3-204ENST00000467275 C19orf67A6NJJ6 358 aa16.28■□□□□ 0.2
ATG3-204ENST00000467275 EVX2Q03828 476 aa16.28■□□□□ 0.2
ATG3-204ENST00000467275 CD44P16070 742 aaKnown RBP16.16■□□□□ 0.18
ATG3-204ENST00000467275 NPM1P06748 294 aaKnown RBP eCLIP16.11■□□□□ 0.17
ATG3-204ENST00000467275 MIER1Q8N108 512 aa16.1■□□□□ 0.17
ATG3-204ENST00000467275 PLEKHG5O94827 1062 aa16.09■□□□□ 0.17
ATG3-204ENST00000467275 MNX1P50219 401 aaPredicted RBP16.07■□□□□ 0.16
ATG3-204ENST00000467275 PLCD3Q8N3E9 789 aa16.03■□□□□ 0.16
ATG3-204ENST00000467275 FBXO3Q9UK99 471 aa16.01■□□□□ 0.15
ATG3-204ENST00000467275 ZRANB1Q9UGI0 708 aa16■□□□□ 0.15
ATG3-204ENST00000467275 PAK3O75914 559 aaPredicted RBP15.99■□□□□ 0.15
ATG3-204ENST00000467275 GABBR2O75899 941 aa15.97■□□□□ 0.15
ATG3-204ENST00000467275 ZNF579Q8NAF0 562 aaKnown RBP15.89■□□□□ 0.13
ATG3-204ENST00000467275 ZBTB47Q9UFB7 747 aaPredicted RBP15.88■□□□□ 0.13
ATG3-204ENST00000467275 CLCN6P51797 869 aa15.86■□□□□ 0.13
ATG3-204ENST00000467275 TSPYL2Q9H2G4 693 aaPredicted RBP15.82■□□□□ 0.12
ATG3-204ENST00000467275 VASPP50552 380 aaPredicted RBP15.78■□□□□ 0.12
ATG3-204ENST00000467275 PHF12Q96QT6 1004 aa15.78■□□□□ 0.12
ATG3-204ENST00000467275 RASEFQ8IZ41 740 aa15.74■□□□□ 0.11
ATG3-204ENST00000467275 KLHL34Q8N239 644 aa15.69■□□□□ 0.1
ATG3-204ENST00000467275 GALR2O43603 387 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms